Wall clock time and date at job start Mon Mar 30 2020 00:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 109.47545 * 2 1 4 4 O 1.42901 * 109.47107 * 239.99835 * 2 1 3 5 5 C 1.42901 * 114.00214 * 150.78652 * 4 2 1 6 6 C 1.52997 * 109.47090 * 271.01888 * 5 4 2 7 7 C 1.52995 * 109.47313 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.47166 * 59.99866 * 7 6 5 9 9 C 1.53003 * 109.46847 * 300.00101 * 8 7 6 10 10 C 1.52994 * 109.47592 * 151.01473 * 5 4 2 11 11 C 1.50707 * 109.47091 * 120.00102 * 2 1 3 12 12 O 1.21276 * 120.00173 * 114.99773 * 11 2 1 13 13 N 1.34779 * 119.99583 * 294.72565 * 11 2 1 14 14 C 1.46501 * 119.99804 * 180.27514 * 13 11 2 15 15 C 1.52995 * 109.47201 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47253 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00259 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00316 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00363 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47361 * 59.99549 * 20 18 16 22 22 H 1.48500 * 109.47308 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47124 * 299.99565 * 20 18 16 24 24 H 1.09002 * 109.47117 * 58.06526 * 1 2 3 25 25 H 1.09002 * 109.47514 * 178.06401 * 1 2 3 26 26 H 1.08998 * 109.47533 * 298.06664 * 1 2 3 27 27 H 1.09004 * 109.46520 * 31.01305 * 5 4 2 28 28 H 1.09010 * 109.47027 * 299.99859 * 6 5 4 29 29 H 1.08999 * 109.47436 * 59.99495 * 6 5 4 30 30 H 1.09001 * 109.47546 * 300.00056 * 7 6 5 31 31 H 1.08999 * 109.47735 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.47630 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.47235 * 59.99530 * 8 7 6 34 34 H 1.08996 * 109.47056 * 300.00067 * 9 8 7 35 35 H 1.08999 * 109.47169 * 179.97438 * 9 8 7 36 36 H 1.09006 * 109.46997 * 300.00366 * 10 5 4 37 37 H 1.09001 * 109.47103 * 59.99594 * 10 5 4 38 38 H 0.96996 * 120.00002 * 0.27267 * 13 11 2 39 39 H 1.09001 * 109.46946 * 300.00086 * 14 13 11 40 40 H 1.09005 * 109.46887 * 59.99880 * 14 13 11 41 41 H 1.09010 * 109.47151 * 299.99721 * 15 14 13 42 42 H 1.08997 * 109.47351 * 59.99859 * 15 14 13 43 43 H 0.96997 * 120.00115 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 3.2743 -0.2060 -1.6310 6 6 3.0639 0.9507 -2.6102 7 6 4.4215 1.4518 -3.1068 8 6 5.1581 0.3124 -3.8141 9 6 5.3685 -0.8443 -2.8349 10 6 4.0104 -1.3455 -2.3384 11 6 2.0323 -0.7105 1.2305 12 8 2.6529 -1.7467 1.1216 13 7 1.7966 -0.1913 2.4517 14 6 2.2901 -0.8787 3.6476 15 6 1.8906 -0.0854 4.8933 16 6 2.3988 -0.7922 6.1234 17 1 2.9511 -1.7152 6.0265 18 6 2.1578 -0.2611 7.3727 19 7 1.4848 0.8627 7.4909 20 14 2.7871 -1.1376 8.8975 21 1 4.2669 -1.2438 8.8322 22 1 2.3995 -0.3675 10.1066 23 1 2.1957 -2.4981 8.9660 24 1 -0.3633 0.5436 -0.8721 25 1 -0.3634 -1.0271 -0.0347 26 1 -0.3634 0.4835 0.9068 27 1 3.8669 0.1386 -0.7835 28 1 2.4712 0.6061 -3.4576 29 1 2.5395 1.7625 -2.1062 30 1 5.0139 1.7965 -2.2592 31 1 4.2717 2.2756 -3.8047 32 1 6.1255 0.6692 -4.1675 33 1 4.5658 -0.0323 -4.6617 34 1 5.9607 -0.4996 -1.9873 35 1 5.8929 -1.6561 -3.3388 36 1 4.1602 -2.1696 -1.6408 37 1 3.4177 -1.6902 -3.1858 38 1 1.3002 0.6375 2.5388 39 1 1.8561 -1.8774 3.6977 40 1 3.3763 -0.9566 3.5997 41 1 2.3250 0.9131 4.8430 42 1 0.8045 -0.0071 4.9414 43 1 1.3156 1.2365 8.3698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320186765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:26 Heat of formation + Delta-G solvation = -124.018497 kcal Electronic energy + Delta-G solvation = -20868.075302 eV Core-core repulsion = 17718.682298 eV Total energy + Delta-G solvation = -3149.393004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95837 -38.63345 -36.45171 -34.79400 -32.97236 -31.89905 -30.94104 -29.67579 -28.99931 -25.24436 -23.69410 -22.78717 -22.41734 -20.98926 -20.06325 -19.89003 -17.15684 -17.08805 -16.36583 -15.82788 -15.03767 -14.82624 -14.57387 -14.51533 -14.35644 -13.74648 -13.66659 -13.40839 -13.00064 -12.76347 -12.41404 -12.37679 -12.29365 -12.17546 -11.56844 -11.30797 -11.22097 -11.12899 -11.01899 -10.93902 -10.69735 -10.66949 -10.47226 -10.32583 -9.96505 -9.68263 -9.37332 -8.89175 -8.54556 -8.35797 -6.10490 -4.13437 2.96838 3.30501 3.33527 3.34631 3.39299 3.80137 4.40885 4.52543 4.55007 4.73944 4.87377 4.95518 5.03209 5.05290 5.15796 5.18159 5.26460 5.30641 5.32592 5.43106 5.49097 5.65582 5.68810 5.80619 5.82529 5.92505 5.96036 6.00790 6.06661 6.21997 6.22749 6.32930 6.33964 6.72767 6.90884 7.13483 7.50419 7.60167 7.87677 8.00958 8.26940 8.65488 8.92352 9.51431 11.01066 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.003255 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.218653 B = 8599.772904 C = 8930.623566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 H 0.082 0.918 4 O -0.352 6.352 5 C 0.091 3.909 6 C -0.142 4.142 7 C -0.118 4.118 8 C -0.121 4.121 9 C -0.118 4.118 10 C -0.114 4.114 11 C 0.480 3.520 12 O -0.535 6.535 13 N -0.721 5.721 14 C 0.122 3.878 15 C 0.013 3.987 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.396 0.604 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 2.939 -21.540 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 H 0.100 0.900 4 O -0.269 6.269 5 C 0.033 3.967 6 C -0.179 4.179 7 C -0.155 4.155 8 C -0.159 4.159 9 C -0.155 4.155 10 C -0.152 4.152 11 C 0.264 3.736 12 O -0.412 6.412 13 N -0.373 5.373 14 C -0.001 4.001 15 C -0.024 4.024 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.230 0.770 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.426 2.150 -21.575 21.817 hybrid contribution 0.180 0.246 1.186 1.224 sum 2.606 2.396 -20.389 20.694 Atomic orbital electron populations 1.21801 0.91355 1.03901 1.03106 1.22055 0.96455 0.95576 0.84990 0.90049 1.87995 1.35778 1.61614 1.41521 1.22137 0.84696 0.94123 0.95697 1.22082 0.97719 0.98130 1.00010 1.21498 0.95903 0.97864 1.00266 1.21576 1.00217 0.95748 0.98342 1.21525 0.96779 0.98063 0.99149 1.21545 0.95302 0.97789 1.00516 1.21303 0.80664 0.86255 0.85338 1.90671 1.40411 1.23435 1.86700 1.46380 1.56922 1.27576 1.06454 1.21716 0.98287 0.96467 0.83593 1.19314 0.97334 0.95559 0.90199 1.21020 1.35670 1.08783 0.90668 0.92317 1.24994 0.95036 0.94981 0.99241 1.69944 1.40075 1.19305 1.24020 0.86568 0.79382 0.79664 0.81903 1.20106 1.21224 1.20089 0.91047 0.91128 0.90402 0.92240 0.91096 0.91910 0.91870 0.91747 0.91976 0.91879 0.91795 0.91481 0.90658 0.91359 0.77017 0.92585 0.92690 0.95985 0.95919 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.52 37.15 0.35 -1.22 16 2 C 0.07 0.94 2.92 -27.88 -0.08 0.86 16 3 H 0.08 0.90 7.52 -51.93 -0.39 0.51 16 4 O -0.35 -5.04 9.18 -55.09 -0.51 -5.55 16 5 C 0.09 1.12 2.39 -26.74 -0.06 1.05 16 6 C -0.14 -1.35 5.50 -26.74 -0.15 -1.50 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 8 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 9 C -0.12 -1.09 5.92 -26.71 -0.16 -1.25 16 10 C -0.11 -1.31 5.58 -26.71 -0.15 -1.46 16 11 C 0.48 8.40 7.08 -10.98 -0.08 8.33 16 12 O -0.54 -11.57 16.51 -14.30 -0.24 -11.80 16 13 N -0.72 -12.64 5.50 -60.29 -0.33 -12.97 16 14 C 0.12 2.62 5.61 -4.04 -0.02 2.59 16 15 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 16 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 20 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.76 7.88 -51.93 -0.41 0.35 16 27 H 0.06 0.79 7.79 -51.93 -0.40 0.39 16 28 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.06 0.57 7.86 -51.93 -0.41 0.16 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.40 5.89 8.23 -40.82 -0.34 5.55 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -31.97 348.82 -9.15 -41.11 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.83 Total: 0.85 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.22 Total: -7.94 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.40 Total: -38.31 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.74 Total: -17.35 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.97 -9.15 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320186765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.904 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds