Wall clock time and date at job start Mon Mar 30 2020 00:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47048 * 2 1 4 4 O 1.42897 * 109.47173 * 119.99606 * 2 1 3 5 5 C 1.42897 * 113.99954 * 104.00781 * 4 2 1 6 6 C 1.50701 * 112.85386 * 296.61601 * 5 4 2 7 7 O 1.21275 * 120.00188 * 129.01846 * 6 5 4 8 8 N 1.34779 * 119.99451 * 309.02201 * 6 5 4 9 9 C 1.46501 * 120.00332 * 4.00624 * 8 6 5 10 10 C 1.46508 * 119.99799 * 184.00459 * 8 6 5 11 11 H 1.08999 * 109.46476 * 0.02562 * 10 8 6 12 12 C 1.52997 * 109.47011 * 240.00306 * 10 8 6 13 13 C 1.50697 * 109.46811 * 119.99830 * 10 8 6 14 14 H 1.08003 * 119.99585 * 94.78510 * 13 10 8 15 15 C 1.37876 * 120.00079 * 274.77865 * 13 10 8 16 16 N 1.31510 * 120.00253 * 354.57391 * 15 13 10 17 17 Si 1.86801 * 119.99737 * 174.56555 * 15 13 10 18 18 H 1.48502 * 109.47164 * 90.00348 * 17 15 13 19 19 H 1.48502 * 109.47062 * 210.00266 * 17 15 13 20 20 H 1.48501 * 109.47415 * 330.00348 * 17 15 13 21 21 C 1.53781 * 113.61429 * 67.81155 * 5 4 2 22 22 C 1.53958 * 87.02022 * 89.22787 * 21 5 4 23 23 C 1.53778 * 87.11172 * 25.36268 * 22 21 5 24 24 H 1.09007 * 109.47286 * 62.58842 * 1 2 3 25 25 H 1.08994 * 109.47134 * 182.58820 * 1 2 3 26 26 H 1.09004 * 109.47263 * 302.58857 * 1 2 3 27 27 H 1.08998 * 109.47353 * 239.99490 * 2 1 3 28 28 H 1.09000 * 109.46999 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46867 * 299.99426 * 3 2 1 30 30 H 1.08991 * 109.47357 * 59.99946 * 3 2 1 31 31 H 1.09002 * 109.46803 * 275.10814 * 9 8 6 32 32 H 1.08999 * 109.47113 * 35.10971 * 9 8 6 33 33 H 1.09002 * 109.46935 * 155.11126 * 9 8 6 34 34 H 1.08995 * 109.46811 * 174.60269 * 12 10 8 35 35 H 1.09005 * 109.46863 * 294.59602 * 12 10 8 36 36 H 1.08990 * 109.47388 * 54.59904 * 12 10 8 37 37 H 0.96998 * 120.00112 * 5.08508 * 16 15 13 38 38 H 1.08997 * 113.61691 * 203.74309 * 21 5 4 39 39 H 1.08997 * 113.61451 * 334.65572 * 21 5 4 40 40 H 1.08996 * 113.54048 * 270.81380 * 22 21 5 41 41 H 1.09001 * 113.74306 * 139.94571 * 22 21 5 42 42 H 1.08994 * 113.61839 * 220.09122 * 23 22 21 43 43 H 1.09008 * 113.68947 * 89.19681 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.4979 -1.9918 0.9169 6 6 1.4319 -2.9273 0.4076 7 8 1.6269 -3.5802 -0.5957 8 7 0.2617 -3.0383 1.0670 9 6 -0.0088 -2.1861 2.2276 10 6 -0.7398 -4.0111 0.6232 11 1 -0.3633 -4.5488 -0.2469 12 6 -2.0315 -3.2799 0.2519 13 6 -1.0179 -4.9887 1.7358 14 1 -1.8480 -4.8219 2.4063 15 6 -0.2128 -6.0963 1.8976 16 7 0.7308 -6.3573 1.0195 17 14 -0.4622 -7.2259 3.3642 18 1 -1.4331 -8.2919 3.0086 19 1 0.8352 -7.8433 3.7398 20 1 -0.9869 -6.4408 4.5103 21 6 3.7907 -2.0196 0.0846 22 6 4.5558 -1.9317 1.4177 23 6 3.3232 -2.5718 2.0778 24 1 -0.3634 0.4731 -0.9123 25 1 -0.3633 -1.0266 0.0464 26 1 -0.3634 0.5535 0.8659 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.4196 -2.6416 3.1205 32 1 0.4386 -1.2048 2.0700 33 1 -1.0858 -2.0782 2.3559 34 1 -2.7432 -3.9905 -0.1682 35 1 -2.4589 -2.8218 1.1439 36 1 -1.8125 -2.5066 -0.4843 37 1 0.9093 -5.7326 0.2993 38 1 3.9474 -2.9579 -0.4475 39 1 3.9191 -1.1442 -0.5520 40 1 4.7445 -0.9092 1.7447 41 1 5.4463 -2.5591 1.4549 42 1 3.0744 -2.1416 3.0479 43 1 3.3504 -3.6614 2.0924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339162416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:29 Heat of formation + Delta-G solvation = -80.444687 kcal Electronic energy + Delta-G solvation = -23244.255461 eV Core-core repulsion = 20096.751960 eV Total energy + Delta-G solvation = -3147.503502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.97552 -39.34035 -37.75993 -36.82841 -34.62126 -33.19291 -31.79042 -28.30334 -27.66430 -26.91627 -26.83035 -26.62555 -23.30442 -22.40338 -21.09280 -20.25808 -18.78141 -18.43198 -17.27382 -17.11832 -16.46570 -15.85079 -15.71158 -15.63115 -15.38698 -15.10261 -14.57850 -14.52648 -13.82548 -13.80289 -13.55378 -13.40683 -13.20726 -13.02745 -12.90467 -12.74036 -12.66953 -12.59794 -12.33255 -12.23864 -11.98871 -11.92330 -11.76340 -11.73801 -11.53316 -11.09311 -10.94338 -10.55005 -10.02286 -9.17271 -8.61441 -6.42370 1.49089 1.56339 1.67809 1.74965 2.33563 2.41859 2.54720 3.28372 3.41339 3.58161 3.67379 3.75998 3.98487 4.11431 4.17736 4.24673 4.40795 4.53548 4.60674 4.62112 4.67716 4.70352 4.71962 4.80769 4.84575 4.87049 4.89837 4.93521 4.97743 5.05096 5.08529 5.17877 5.25197 5.28929 5.33900 5.37028 5.81789 6.01160 6.14019 6.17333 6.55640 6.86871 7.42861 7.46697 8.75917 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.007586 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.207527 B = 3689.956159 C = 4319.015095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 C -0.141 4.141 4 O -0.338 6.338 5 C 0.076 3.924 6 C 0.484 3.516 7 O -0.600 6.600 8 N -0.577 5.577 9 C 0.076 3.924 10 C 0.222 3.778 11 H 0.017 0.983 12 C -0.127 4.127 13 C -0.608 4.608 14 H 0.056 0.944 15 C -0.021 4.021 16 N -0.931 5.931 17 Si 1.114 2.886 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.119 4.119 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.270 0.730 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 15.953 2.570 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.011 3.989 3 C -0.198 4.198 4 O -0.257 6.257 5 C 0.033 3.967 6 C 0.271 3.729 7 O -0.483 6.483 8 N -0.307 5.307 9 C -0.066 4.066 10 C 0.122 3.878 11 H 0.035 0.965 12 C -0.185 4.185 13 C -0.647 4.647 14 H 0.074 0.926 15 C -0.223 4.223 16 N -0.568 5.568 17 Si 0.936 3.064 18 H -0.199 1.199 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.183 4.183 22 C -0.145 4.145 23 C -0.157 4.157 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.132 14.328 2.920 15.195 hybrid contribution -0.799 0.588 -1.280 1.619 sum 3.333 14.916 1.641 15.372 Atomic orbital electron populations 1.22455 0.95316 1.02537 1.03412 1.22323 0.94393 0.94739 0.87427 1.21901 1.01909 0.92348 1.03608 1.87849 1.80605 1.24469 1.32826 1.22853 0.90618 0.83300 0.99960 1.21548 0.84081 0.83876 0.83371 1.90578 1.80295 1.49582 1.27844 1.48918 1.16034 1.36649 1.29069 1.22054 1.01819 0.95344 0.87403 1.18881 0.86161 0.87577 0.95170 0.96453 1.21850 0.97289 0.99134 1.00223 1.22421 1.15798 1.09780 1.16709 0.92601 1.27309 0.92828 0.99653 1.02533 1.70754 1.32757 1.38559 1.14727 0.83006 0.76279 0.74502 0.72654 1.19948 1.21520 1.18905 1.23352 0.93856 1.02984 0.98083 1.22768 0.95998 1.02515 0.93235 1.22910 0.95660 0.99542 0.97572 0.90509 0.93654 0.90442 0.93554 0.91529 0.89814 0.90943 0.94942 0.87432 0.91551 0.92887 0.92080 0.94047 0.91800 0.90893 0.89262 0.87085 0.89605 0.88630 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.75 8.21 71.98 0.59 -4.16 16 2 C 0.07 1.81 2.61 30.59 0.08 1.89 16 3 C -0.14 -2.56 9.56 71.98 0.69 -1.87 16 4 O -0.34 -10.11 7.33 -148.98 -1.09 -11.20 16 5 C 0.08 2.70 0.31 -11.01 0.00 2.69 16 6 C 0.48 22.50 5.64 87.66 0.49 23.00 16 7 O -0.60 -33.29 14.21 -3.01 -0.04 -33.33 16 8 N -0.58 -26.48 1.77 -826.78 -1.47 -27.94 16 9 C 0.08 2.87 8.27 127.77 1.06 3.93 16 10 C 0.22 11.56 2.39 44.24 0.11 11.67 16 11 H 0.02 1.08 5.46 -2.39 -0.01 1.06 16 12 C -0.13 -5.39 8.89 71.98 0.64 -4.75 16 13 C -0.61 -33.68 8.10 25.60 0.21 -33.47 16 14 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 15 C -0.02 -1.24 5.45 84.66 0.46 -0.78 16 16 N -0.93 -59.58 13.63 21.45 0.29 -59.29 16 17 Si 1.11 50.53 29.91 68.60 2.05 52.58 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 C -0.14 -4.59 6.74 31.18 0.21 -4.38 16 22 C -0.11 -2.74 8.02 31.18 0.25 -2.49 16 23 C -0.12 -3.92 7.44 31.12 0.23 -3.69 16 24 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.04 1.51 4.13 -2.39 -0.01 1.50 16 26 H 0.08 1.78 8.07 -2.38 -0.02 1.76 16 27 H 0.05 1.41 6.76 -2.39 -0.02 1.39 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 3.52 3.66 -2.39 -0.01 3.52 16 33 H 0.07 2.37 6.54 -2.39 -0.02 2.36 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.35 6.88 -2.38 -0.02 2.34 16 36 H 0.04 1.62 7.21 -2.39 -0.02 1.61 16 37 H 0.27 18.10 5.48 -92.71 -0.51 17.59 16 38 H 0.07 2.75 7.46 -2.39 -0.02 2.73 16 39 H 0.09 2.44 7.34 -2.39 -0.02 2.42 16 40 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.07 2.61 8.09 -2.38 -0.02 2.59 16 Total: -1.00 -71.94 327.99 6.00 -65.94 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 1.24 Total: 25.68 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 5.01 Total: -12.42 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -1.17 Total: -87.24 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.13 Total: -44.53 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -71.94 6.00 -65.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339162416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.508 kcal (2) G-P(sol) polarization free energy of solvation -71.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds