Wall clock time and date at job start Mon Mar 30 2020 00:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99970 * 2 1 4 4 C 1.53007 * 109.46832 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46656 * 185.15865 * 4 3 2 6 6 C 1.50693 * 112.85006 * 303.49618 * 5 4 3 7 7 O 1.21280 * 120.00567 * 106.37020 * 6 5 4 8 8 N 1.34780 * 119.99870 * 286.36963 * 6 5 4 9 9 C 1.46511 * 119.99883 * 355.75342 * 8 6 5 10 10 C 1.46498 * 120.00256 * 175.75698 * 8 6 5 11 11 H 1.08997 * 109.47059 * 359.97438 * 10 8 6 12 12 C 1.52996 * 109.47249 * 119.99885 * 10 8 6 13 13 C 1.50702 * 109.46905 * 239.99809 * 10 8 6 14 14 H 1.07996 * 120.00412 * 359.97438 * 13 10 8 15 15 C 1.37877 * 119.99744 * 179.97438 * 13 10 8 16 16 N 1.31510 * 120.00030 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99866 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.46900 * 90.00052 * 17 15 13 19 19 H 1.48500 * 109.46989 * 210.00074 * 17 15 13 20 20 H 1.48497 * 109.47336 * 330.00016 * 17 15 13 21 21 C 1.53784 * 113.69097 * 74.76320 * 5 4 3 22 22 C 1.53782 * 87.08190 * 89.12315 * 21 5 4 23 23 C 1.53782 * 113.61129 * 172.29628 * 5 4 3 24 24 H 1.09000 * 109.46909 * 59.99557 * 1 2 3 25 25 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46893 * 299.99830 * 1 2 3 27 27 H 1.09000 * 109.47068 * 60.00560 * 3 2 1 28 28 H 1.08994 * 109.47228 * 300.00163 * 3 2 1 29 29 H 1.08988 * 109.47138 * 65.15900 * 4 3 2 30 30 H 1.09002 * 109.47067 * 305.15638 * 4 3 2 31 31 H 1.09004 * 109.47005 * 275.35660 * 9 8 6 32 32 H 1.08998 * 109.47104 * 35.35340 * 9 8 6 33 33 H 1.08996 * 109.47055 * 155.35490 * 9 8 6 34 34 H 1.09003 * 109.47450 * 299.99680 * 12 10 8 35 35 H 1.08997 * 109.47164 * 59.99974 * 12 10 8 36 36 H 1.09003 * 109.46814 * 179.97438 * 12 10 8 37 37 H 0.97003 * 119.99839 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.61364 * 203.67398 * 21 5 4 39 39 H 1.08998 * 113.61131 * 334.57742 * 21 5 4 40 40 H 1.09004 * 113.61768 * 270.88483 * 22 21 5 41 41 H 1.08996 * 113.61270 * 139.97890 * 22 21 5 42 42 H 1.09000 * 113.61178 * 25.34982 * 23 5 4 43 43 H 1.08995 * 113.61331 * 156.25126 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1574 2.5765 0.1291 6 6 3.7028 3.5235 -0.9514 7 8 2.9165 4.4092 -0.6901 8 7 4.1700 3.3863 -2.2081 9 6 5.1894 2.3767 -2.5045 10 6 3.6586 4.2468 -3.2778 11 1 2.9129 4.9292 -2.8700 12 6 4.8118 5.0517 -3.8803 13 6 3.0270 3.3952 -4.3488 14 1 3.0088 2.3205 -4.2435 15 6 2.4725 3.9881 -5.4632 16 7 2.4951 5.2967 -5.5918 17 14 1.6890 2.9325 -6.7905 18 1 0.2491 2.7389 -6.4831 19 1 1.8280 3.6074 -8.1059 20 1 2.3671 1.6122 -6.8374 21 6 4.0613 3.1666 1.5459 22 6 5.4061 2.4804 1.8380 23 6 5.6823 2.5539 0.3269 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8632 0.7257 -0.9333 30 1 3.8513 0.5658 0.8393 31 1 6.1773 2.7831 -2.2873 32 1 5.0164 1.4940 -1.8888 33 1 5.1331 2.1018 -3.5577 34 1 5.2687 5.6677 -3.1057 35 1 5.5572 4.3690 -4.2882 36 1 4.4313 5.6915 -4.6765 37 1 2.1052 5.7138 -6.3760 38 1 4.1123 4.2552 1.5699 39 1 3.2317 2.7677 2.1296 40 1 5.3043 1.4624 2.2142 41 1 6.0854 3.0878 2.4360 42 1 6.1612 1.6603 -0.0734 43 1 6.1764 3.4749 0.0177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337807403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:27 Heat of formation + Delta-G solvation = -85.607407 kcal Electronic energy + Delta-G solvation = -22338.051256 eV Core-core repulsion = 19190.323882 eV Total energy + Delta-G solvation = -3147.727374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.84394 -39.10492 -38.49642 -37.08230 -34.77748 -32.60500 -31.34541 -27.93462 -27.70248 -27.33228 -26.67033 -26.10850 -23.91536 -22.88057 -20.72724 -19.28542 -18.40253 -17.73032 -17.47481 -17.42149 -16.99922 -16.33746 -16.09771 -15.87464 -15.63024 -15.06677 -14.47031 -14.40725 -13.99781 -13.63713 -13.44482 -13.33624 -13.25357 -12.97517 -12.84405 -12.80225 -12.70970 -12.50707 -12.28161 -12.22501 -12.16655 -12.06020 -11.97426 -11.36303 -11.22331 -11.09657 -10.69477 -10.59168 -10.26040 -9.29378 -8.16986 -6.33653 1.38345 1.39248 1.49647 1.81848 2.31651 2.49401 2.67914 3.10662 3.42564 3.62963 3.82181 3.90869 3.94346 4.10589 4.24362 4.39503 4.43102 4.46325 4.53053 4.65725 4.72637 4.74221 4.77188 4.81646 4.84776 4.87783 4.92340 4.99090 5.03558 5.05271 5.15105 5.20795 5.30323 5.45265 5.53346 5.61787 5.66404 6.03748 6.09534 6.15063 6.74774 6.87495 7.31109 7.50381 8.87421 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.006939 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.712867 B = 4034.449404 C = 5112.596443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.065 3.935 4 C -0.080 4.080 5 C -0.105 4.105 6 C 0.508 3.492 7 O -0.608 6.608 8 N -0.596 5.596 9 C 0.077 3.923 10 C 0.262 3.738 11 H 0.004 0.996 12 C -0.130 4.130 13 C -0.537 4.537 14 H 0.060 0.940 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.962 3.038 18 H -0.283 1.283 19 H -0.278 1.278 20 H -0.261 1.261 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.117 4.117 24 H 0.029 0.971 25 H 0.110 0.890 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.013 0.987 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.017 0.983 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.264 0.736 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -11.349 12.572 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.011 4.011 4 C -0.117 4.117 5 C -0.108 4.108 6 C 0.298 3.702 7 O -0.491 6.491 8 N -0.326 5.326 9 C -0.065 4.065 10 C 0.159 3.841 11 H 0.022 0.978 12 C -0.189 4.189 13 C -0.575 4.575 14 H 0.078 0.922 15 C -0.184 4.184 16 N -0.557 5.557 17 Si 0.787 3.213 18 H -0.209 1.209 19 H -0.204 1.204 20 H -0.185 1.185 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.155 4.155 24 H 0.048 0.952 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.624 -10.920 12.537 17.551 hybrid contribution -1.218 0.647 -1.251 1.862 sum 4.406 -10.273 11.286 15.885 Atomic orbital electron populations 1.22931 0.79861 1.04120 1.00210 1.87761 1.21183 1.27751 1.95489 1.22425 0.95271 0.84234 0.99214 1.21256 0.91728 0.93620 1.05091 1.22168 0.99987 0.94578 0.94057 1.21203 0.80108 0.85038 0.83899 1.90591 1.38122 1.37815 1.82587 1.48186 1.40227 1.36207 1.07933 1.22025 0.90488 0.91279 1.02710 1.18499 0.92069 0.89197 0.84298 0.97806 1.21850 0.97627 0.99504 0.99890 1.21569 1.38038 0.93497 1.04413 0.92225 1.25733 0.96218 0.96167 1.00322 1.70027 1.45579 1.10264 1.29816 0.85494 0.78454 0.79144 0.78197 1.20879 1.20373 1.18490 1.22859 1.00012 0.99980 0.92937 1.22823 0.95243 1.02186 0.95311 1.23046 0.90969 1.03595 0.97842 0.95218 0.87123 0.93002 0.92822 0.96906 0.90122 0.86722 0.91383 0.89415 0.91554 0.96382 0.93429 0.91515 0.92633 0.91702 0.90596 0.87386 0.89757 0.87871 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -11.98 10.70 -148.98 -1.59 -13.57 16 3 C 0.07 2.08 5.54 71.98 0.40 2.48 16 4 C -0.08 -2.08 4.73 30.60 0.14 -1.94 16 5 C -0.10 -3.02 0.29 -52.40 -0.02 -3.04 16 6 C 0.51 21.54 5.55 87.65 0.49 22.03 16 7 O -0.61 -31.96 15.70 -3.03 -0.05 -32.01 16 8 N -0.60 -25.89 2.75 -826.79 -2.28 -28.17 16 9 C 0.08 2.51 8.01 127.77 1.02 3.53 16 10 C 0.26 14.04 2.63 44.24 0.12 14.15 16 11 H 0.00 0.26 6.91 -2.39 -0.02 0.24 16 12 C -0.13 -6.47 8.97 71.98 0.65 -5.83 16 13 C -0.54 -29.82 7.95 25.60 0.20 -29.62 16 14 H 0.06 3.23 7.42 -2.91 -0.02 3.21 16 15 C 0.02 0.84 5.30 84.66 0.45 1.29 16 16 N -0.92 -53.94 11.32 21.45 0.24 -53.70 16 17 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 C -0.12 -3.09 6.72 31.12 0.21 -2.88 16 22 C -0.12 -2.03 7.73 31.12 0.24 -1.79 16 23 C -0.12 -2.47 5.15 31.12 0.16 -2.31 16 24 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.05 1.65 7.28 -2.39 -0.02 1.63 16 28 H 0.01 0.51 7.51 -2.39 -0.02 0.49 16 29 H 0.08 2.13 5.97 -2.39 -0.01 2.12 16 30 H 0.11 2.24 7.31 -2.39 -0.02 2.22 16 31 H 0.07 1.86 7.77 -2.39 -0.02 1.84 16 32 H 0.09 2.31 4.06 -2.39 -0.01 2.30 16 33 H 0.07 2.34 7.10 -2.39 -0.02 2.32 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 36 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.06 1.98 7.88 -2.39 -0.02 1.96 16 39 H 0.08 1.82 7.36 -2.39 -0.02 1.80 16 40 H 0.11 1.36 7.60 -2.39 -0.02 1.35 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 1.65 7.51 -2.39 -0.02 1.63 16 43 H 0.07 1.79 8.09 -2.39 -0.02 1.77 16 Total: -1.00 -72.17 333.45 4.64 -67.54 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.98 Total: 16.21 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.31 Total: -2.08 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -2.03 Total: -81.86 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -1.64 Total: -45.58 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -72.17 4.64 -67.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337807403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.072 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds