Wall clock time and date at job start Mon Mar 30 2020 01:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.46956 * 2 1 4 4 C 1.42904 * 114.00240 * 178.68680 * 3 2 1 5 5 C 1.50698 * 110.43638 * 300.17712 * 4 3 2 6 6 O 1.21280 * 120.00109 * 140.15988 * 5 4 3 7 7 N 1.34774 * 119.99678 * 320.16226 * 5 4 3 8 8 C 1.46501 * 120.00311 * 355.26722 * 7 5 4 9 9 C 1.46504 * 119.99637 * 175.27478 * 7 5 4 10 10 H 1.08996 * 109.47034 * 359.97438 * 9 7 5 11 11 C 1.53001 * 109.47118 * 119.99778 * 9 7 5 12 12 C 1.50694 * 109.46880 * 239.99197 * 9 7 5 13 13 H 1.08005 * 120.00506 * 0.02562 * 12 9 7 14 14 C 1.37878 * 120.00172 * 180.02562 * 12 9 7 15 15 N 1.31516 * 120.00044 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 120.00089 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47184 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47187 * 120.00133 * 16 14 12 19 19 H 1.48504 * 109.46803 * 239.99825 * 16 14 12 20 20 C 1.54896 * 110.48206 * 62.85948 * 4 3 2 21 21 C 1.54889 * 102.74816 * 80.73701 * 20 4 3 22 22 C 1.54261 * 104.19803 * 37.94245 * 21 20 4 23 23 C 1.53882 * 106.59864 * 336.38906 * 22 21 20 24 24 H 1.09003 * 109.47046 * 59.99734 * 1 2 3 25 25 H 1.09002 * 109.46577 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46896 * 299.99859 * 1 2 3 27 27 H 1.09006 * 109.47115 * 240.00771 * 2 1 3 28 28 H 1.08993 * 109.47584 * 120.00222 * 2 1 3 29 29 H 1.09000 * 109.46937 * 84.84623 * 8 7 5 30 30 H 1.08999 * 109.47153 * 204.84441 * 8 7 5 31 31 H 1.09001 * 109.46926 * 324.84284 * 8 7 5 32 32 H 1.09004 * 109.47409 * 179.97438 * 11 9 7 33 33 H 1.09004 * 109.47063 * 299.99472 * 11 9 7 34 34 H 1.09000 * 109.47382 * 59.99260 * 11 9 7 35 35 H 0.96995 * 120.00599 * 179.97438 * 15 14 12 36 36 H 1.08999 * 110.75295 * 322.42015 * 20 4 3 37 37 H 1.08999 * 110.75474 * 199.05197 * 20 4 3 38 38 H 1.09002 * 110.48549 * 279.26207 * 21 20 4 39 39 H 1.09001 * 110.48420 * 156.61953 * 21 20 4 40 40 H 1.09004 * 110.03168 * 95.67356 * 22 21 20 41 41 H 1.08997 * 110.03418 * 217.05915 * 22 21 20 42 42 H 1.08995 * 110.02972 * 119.28517 * 23 22 21 43 43 H 1.08998 * 110.03035 * 240.71980 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4305 1.4603 0.0299 5 6 3.9846 0.8036 1.2680 6 8 5.0080 0.1560 1.2046 7 7 3.3427 0.9361 2.4456 8 6 2.1652 1.8021 2.5449 9 6 3.8227 0.2141 3.6266 10 1 4.7009 -0.3742 3.3608 11 6 4.1922 1.2165 4.7219 12 6 2.7379 -0.7027 4.1301 13 1 1.7862 -0.7439 3.6211 14 6 2.9601 -1.4890 5.2406 15 7 4.1191 -1.4393 5.8603 16 14 1.6156 -2.6260 5.8643 17 1 0.4167 -2.4969 4.9977 18 1 2.1003 -4.0294 5.8336 19 1 1.2608 -2.2553 7.2579 20 6 4.0509 0.8335 -1.2435 21 6 3.8754 1.9553 -2.2969 22 6 4.1389 3.2565 -1.5114 23 6 3.8560 2.9418 -0.0319 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.2786 1.2459 2.2405 30 1 2.0474 2.1384 3.5749 31 1 2.2938 2.6661 1.8929 32 1 4.5489 0.6794 5.6008 33 1 4.9769 1.8797 4.3578 34 1 3.3138 1.8047 4.9876 35 1 4.2754 -1.9922 6.6418 36 1 3.5045 -0.0624 -1.5385 37 1 5.1065 0.6102 -1.0892 38 1 2.8609 1.9490 -2.6955 39 1 4.6027 1.8410 -3.1007 40 1 5.1772 3.5641 -1.6359 41 1 3.4719 4.0449 -1.8603 42 1 4.7570 3.0966 0.5615 43 1 3.0511 3.5771 0.3376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338416076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:17 Heat of formation + Delta-G solvation = -106.350046 kcal Electronic energy + Delta-G solvation = -22820.721533 eV Core-core repulsion = 19672.094691 eV Total energy + Delta-G solvation = -3148.626842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.78612 -39.08084 -37.46492 -36.62575 -34.75434 -32.25280 -31.40643 -29.77088 -28.96678 -27.62555 -27.29882 -24.05451 -23.89004 -21.68639 -21.25006 -20.10833 -18.65487 -18.35081 -17.53050 -16.96660 -16.75855 -16.32401 -16.16558 -15.54492 -15.30481 -14.78420 -14.50555 -14.14716 -13.84641 -13.57958 -13.57183 -13.32416 -13.01064 -12.99708 -12.83734 -12.70297 -12.63125 -12.60663 -12.44580 -12.21756 -12.13512 -12.08087 -11.96568 -11.77484 -11.29771 -11.21297 -11.01519 -10.58081 -10.13734 -9.33398 -8.17135 -6.33875 1.38563 1.39626 1.51211 1.62163 2.22659 2.42767 2.61548 3.10597 3.40958 3.58864 3.72678 4.07390 4.15946 4.28774 4.39720 4.43491 4.48201 4.51861 4.55738 4.65272 4.74585 4.78005 4.79875 4.83125 4.85514 5.01871 5.02606 5.05005 5.06499 5.10723 5.19727 5.26455 5.31522 5.41444 5.48060 5.56446 5.64722 5.95208 6.12178 6.12992 6.73529 6.78811 7.25330 7.42212 8.87640 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023885 B = 0.006422 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.025488 B = 4358.861210 C = 4907.216485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.044 3.956 3 O -0.352 6.352 4 C 0.104 3.896 5 C 0.477 3.523 6 O -0.600 6.600 7 N -0.587 5.587 8 C 0.096 3.904 9 C 0.259 3.741 10 H 0.006 0.994 11 C -0.132 4.132 12 C -0.534 4.534 13 H 0.059 0.941 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.965 3.035 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.139 4.139 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.106 4.106 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.021 0.979 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.018 0.982 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 9.306 -14.051 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 O -0.271 6.271 4 C 0.061 3.939 5 C 0.265 3.735 6 O -0.482 6.482 7 N -0.317 5.317 8 C -0.046 4.046 9 C 0.158 3.842 10 H 0.024 0.976 11 C -0.191 4.191 12 C -0.572 4.572 13 H 0.077 0.923 14 C -0.185 4.185 15 N -0.557 5.557 16 Si 0.790 3.210 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.177 4.177 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.143 4.143 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.341 9.078 -13.894 17.767 hybrid contribution 0.075 -1.377 1.055 1.736 sum -6.266 7.702 -12.840 16.230 Atomic orbital electron populations 1.21688 0.91159 1.03132 1.03461 1.22633 0.97300 0.83738 0.99532 1.87938 1.18079 1.26663 1.94447 1.22555 0.82101 0.98401 0.90859 1.21909 0.84201 0.80974 0.86420 1.90599 1.26828 1.44336 1.86479 1.48226 1.29028 1.44881 1.09525 1.21801 0.87030 0.93607 1.02181 1.18579 0.94298 0.89915 0.81451 0.97580 1.21876 0.98543 0.97697 1.00948 1.21547 0.99978 1.23438 1.12277 0.92261 1.25751 0.97910 0.98260 0.96570 1.70030 1.24191 1.40707 1.20796 0.85406 0.79141 0.78101 0.78392 1.18786 1.21066 1.19914 1.22940 1.01206 0.99560 0.94006 1.22285 1.02859 0.92644 0.96730 1.22108 1.02720 0.98293 0.91911 1.22216 1.01609 0.90714 0.99802 0.90139 0.90313 0.92123 0.92539 0.96030 0.92676 0.91749 0.89748 0.91271 0.96267 0.93389 0.92615 0.91215 0.91259 0.90217 0.89778 0.90729 0.89045 0.91666 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 10.26 71.98 0.74 -2.43 16 2 C 0.04 1.33 5.06 71.98 0.36 1.70 16 3 O -0.35 -10.39 7.56 -148.98 -1.13 -11.52 16 4 C 0.10 3.32 0.34 -10.46 0.00 3.32 16 5 C 0.48 20.92 5.29 87.66 0.46 21.39 16 6 O -0.60 -31.72 15.08 -3.03 -0.05 -31.76 16 7 N -0.59 -26.28 2.37 -826.80 -1.96 -28.24 16 8 C 0.10 3.42 8.06 127.77 1.03 4.45 16 9 C 0.26 14.00 2.63 44.24 0.12 14.11 16 10 H 0.01 0.40 6.91 -2.39 -0.02 0.38 16 11 C -0.13 -6.61 8.96 71.98 0.64 -5.97 16 12 C -0.53 -29.60 8.37 25.60 0.21 -29.39 16 13 H 0.06 3.21 7.65 -2.91 -0.02 3.19 16 14 C 0.01 0.81 5.30 84.65 0.45 1.26 16 15 N -0.92 -53.71 11.32 21.45 0.24 -53.46 16 16 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 C -0.14 -4.04 5.64 31.89 0.18 -3.86 16 21 C -0.11 -2.16 6.81 31.67 0.22 -1.95 16 22 C -0.11 -2.14 6.80 31.32 0.21 -1.93 16 23 C -0.11 -2.70 5.46 31.32 0.17 -2.53 16 24 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 1.45 7.59 -2.39 -0.02 1.43 16 27 H 0.06 1.58 6.28 -2.38 -0.01 1.56 16 28 H 0.02 0.83 6.67 -2.39 -0.02 0.81 16 29 H 0.05 1.92 6.10 -2.39 -0.01 1.90 16 30 H 0.06 2.30 6.44 -2.39 -0.02 2.29 16 31 H 0.08 2.51 5.15 -2.39 -0.01 2.49 16 32 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 2.18 6.66 -2.39 -0.02 2.16 16 35 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.07 2.00 6.10 -2.39 -0.01 1.99 16 37 H 0.07 2.32 7.28 -2.39 -0.02 2.30 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.85 7.83 -2.39 -0.02 1.83 16 43 H 0.10 2.17 6.94 -2.39 -0.02 2.15 16 Total: -1.00 -68.66 325.11 4.92 -63.74 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.99 Total: 17.59 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 4.80 Total: -1.83 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -1.72 Total: -81.70 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -1.17 Total: -43.28 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.66 4.92 -63.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338416076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.609 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds