Wall clock time and date at job start Mon Mar 30 2020 00:44:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53006 * 109.47048 * 2 1
4 4 O 1.42897 * 109.47173 * 119.99606 * 2 1 3
5 5 C 1.42897 * 113.99954 * 104.00781 * 4 2 1
6 6 C 1.50701 * 112.85386 * 296.61601 * 5 4 2
7 7 O 1.21275 * 120.00188 * 129.01846 * 6 5 4
8 8 N 1.34779 * 119.99451 * 309.02201 * 6 5 4
9 9 C 1.46501 * 120.00332 * 4.00624 * 8 6 5
10 10 C 1.46508 * 119.99799 * 184.00459 * 8 6 5
11 11 H 1.08999 * 109.46476 * 0.02562 * 10 8 6
12 12 C 1.52997 * 109.47011 * 240.00306 * 10 8 6
13 13 C 1.50697 * 109.46811 * 119.99830 * 10 8 6
14 14 H 1.08003 * 119.99585 * 94.78510 * 13 10 8
15 15 C 1.37876 * 120.00079 * 274.77865 * 13 10 8
16 16 N 1.31510 * 120.00253 * 354.57391 * 15 13 10
17 17 Si 1.86801 * 119.99737 * 174.56555 * 15 13 10
18 18 H 1.48502 * 109.47164 * 90.00348 * 17 15 13
19 19 H 1.48502 * 109.47062 * 210.00266 * 17 15 13
20 20 H 1.48501 * 109.47415 * 330.00348 * 17 15 13
21 21 C 1.53781 * 113.61429 * 67.81155 * 5 4 2
22 22 C 1.53958 * 87.02022 * 89.22787 * 21 5 4
23 23 C 1.53778 * 87.11172 * 25.36268 * 22 21 5
24 24 H 1.09007 * 109.47286 * 62.58842 * 1 2 3
25 25 H 1.08994 * 109.47134 * 182.58820 * 1 2 3
26 26 H 1.09004 * 109.47263 * 302.58857 * 1 2 3
27 27 H 1.08998 * 109.47353 * 239.99490 * 2 1 3
28 28 H 1.09000 * 109.46999 * 180.02562 * 3 2 1
29 29 H 1.08997 * 109.46867 * 299.99426 * 3 2 1
30 30 H 1.08991 * 109.47357 * 59.99946 * 3 2 1
31 31 H 1.09002 * 109.46803 * 275.10814 * 9 8 6
32 32 H 1.08999 * 109.47113 * 35.10971 * 9 8 6
33 33 H 1.09002 * 109.46935 * 155.11126 * 9 8 6
34 34 H 1.08995 * 109.46811 * 174.60269 * 12 10 8
35 35 H 1.09005 * 109.46863 * 294.59602 * 12 10 8
36 36 H 1.08990 * 109.47388 * 54.59904 * 12 10 8
37 37 H 0.96998 * 120.00112 * 5.08508 * 16 15 13
38 38 H 1.08997 * 113.61691 * 203.74309 * 21 5 4
39 39 H 1.08997 * 113.61451 * 334.65572 * 21 5 4
40 40 H 1.08996 * 113.54048 * 270.81380 * 22 21 5
41 41 H 1.09001 * 113.74306 * 139.94571 * 22 21 5
42 42 H 1.08994 * 113.61839 * 220.09122 * 23 22 21
43 43 H 1.09008 * 113.68947 * 89.19681 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 8 2.0063 -0.6735 1.1668
5 6 2.4979 -1.9918 0.9169
6 6 1.4319 -2.9273 0.4076
7 8 1.6269 -3.5802 -0.5957
8 7 0.2617 -3.0383 1.0670
9 6 -0.0088 -2.1861 2.2276
10 6 -0.7398 -4.0111 0.6232
11 1 -0.3633 -4.5488 -0.2469
12 6 -2.0315 -3.2799 0.2519
13 6 -1.0179 -4.9887 1.7358
14 1 -1.8480 -4.8219 2.4063
15 6 -0.2128 -6.0963 1.8976
16 7 0.7308 -6.3573 1.0195
17 14 -0.4622 -7.2259 3.3642
18 1 -1.4331 -8.2919 3.0086
19 1 0.8352 -7.8433 3.7398
20 1 -0.9869 -6.4408 4.5103
21 6 3.7907 -2.0196 0.0846
22 6 4.5558 -1.9317 1.4177
23 6 3.3232 -2.5718 2.0778
24 1 -0.3634 0.4731 -0.9123
25 1 -0.3633 -1.0266 0.0464
26 1 -0.3634 0.5535 0.8659
27 1 1.8933 -0.5139 -0.8899
28 1 3.1300 1.4426 -0.0005
29 1 1.6767 1.9563 -0.8900
30 1 1.6767 1.9564 0.8899
31 1 0.4196 -2.6416 3.1205
32 1 0.4386 -1.2048 2.0700
33 1 -1.0858 -2.0782 2.3559
34 1 -2.7432 -3.9905 -0.1682
35 1 -2.4589 -2.8218 1.1439
36 1 -1.8125 -2.5066 -0.4843
37 1 0.9093 -5.7326 0.2993
38 1 3.9474 -2.9579 -0.4475
39 1 3.9191 -1.1442 -0.5520
40 1 4.7445 -0.9092 1.7447
41 1 5.4463 -2.5591 1.4549
42 1 3.0744 -2.1416 3.0479
43 1 3.3504 -3.6614 2.0924
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001339162416.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:29
Heat of formation + Delta-G solvation = -61.873992 kcal
Electronic energy + Delta-G solvation = -23243.450175 eV
Core-core repulsion = 20096.751960 eV
Total energy + Delta-G solvation = -3146.698216 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.48365 -37.67672 -36.40153 -35.04245 -32.59943 -32.03574 -29.90573 -27.21786
-26.08174 -25.54181 -25.38095 -24.54516 -21.55982 -21.24792 -19.49347 -18.78867
-16.86018 -16.70714 -15.81674 -15.46433 -15.09924 -14.46405 -14.27461 -13.77584
-13.71275 -13.35080 -13.31806 -13.01950 -12.44478 -12.26484 -12.16601 -11.89324
-11.84902 -11.58675 -11.38698 -11.32260 -11.02731 -10.90827 -10.84083 -10.80486
-10.72039 -10.56477 -10.24066 -10.16160 -9.78138 -9.55038 -9.01125 -8.48528
-8.29532 -7.30554 -6.37669 -4.17747 3.32535 3.40126 3.42453 3.58772
3.74682 4.08783 4.48918 4.75602 4.86608 4.97741 5.08614 5.14709
5.22645 5.33974 5.43116 5.50756 5.62939 5.82580 5.85734 5.87651
5.93732 6.02378 6.09881 6.11563 6.15002 6.24426 6.28613 6.31335
6.35694 6.40321 6.50231 6.54040 6.58120 6.68875 6.98400 7.26095
7.36107 7.81691 8.06703 8.36551 8.64774 8.86180 9.21424 9.61517
11.01661
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.021596 B = 0.007586 C = 0.006481
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.207527 B = 3689.956159 C = 4319.015095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.076 3.924
3 C -0.150 4.150
4 O -0.344 6.344
5 C 0.072 3.928
6 C 0.494 3.506
7 O -0.554 6.554
8 N -0.575 5.575
9 C 0.072 3.928
10 C 0.224 3.776
11 H 0.066 0.934
12 C -0.139 4.139
13 C -0.605 4.605
14 H 0.051 0.949
15 C 0.030 3.970
16 N -0.895 5.895
17 Si 1.067 2.933
18 H -0.287 1.287
19 H -0.284 1.284
20 H -0.288 1.288
21 C -0.143 4.143
22 C -0.134 4.134
23 C -0.113 4.113
24 H 0.059 0.941
25 H 0.077 0.923
26 H 0.061 0.939
27 H 0.065 0.935
28 H 0.058 0.942
29 H 0.065 0.935
30 H 0.062 0.938
31 H 0.040 0.960
32 H 0.084 0.916
33 H 0.058 0.942
34 H 0.052 0.948
35 H 0.043 0.957
36 H 0.028 0.972
37 H 0.288 0.712
38 H 0.101 0.899
39 H 0.069 0.931
40 H 0.082 0.918
41 H 0.070 0.930
42 H 0.080 0.920
43 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.511 13.327 0.903 13.811
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C 0.019 3.981
3 C -0.207 4.207
4 O -0.264 6.264
5 C 0.029 3.971
6 C 0.279 3.721
7 O -0.433 6.433
8 N -0.306 5.306
9 C -0.072 4.072
10 C 0.126 3.874
11 H 0.084 0.916
12 C -0.197 4.197
13 C -0.644 4.644
14 H 0.069 0.931
15 C -0.179 4.179
16 N -0.529 5.529
17 Si 0.895 3.105
18 H -0.213 1.213
19 H -0.210 1.210
20 H -0.214 1.214
21 C -0.181 4.181
22 C -0.171 4.171
23 C -0.151 4.151
24 H 0.078 0.922
25 H 0.096 0.904
26 H 0.080 0.920
27 H 0.083 0.917
28 H 0.077 0.923
29 H 0.084 0.916
30 H 0.081 0.919
31 H 0.058 0.942
32 H 0.102 0.898
33 H 0.076 0.924
34 H 0.071 0.929
35 H 0.062 0.938
36 H 0.047 0.953
37 H 0.102 0.898
38 H 0.120 0.880
39 H 0.088 0.912
40 H 0.100 0.900
41 H 0.088 0.912
42 H 0.098 0.902
43 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 4.085 11.658 1.234 12.415
hybrid contribution -0.699 1.332 -0.679 1.651
sum 3.385 12.990 0.555 13.435
Atomic orbital electron populations
1.22469 0.95338 1.04270 1.01725 1.22075 0.94242 0.93018 0.88790
1.21946 1.01417 0.95102 1.02235 1.87860 1.80620 1.26015 1.31883
1.22952 0.91954 0.83243 0.98979 1.20677 0.83608 0.83724 0.84076
1.90611 1.79488 1.47558 1.25690 1.49235 1.16257 1.36956 1.28161
1.21913 1.01091 0.95021 0.89160 1.19086 0.84251 0.86690 0.97346
0.91589 1.21998 0.99371 0.99168 0.99153 1.22131 1.16153 1.09376
1.16717 0.93067 1.25869 0.93503 0.97582 1.00942 1.70625 1.30435
1.38213 1.13649 0.83598 0.76241 0.75601 0.75045 1.21337 1.21017
1.21413 1.23377 0.94417 1.03546 0.96787 1.22811 0.97041 1.01020
0.96272 1.22915 0.93927 1.01233 0.96995 0.92221 0.90382 0.92009
0.91706 0.92309 0.91622 0.91893 0.94177 0.89818 0.92369 0.92857
0.93816 0.95304 0.89837 0.88023 0.91218 0.89970 0.91163 0.90180
0.88262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.58 8.21 37.16 0.30 -2.27 16
2 C 0.08 1.09 2.61 -26.73 -0.07 1.02 16
3 C -0.15 -1.65 9.56 37.16 0.36 -1.29 16
4 O -0.34 -5.53 7.33 -35.23 -0.26 -5.79 16
5 C 0.07 1.29 0.31 -90.96 -0.03 1.26 16
6 C 0.49 11.10 5.64 -10.98 -0.06 11.04 16
7 O -0.55 -14.42 14.21 5.56 0.08 -14.34 16
8 N -0.58 -12.95 1.77 -175.26 -0.31 -13.26 16
9 C 0.07 1.39 8.27 59.85 0.50 1.88 16
10 C 0.22 5.67 2.39 -69.08 -0.17 5.50 16
11 H 0.07 1.92 5.46 -51.93 -0.28 1.64 16
12 C -0.14 -2.96 8.89 37.16 0.33 -2.62 16
13 C -0.60 -16.51 8.10 -34.44 -0.28 -16.79 16
14 H 0.05 1.38 7.81 -52.48 -0.41 0.97 16
15 C 0.03 0.86 5.45 -17.82 -0.10 0.76 16
16 N -0.89 -27.36 13.63 55.43 0.76 -26.60 16
17 Si 1.07 24.97 29.91 -169.99 -5.08 19.89 16
18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16
19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16
21 C -0.14 -2.31 6.74 -25.83 -0.17 -2.49 16
22 C -0.13 -1.86 8.02 -25.83 -0.21 -2.07 16
23 C -0.11 -1.90 7.44 -25.92 -0.19 -2.09 16
24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
25 H 0.08 1.35 4.13 -51.93 -0.21 1.13 16
26 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16
27 H 0.06 1.02 6.76 -51.93 -0.35 0.66 16
28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
32 H 0.08 1.45 3.66 -51.93 -0.19 1.26 16
33 H 0.06 1.09 6.54 -51.93 -0.34 0.75 16
34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16
35 H 0.04 0.87 6.88 -51.93 -0.36 0.51 16
36 H 0.03 0.56 7.21 -51.93 -0.37 0.19 16
37 H 0.29 9.06 5.48 -40.82 -0.22 8.84 16
38 H 0.10 1.84 7.46 -51.93 -0.39 1.45 16
39 H 0.07 1.01 7.34 -51.93 -0.38 0.63 16
40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16
42 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16
43 H 0.10 1.89 8.09 -51.92 -0.42 1.47 16
LS Contribution 327.99 15.07 4.94 4.94
Total: -1.00 -31.29 327.99 -6.62 -37.90
By element:
Atomic # 1 Polarization: 12.36 SS G_CDS: -6.95 Total: 5.41 kcal
Atomic # 6 Polarization: -8.37 SS G_CDS: 0.21 Total: -8.16 kcal
Atomic # 7 Polarization: -40.31 SS G_CDS: 0.44 Total: -39.86 kcal
Atomic # 8 Polarization: -19.95 SS G_CDS: -0.18 Total: -20.12 kcal
Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -31.29 -6.62 -37.90 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001339162416.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.969 kcal
(2) G-P(sol) polarization free energy of solvation -31.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.257 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds