Wall clock time and date at job start Mon Mar 30 2020 00:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 109.47545 * 2 1 4 4 O 1.42901 * 109.47107 * 239.99835 * 2 1 3 5 5 C 1.42901 * 114.00214 * 150.78652 * 4 2 1 6 6 C 1.52997 * 109.47090 * 271.01888 * 5 4 2 7 7 C 1.52995 * 109.47313 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.47166 * 59.99866 * 7 6 5 9 9 C 1.53003 * 109.46847 * 300.00101 * 8 7 6 10 10 C 1.52994 * 109.47592 * 151.01473 * 5 4 2 11 11 C 1.50707 * 109.47091 * 120.00102 * 2 1 3 12 12 O 1.21276 * 120.00173 * 114.99773 * 11 2 1 13 13 N 1.34779 * 119.99583 * 294.72565 * 11 2 1 14 14 C 1.46501 * 119.99804 * 180.27514 * 13 11 2 15 15 C 1.52995 * 109.47201 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47253 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00259 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00316 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00363 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47361 * 59.99549 * 20 18 16 22 22 H 1.48500 * 109.47308 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47124 * 299.99565 * 20 18 16 24 24 H 1.09002 * 109.47117 * 58.06526 * 1 2 3 25 25 H 1.09002 * 109.47514 * 178.06401 * 1 2 3 26 26 H 1.08998 * 109.47533 * 298.06664 * 1 2 3 27 27 H 1.09004 * 109.46520 * 31.01305 * 5 4 2 28 28 H 1.09010 * 109.47027 * 299.99859 * 6 5 4 29 29 H 1.08999 * 109.47436 * 59.99495 * 6 5 4 30 30 H 1.09001 * 109.47546 * 300.00056 * 7 6 5 31 31 H 1.08999 * 109.47735 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.47630 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.47235 * 59.99530 * 8 7 6 34 34 H 1.08996 * 109.47056 * 300.00067 * 9 8 7 35 35 H 1.08999 * 109.47169 * 179.97438 * 9 8 7 36 36 H 1.09006 * 109.46997 * 300.00366 * 10 5 4 37 37 H 1.09001 * 109.47103 * 59.99594 * 10 5 4 38 38 H 0.96996 * 120.00002 * 0.27267 * 13 11 2 39 39 H 1.09001 * 109.46946 * 300.00086 * 14 13 11 40 40 H 1.09005 * 109.46887 * 59.99880 * 14 13 11 41 41 H 1.09010 * 109.47151 * 299.99721 * 15 14 13 42 42 H 1.08997 * 109.47351 * 59.99859 * 15 14 13 43 43 H 0.96997 * 120.00115 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 3.2743 -0.2060 -1.6310 6 6 3.0639 0.9507 -2.6102 7 6 4.4215 1.4518 -3.1068 8 6 5.1581 0.3124 -3.8141 9 6 5.3685 -0.8443 -2.8349 10 6 4.0104 -1.3455 -2.3384 11 6 2.0323 -0.7105 1.2305 12 8 2.6529 -1.7467 1.1216 13 7 1.7966 -0.1913 2.4517 14 6 2.2901 -0.8787 3.6476 15 6 1.8906 -0.0854 4.8933 16 6 2.3988 -0.7922 6.1234 17 1 2.9511 -1.7152 6.0265 18 6 2.1578 -0.2611 7.3727 19 7 1.4848 0.8627 7.4909 20 14 2.7871 -1.1376 8.8975 21 1 4.2669 -1.2438 8.8322 22 1 2.3995 -0.3675 10.1066 23 1 2.1957 -2.4981 8.9660 24 1 -0.3633 0.5436 -0.8721 25 1 -0.3634 -1.0271 -0.0347 26 1 -0.3634 0.4835 0.9068 27 1 3.8669 0.1386 -0.7835 28 1 2.4712 0.6061 -3.4576 29 1 2.5395 1.7625 -2.1062 30 1 5.0139 1.7965 -2.2592 31 1 4.2717 2.2756 -3.8047 32 1 6.1255 0.6692 -4.1675 33 1 4.5658 -0.0323 -4.6617 34 1 5.9607 -0.4996 -1.9873 35 1 5.8929 -1.6561 -3.3388 36 1 4.1602 -2.1696 -1.6408 37 1 3.4177 -1.6902 -3.1858 38 1 1.3002 0.6375 2.5388 39 1 1.8561 -1.8774 3.6977 40 1 3.3763 -0.9566 3.5997 41 1 2.3250 0.9131 4.8430 42 1 0.8045 -0.0071 4.9414 43 1 1.3156 1.2365 8.3698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320186765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:26 Heat of formation + Delta-G solvation = -143.251990 kcal Electronic energy + Delta-G solvation = -20868.909329 eV Core-core repulsion = 17718.682298 eV Total energy + Delta-G solvation = -3150.227031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20309 -39.73515 -37.47008 -36.53311 -34.89271 -33.09244 -31.71141 -31.27546 -30.03357 -27.02289 -25.05756 -23.59145 -23.30128 -22.80904 -21.39217 -20.73967 -18.67843 -18.30350 -18.10193 -16.98815 -16.51331 -16.35423 -16.20087 -15.45692 -15.37086 -15.03788 -14.80334 -14.40009 -14.30418 -14.20602 -13.74748 -13.30411 -13.22408 -13.19396 -13.13969 -12.94219 -12.56391 -12.45591 -12.24810 -12.11430 -12.02401 -11.81105 -11.67528 -11.47756 -11.45953 -11.28341 -10.91111 -10.61350 -10.20581 -10.05814 -8.25454 -6.36073 1.40826 1.42892 1.50976 1.56713 2.10357 2.41044 2.65361 3.09125 3.68626 3.73219 3.81646 3.95023 4.00892 4.06357 4.24508 4.28418 4.33570 4.45644 4.47285 4.54684 4.55479 4.67128 4.71882 4.81549 4.84285 4.93546 5.03232 5.11720 5.18697 5.19634 5.23321 5.26172 5.30685 5.38114 5.46523 5.49401 5.56232 5.76613 6.11189 6.14699 6.61241 6.76611 7.23978 7.33203 8.86067 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.003255 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.218653 B = 8599.772904 C = 8930.623566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.111 0.889 4 O -0.369 6.369 5 C 0.084 3.916 6 C -0.134 4.134 7 C -0.117 4.117 8 C -0.118 4.118 9 C -0.115 4.115 10 C -0.114 4.114 11 C 0.477 3.523 12 O -0.582 6.582 13 N -0.713 5.713 14 C 0.140 3.860 15 C 0.025 3.975 16 C -0.550 4.550 17 H 0.056 0.944 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.269 1.269 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.412 0.588 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.010 0.990 42 H 0.011 0.989 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 3.948 -22.594 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.129 0.871 4 O -0.287 6.287 5 C 0.027 3.973 6 C -0.172 4.172 7 C -0.155 4.155 8 C -0.156 4.156 9 C -0.153 4.153 10 C -0.152 4.152 11 C 0.264 3.736 12 O -0.461 6.461 13 N -0.366 5.366 14 C 0.016 3.984 15 C -0.013 4.013 16 C -0.589 4.589 17 H 0.075 0.925 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.194 1.194 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.248 0.752 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.371 3.184 -22.649 22.994 hybrid contribution 0.196 -0.083 1.491 1.506 sum 2.567 3.101 -21.158 21.538 Atomic orbital electron populations 1.21850 0.89207 1.03592 1.05109 1.22182 0.97883 0.95935 0.82373 0.87122 1.87988 1.36563 1.62657 1.41466 1.22317 0.83814 0.95306 0.95851 1.22026 0.98785 0.97028 0.99337 1.21525 0.94979 0.98431 1.00542 1.21573 1.01153 0.94909 0.97932 1.21523 0.95227 0.99135 0.99381 1.21557 0.96813 0.96912 0.99906 1.22243 0.79411 0.85710 0.86242 1.90650 1.42461 1.25675 1.87350 1.46181 1.56926 1.27939 1.05546 1.21213 0.97418 0.95639 0.84089 1.19116 0.96212 0.95039 0.90901 1.21440 1.36088 1.09149 0.92210 0.92533 1.25848 0.95077 0.95681 1.02389 1.70041 1.40886 1.20514 1.24987 0.85519 0.79006 0.78639 0.78019 1.19393 1.20414 1.19425 0.88326 0.92658 0.89059 0.93949 0.90635 0.90988 0.92304 0.89885 0.90534 0.91163 0.92622 0.90520 0.93745 0.90843 0.75205 0.93878 0.93899 0.97141 0.97077 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.52 71.98 0.69 -2.08 16 2 C 0.08 1.96 2.92 29.85 0.09 2.05 16 3 H 0.11 2.17 7.52 -2.39 -0.02 2.15 16 4 O -0.37 -10.35 9.18 -129.99 -1.19 -11.54 16 5 C 0.08 2.03 2.39 30.59 0.07 2.10 16 6 C -0.13 -2.27 5.50 30.59 0.17 -2.10 16 7 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 8 C -0.12 -1.61 5.92 30.60 0.18 -1.43 16 9 C -0.12 -2.05 5.92 30.61 0.18 -1.87 16 10 C -0.11 -2.66 5.58 30.61 0.17 -2.49 16 11 C 0.48 16.75 7.08 87.66 0.62 17.37 16 12 O -0.58 -25.89 16.51 15.97 0.26 -25.63 16 13 N -0.71 -24.95 5.50 -463.05 -2.55 -27.49 16 14 C 0.14 6.16 5.61 86.38 0.48 6.65 16 15 C 0.02 1.25 5.09 29.84 0.15 1.40 16 16 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 18 C 0.01 0.51 5.46 84.65 0.46 0.97 16 19 N -0.92 -53.99 13.29 21.45 0.28 -53.71 16 20 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.55 7.88 -2.39 -0.02 1.53 16 27 H 0.04 1.14 7.79 -2.38 -0.02 1.12 16 28 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 1.09 7.86 -2.39 -0.02 1.07 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.41 11.87 8.23 -92.71 -0.76 11.10 16 39 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -69.48 348.82 2.71 -66.77 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.20 Total: 17.54 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 3.68 Total: -11.64 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.26 Total: -81.20 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.93 Total: -37.17 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -69.48 2.71 -66.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320186765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.482 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds