Wall clock time and date at job start Mon Mar 30 2020 01:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42906 * 109.47436 * 2 1 4 4 C 1.42900 * 113.99915 * 185.00224 * 3 2 1 5 5 C 1.50697 * 110.01908 * 305.22832 * 4 3 2 6 6 O 1.21278 * 120.00095 * 124.96942 * 5 4 3 7 7 N 1.34777 * 119.99721 * 304.96763 * 5 4 3 8 8 C 1.46503 * 120.00266 * 4.62940 * 7 5 4 9 9 C 1.46501 * 119.99886 * 184.63136 * 7 5 4 10 10 H 1.09008 * 109.47083 * 359.97438 * 9 7 5 11 11 C 1.52998 * 109.47298 * 239.99962 * 9 7 5 12 12 C 1.50701 * 109.47623 * 119.99809 * 9 7 5 13 13 H 1.08004 * 119.99351 * 35.00108 * 12 9 7 14 14 C 1.37872 * 120.00165 * 215.00812 * 12 9 7 15 15 N 1.31517 * 119.99522 * 184.97695 * 14 12 9 16 16 Si 1.86796 * 120.00278 * 4.97097 * 14 12 9 17 17 H 1.48502 * 109.47127 * 84.95420 * 16 14 12 18 18 H 1.48500 * 109.47237 * 204.95612 * 16 14 12 19 19 H 1.48498 * 109.46948 * 324.95498 * 16 14 12 20 20 C 1.54266 * 110.02977 * 66.62152 * 4 3 2 21 21 C 1.54968 * 104.16065 * 95.75371 * 20 4 3 22 22 C 1.54890 * 102.77775 * 37.88241 * 21 20 4 23 23 C 1.53878 * 110.02916 * 183.83622 * 4 3 2 24 24 H 1.09004 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47452 * 299.99931 * 1 2 3 26 26 H 1.09003 * 109.47564 * 60.00001 * 1 2 3 27 27 H 1.09004 * 109.47534 * 239.99615 * 2 1 3 28 28 H 1.09007 * 109.47107 * 119.99915 * 2 1 3 29 29 H 1.09002 * 109.46813 * 275.49358 * 8 7 5 30 30 H 1.08998 * 109.46659 * 35.49077 * 8 7 5 31 31 H 1.09000 * 109.47242 * 155.49246 * 8 7 5 32 32 H 1.09002 * 109.47166 * 294.96817 * 11 9 7 33 33 H 1.08998 * 109.47201 * 54.95838 * 11 9 7 34 34 H 1.08989 * 109.47411 * 174.96179 * 11 9 7 35 35 H 0.97005 * 119.99711 * 180.02562 * 15 14 12 36 36 H 1.09011 * 110.48192 * 214.39482 * 20 4 3 37 37 H 1.08999 * 110.49078 * 337.03925 * 20 4 3 38 38 H 1.09000 * 110.71692 * 279.56905 * 21 20 4 39 39 H 1.08997 * 110.92054 * 156.29476 * 21 20 4 40 40 H 1.08993 * 110.48626 * 203.40283 * 22 21 20 41 41 H 1.09003 * 110.48120 * 80.76270 * 22 21 20 42 42 H 1.09001 * 110.03013 * 359.94857 * 23 4 3 43 43 H 1.08994 * 110.03038 * 121.38093 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4617 -0.1138 5 6 4.0971 0.6556 0.9683 6 8 4.9196 -0.1862 0.6757 7 7 3.7830 0.8702 2.2613 8 6 2.7179 1.8140 2.6095 9 6 4.5068 0.1598 3.3185 10 1 5.2556 -0.4934 2.8705 11 6 3.5222 -0.6791 4.1356 12 6 5.1855 1.1580 4.2208 13 1 4.7119 2.1058 4.4303 14 6 6.4109 0.8613 4.7787 15 7 6.9578 1.6887 5.6424 16 14 7.2942 -0.7159 4.3080 17 1 8.0731 -0.4944 3.0632 18 1 8.2144 -1.1137 5.4035 19 1 6.2973 -1.7933 4.0831 20 6 3.8863 0.9696 -1.5016 21 6 3.9873 2.2636 -2.3483 22 6 4.5478 3.2929 -1.3356 23 6 3.8461 2.9383 -0.0083 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.1243 2.8249 2.6409 30 1 1.9281 1.7629 1.8601 31 1 2.3091 1.5561 3.5865 32 1 2.8272 -0.0198 4.6555 33 1 2.9670 -1.3392 3.4691 34 1 4.0707 -1.2761 4.8640 35 1 7.8201 1.4802 6.0346 36 1 4.8595 0.4835 -1.4306 37 1 3.1494 0.2897 -1.9290 38 1 3.0036 2.5688 -2.7049 39 1 4.6748 2.1296 -3.1835 40 1 4.2935 4.3073 -1.6424 41 1 5.6277 3.1823 -1.2375 42 1 2.9667 3.5676 0.1288 43 1 4.5351 3.0718 0.8256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338416075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:15 Heat of formation + Delta-G solvation = -107.328859 kcal Electronic energy + Delta-G solvation = -22843.001403 eV Core-core repulsion = 19694.332116 eV Total energy + Delta-G solvation = -3148.669287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90999 -39.11084 -37.45613 -36.81289 -34.72675 -32.57274 -31.88219 -29.72590 -28.93208 -27.70988 -27.27753 -24.14726 -23.77106 -21.66738 -21.32764 -20.10438 -19.29946 -18.30182 -17.68129 -17.15080 -16.83867 -16.29165 -16.16120 -15.43319 -15.36159 -14.79538 -14.56945 -14.34978 -14.14425 -13.83407 -13.76088 -13.50522 -13.28890 -13.10454 -12.91877 -12.71974 -12.60363 -12.56013 -12.44114 -12.33922 -12.03849 -12.00022 -11.87523 -11.79925 -11.49010 -11.33662 -11.05060 -10.83816 -10.18286 -9.38590 -8.41255 -6.44929 1.22120 1.28120 1.36649 1.50962 2.18230 2.23337 2.57640 2.99138 3.36048 3.55458 3.71248 4.05387 4.14909 4.26432 4.34886 4.38840 4.41967 4.46614 4.51524 4.59170 4.64221 4.69230 4.71597 4.79346 4.81291 4.85781 4.99147 5.01707 5.04485 5.05139 5.11685 5.16649 5.21797 5.28049 5.31845 5.44108 5.48131 5.75813 6.00555 6.15451 6.59478 6.68926 7.16200 7.27361 8.74237 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.007059 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.997893 B = 3965.511269 C = 4466.212425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.040 3.960 3 O -0.355 6.355 4 C 0.110 3.890 5 C 0.479 3.521 6 O -0.595 6.595 7 N -0.584 5.584 8 C 0.072 3.928 9 C 0.219 3.781 10 H 0.038 0.962 11 C -0.138 4.138 12 C -0.519 4.519 13 H 0.052 0.948 14 C 0.031 3.969 15 N -0.931 5.931 16 Si 0.924 3.076 17 H -0.285 1.285 18 H -0.273 1.273 19 H -0.253 1.253 20 C -0.141 4.141 21 C -0.107 4.107 22 C -0.121 4.121 23 C -0.111 4.111 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.005 0.183 -14.690 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.037 4.037 3 O -0.274 6.274 4 C 0.067 3.933 5 C 0.267 3.733 6 O -0.478 6.478 7 N -0.313 5.313 8 C -0.070 4.070 9 C 0.116 3.884 10 H 0.056 0.944 11 C -0.197 4.197 12 C -0.558 4.558 13 H 0.070 0.930 14 C -0.169 4.169 15 N -0.570 5.570 16 Si 0.749 3.251 17 H -0.211 1.211 18 H -0.199 1.199 19 H -0.177 1.177 20 C -0.179 4.179 21 C -0.145 4.145 22 C -0.158 4.158 23 C -0.148 4.148 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.579 -0.056 -14.642 19.303 hybrid contribution 1.312 -0.874 0.624 1.695 sum -11.267 -0.930 -14.018 18.009 Atomic orbital electron populations 1.21708 0.90722 1.03494 1.03619 1.22738 0.97535 0.83388 0.99995 1.87921 1.18591 1.27388 1.93545 1.22367 0.81488 0.96796 0.92641 1.21858 0.82983 0.83495 0.85000 1.90580 1.37436 1.36765 1.82969 1.48273 1.35624 1.42130 1.05313 1.22129 0.90091 0.91860 1.02907 1.19170 0.91808 0.91838 0.85544 0.94419 1.22065 0.99243 0.98925 0.99422 1.21313 1.04057 1.03244 1.27146 0.92961 1.25595 0.97637 0.99208 0.94432 1.69986 1.18477 1.38651 1.29932 0.86105 0.79482 0.81753 0.77740 1.21092 1.19875 1.17717 1.22865 1.02256 0.99748 0.93006 1.22444 1.02433 0.92487 0.97090 1.22387 0.99375 1.00874 0.93205 1.22228 1.01591 0.91602 0.99412 0.89650 0.91645 0.90680 0.92544 0.95288 0.93702 0.87359 0.91227 0.91862 0.93614 0.93059 0.92174 0.91555 0.89774 0.89318 0.89818 0.88376 0.92543 0.87721 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.04 0.99 5.71 71.98 0.41 1.40 16 3 O -0.36 -9.61 7.28 -148.98 -1.09 -10.69 16 4 C 0.11 3.44 0.54 -10.82 -0.01 3.43 16 5 C 0.48 20.04 4.90 87.66 0.43 20.47 16 6 O -0.60 -29.44 14.73 -3.02 -0.04 -29.49 16 7 N -0.58 -24.95 2.73 -826.78 -2.26 -27.21 16 8 C 0.07 2.51 8.41 127.77 1.07 3.59 16 9 C 0.22 10.78 2.29 44.24 0.10 10.88 16 10 H 0.04 2.06 4.06 -2.38 -0.01 2.05 16 11 C -0.14 -5.80 9.06 71.98 0.65 -5.15 16 12 C -0.52 -29.41 8.82 25.60 0.23 -29.18 16 13 H 0.05 3.17 7.67 -2.91 -0.02 3.15 16 14 C 0.03 1.82 5.47 84.65 0.46 2.29 16 15 N -0.93 -57.41 13.96 21.45 0.30 -57.11 16 16 Si 0.92 46.95 27.00 68.60 1.85 48.80 16 17 H -0.28 -14.95 7.11 99.48 0.71 -14.25 16 18 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.25 -12.29 6.81 99.48 0.68 -11.61 16 20 C -0.14 -3.92 5.70 31.70 0.18 -3.74 16 21 C -0.11 -2.21 6.91 31.91 0.22 -1.99 16 22 C -0.12 -2.77 6.83 31.67 0.22 -2.55 16 23 C -0.11 -3.14 5.07 31.32 0.16 -2.98 16 24 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.36 6.28 -2.38 -0.01 1.34 16 28 H 0.03 0.87 7.23 -2.38 -0.02 0.85 16 29 H 0.04 1.58 7.61 -2.39 -0.02 1.57 16 30 H 0.11 3.19 4.81 -2.39 -0.01 3.18 16 31 H 0.07 2.38 6.54 -2.39 -0.02 2.36 16 32 H 0.06 2.47 6.87 -2.39 -0.02 2.45 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 36 H 0.07 2.23 6.83 -2.38 -0.02 2.22 16 37 H 0.08 2.09 6.21 -2.39 -0.01 2.08 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.10 2.53 7.95 -2.39 -0.02 2.51 16 43 H 0.05 1.83 7.37 -2.39 -0.02 1.81 16 Total: -1.00 -70.09 327.73 4.58 -65.51 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.95 Total: 15.42 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.87 Total: -5.22 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -1.96 Total: -84.32 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.13 Total: -40.18 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.85 Total: 48.80 kcal Total: -70.09 4.58 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338416075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.819 kcal (2) G-P(sol) polarization free energy of solvation -70.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds