Wall clock time and date at job start Mon Mar 30 2020 00:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47048 * 2 1 4 4 O 1.42897 * 109.47173 * 119.99606 * 2 1 3 5 5 C 1.42897 * 113.99954 * 104.00781 * 4 2 1 6 6 C 1.50701 * 112.85386 * 296.61601 * 5 4 2 7 7 O 1.21275 * 120.00188 * 129.01846 * 6 5 4 8 8 N 1.34779 * 119.99451 * 309.02201 * 6 5 4 9 9 C 1.46501 * 120.00332 * 4.00624 * 8 6 5 10 10 C 1.46508 * 119.99799 * 184.00459 * 8 6 5 11 11 H 1.08999 * 109.46476 * 0.02562 * 10 8 6 12 12 C 1.52997 * 109.47011 * 240.00306 * 10 8 6 13 13 C 1.50697 * 109.46811 * 119.99830 * 10 8 6 14 14 H 1.08003 * 119.99585 * 94.78510 * 13 10 8 15 15 C 1.37876 * 120.00079 * 274.77865 * 13 10 8 16 16 N 1.31510 * 120.00253 * 354.57391 * 15 13 10 17 17 Si 1.86801 * 119.99737 * 174.56555 * 15 13 10 18 18 H 1.48502 * 109.47164 * 90.00348 * 17 15 13 19 19 H 1.48502 * 109.47062 * 210.00266 * 17 15 13 20 20 H 1.48501 * 109.47415 * 330.00348 * 17 15 13 21 21 C 1.53781 * 113.61429 * 67.81155 * 5 4 2 22 22 C 1.53958 * 87.02022 * 89.22787 * 21 5 4 23 23 C 1.53778 * 87.11172 * 25.36268 * 22 21 5 24 24 H 1.09007 * 109.47286 * 62.58842 * 1 2 3 25 25 H 1.08994 * 109.47134 * 182.58820 * 1 2 3 26 26 H 1.09004 * 109.47263 * 302.58857 * 1 2 3 27 27 H 1.08998 * 109.47353 * 239.99490 * 2 1 3 28 28 H 1.09000 * 109.46999 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46867 * 299.99426 * 3 2 1 30 30 H 1.08991 * 109.47357 * 59.99946 * 3 2 1 31 31 H 1.09002 * 109.46803 * 275.10814 * 9 8 6 32 32 H 1.08999 * 109.47113 * 35.10971 * 9 8 6 33 33 H 1.09002 * 109.46935 * 155.11126 * 9 8 6 34 34 H 1.08995 * 109.46811 * 174.60269 * 12 10 8 35 35 H 1.09005 * 109.46863 * 294.59602 * 12 10 8 36 36 H 1.08990 * 109.47388 * 54.59904 * 12 10 8 37 37 H 0.96998 * 120.00112 * 5.08508 * 16 15 13 38 38 H 1.08997 * 113.61691 * 203.74309 * 21 5 4 39 39 H 1.08997 * 113.61451 * 334.65572 * 21 5 4 40 40 H 1.08996 * 113.54048 * 270.81380 * 22 21 5 41 41 H 1.09001 * 113.74306 * 139.94571 * 22 21 5 42 42 H 1.08994 * 113.61839 * 220.09122 * 23 22 21 43 43 H 1.09008 * 113.68947 * 89.19681 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.4979 -1.9918 0.9169 6 6 1.4319 -2.9273 0.4076 7 8 1.6269 -3.5802 -0.5957 8 7 0.2617 -3.0383 1.0670 9 6 -0.0088 -2.1861 2.2276 10 6 -0.7398 -4.0111 0.6232 11 1 -0.3633 -4.5488 -0.2469 12 6 -2.0315 -3.2799 0.2519 13 6 -1.0179 -4.9887 1.7358 14 1 -1.8480 -4.8219 2.4063 15 6 -0.2128 -6.0963 1.8976 16 7 0.7308 -6.3573 1.0195 17 14 -0.4622 -7.2259 3.3642 18 1 -1.4331 -8.2919 3.0086 19 1 0.8352 -7.8433 3.7398 20 1 -0.9869 -6.4408 4.5103 21 6 3.7907 -2.0196 0.0846 22 6 4.5558 -1.9317 1.4177 23 6 3.3232 -2.5718 2.0778 24 1 -0.3634 0.4731 -0.9123 25 1 -0.3633 -1.0266 0.0464 26 1 -0.3634 0.5535 0.8659 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.4196 -2.6416 3.1205 32 1 0.4386 -1.2048 2.0700 33 1 -1.0858 -2.0782 2.3559 34 1 -2.7432 -3.9905 -0.1682 35 1 -2.4589 -2.8218 1.1439 36 1 -1.8125 -2.5066 -0.4843 37 1 0.9093 -5.7326 0.2993 38 1 3.9474 -2.9579 -0.4475 39 1 3.9191 -1.1442 -0.5520 40 1 4.7445 -0.9092 1.7447 41 1 5.4463 -2.5591 1.4549 42 1 3.0744 -2.1416 3.0479 43 1 3.3504 -3.6614 2.0924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339162416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:29 Heat of formation + Delta-G solvation = -61.873992 kcal Electronic energy + Delta-G solvation = -23243.450175 eV Core-core repulsion = 20096.751960 eV Total energy + Delta-G solvation = -3146.698216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48365 -37.67672 -36.40153 -35.04245 -32.59943 -32.03574 -29.90573 -27.21786 -26.08174 -25.54181 -25.38095 -24.54516 -21.55982 -21.24792 -19.49347 -18.78867 -16.86018 -16.70714 -15.81674 -15.46433 -15.09924 -14.46405 -14.27461 -13.77584 -13.71275 -13.35080 -13.31806 -13.01950 -12.44478 -12.26484 -12.16601 -11.89324 -11.84902 -11.58675 -11.38698 -11.32260 -11.02731 -10.90827 -10.84083 -10.80486 -10.72039 -10.56477 -10.24066 -10.16160 -9.78138 -9.55038 -9.01125 -8.48528 -8.29532 -7.30554 -6.37669 -4.17747 3.32535 3.40126 3.42453 3.58772 3.74682 4.08783 4.48918 4.75602 4.86608 4.97741 5.08614 5.14709 5.22645 5.33974 5.43116 5.50756 5.62939 5.82580 5.85734 5.87651 5.93732 6.02378 6.09881 6.11563 6.15002 6.24426 6.28613 6.31335 6.35694 6.40321 6.50231 6.54040 6.58120 6.68875 6.98400 7.26095 7.36107 7.81691 8.06703 8.36551 8.64774 8.86180 9.21424 9.61517 11.01661 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.007586 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.207527 B = 3689.956159 C = 4319.015095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.076 3.924 3 C -0.150 4.150 4 O -0.344 6.344 5 C 0.072 3.928 6 C 0.494 3.506 7 O -0.554 6.554 8 N -0.575 5.575 9 C 0.072 3.928 10 C 0.224 3.776 11 H 0.066 0.934 12 C -0.139 4.139 13 C -0.605 4.605 14 H 0.051 0.949 15 C 0.030 3.970 16 N -0.895 5.895 17 Si 1.067 2.933 18 H -0.287 1.287 19 H -0.284 1.284 20 H -0.288 1.288 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.113 4.113 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.028 0.972 37 H 0.288 0.712 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 13.327 0.903 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.019 3.981 3 C -0.207 4.207 4 O -0.264 6.264 5 C 0.029 3.971 6 C 0.279 3.721 7 O -0.433 6.433 8 N -0.306 5.306 9 C -0.072 4.072 10 C 0.126 3.874 11 H 0.084 0.916 12 C -0.197 4.197 13 C -0.644 4.644 14 H 0.069 0.931 15 C -0.179 4.179 16 N -0.529 5.529 17 Si 0.895 3.105 18 H -0.213 1.213 19 H -0.210 1.210 20 H -0.214 1.214 21 C -0.181 4.181 22 C -0.171 4.171 23 C -0.151 4.151 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.085 11.658 1.234 12.415 hybrid contribution -0.699 1.332 -0.679 1.651 sum 3.385 12.990 0.555 13.435 Atomic orbital electron populations 1.22469 0.95338 1.04270 1.01725 1.22075 0.94242 0.93018 0.88790 1.21946 1.01417 0.95102 1.02235 1.87860 1.80620 1.26015 1.31883 1.22952 0.91954 0.83243 0.98979 1.20677 0.83608 0.83724 0.84076 1.90611 1.79488 1.47558 1.25690 1.49235 1.16257 1.36956 1.28161 1.21913 1.01091 0.95021 0.89160 1.19086 0.84251 0.86690 0.97346 0.91589 1.21998 0.99371 0.99168 0.99153 1.22131 1.16153 1.09376 1.16717 0.93067 1.25869 0.93503 0.97582 1.00942 1.70625 1.30435 1.38213 1.13649 0.83598 0.76241 0.75601 0.75045 1.21337 1.21017 1.21413 1.23377 0.94417 1.03546 0.96787 1.22811 0.97041 1.01020 0.96272 1.22915 0.93927 1.01233 0.96995 0.92221 0.90382 0.92009 0.91706 0.92309 0.91622 0.91893 0.94177 0.89818 0.92369 0.92857 0.93816 0.95304 0.89837 0.88023 0.91218 0.89970 0.91163 0.90180 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 8.21 37.16 0.30 -2.27 16 2 C 0.08 1.09 2.61 -26.73 -0.07 1.02 16 3 C -0.15 -1.65 9.56 37.16 0.36 -1.29 16 4 O -0.34 -5.53 7.33 -35.23 -0.26 -5.79 16 5 C 0.07 1.29 0.31 -90.96 -0.03 1.26 16 6 C 0.49 11.10 5.64 -10.98 -0.06 11.04 16 7 O -0.55 -14.42 14.21 5.56 0.08 -14.34 16 8 N -0.58 -12.95 1.77 -175.26 -0.31 -13.26 16 9 C 0.07 1.39 8.27 59.85 0.50 1.88 16 10 C 0.22 5.67 2.39 -69.08 -0.17 5.50 16 11 H 0.07 1.92 5.46 -51.93 -0.28 1.64 16 12 C -0.14 -2.96 8.89 37.16 0.33 -2.62 16 13 C -0.60 -16.51 8.10 -34.44 -0.28 -16.79 16 14 H 0.05 1.38 7.81 -52.48 -0.41 0.97 16 15 C 0.03 0.86 5.45 -17.82 -0.10 0.76 16 16 N -0.89 -27.36 13.63 55.43 0.76 -26.60 16 17 Si 1.07 24.97 29.91 -169.99 -5.08 19.89 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.14 -2.31 6.74 -25.83 -0.17 -2.49 16 22 C -0.13 -1.86 8.02 -25.83 -0.21 -2.07 16 23 C -0.11 -1.90 7.44 -25.92 -0.19 -2.09 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.35 4.13 -51.93 -0.21 1.13 16 26 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.06 1.02 6.76 -51.93 -0.35 0.66 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.45 3.66 -51.93 -0.19 1.26 16 33 H 0.06 1.09 6.54 -51.93 -0.34 0.75 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.04 0.87 6.88 -51.93 -0.36 0.51 16 36 H 0.03 0.56 7.21 -51.93 -0.37 0.19 16 37 H 0.29 9.06 5.48 -40.82 -0.22 8.84 16 38 H 0.10 1.84 7.46 -51.93 -0.39 1.45 16 39 H 0.07 1.01 7.34 -51.93 -0.38 0.63 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.10 1.89 8.09 -51.92 -0.42 1.47 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -31.29 327.99 -6.62 -37.90 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.95 Total: 5.41 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 0.21 Total: -8.16 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.44 Total: -39.86 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.18 Total: -20.12 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.29 -6.62 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339162416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.969 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds