Wall clock time and date at job start Mon Mar 30 2020 00:44:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53006 * 109.47048 * 2 1
4 4 O 1.42897 * 109.47173 * 119.99606 * 2 1 3
5 5 C 1.42897 * 113.99954 * 104.00781 * 4 2 1
6 6 C 1.50701 * 112.85386 * 296.61601 * 5 4 2
7 7 O 1.21275 * 120.00188 * 129.01846 * 6 5 4
8 8 N 1.34779 * 119.99451 * 309.02201 * 6 5 4
9 9 C 1.46501 * 120.00332 * 4.00624 * 8 6 5
10 10 C 1.46508 * 119.99799 * 184.00459 * 8 6 5
11 11 H 1.08999 * 109.46476 * 0.02562 * 10 8 6
12 12 C 1.52997 * 109.47011 * 240.00306 * 10 8 6
13 13 C 1.50697 * 109.46811 * 119.99830 * 10 8 6
14 14 H 1.08003 * 119.99585 * 94.78510 * 13 10 8
15 15 C 1.37876 * 120.00079 * 274.77865 * 13 10 8
16 16 N 1.31510 * 120.00253 * 354.57391 * 15 13 10
17 17 Si 1.86801 * 119.99737 * 174.56555 * 15 13 10
18 18 H 1.48502 * 109.47164 * 90.00348 * 17 15 13
19 19 H 1.48502 * 109.47062 * 210.00266 * 17 15 13
20 20 H 1.48501 * 109.47415 * 330.00348 * 17 15 13
21 21 C 1.53781 * 113.61429 * 67.81155 * 5 4 2
22 22 C 1.53958 * 87.02022 * 89.22787 * 21 5 4
23 23 C 1.53778 * 87.11172 * 25.36268 * 22 21 5
24 24 H 1.09007 * 109.47286 * 62.58842 * 1 2 3
25 25 H 1.08994 * 109.47134 * 182.58820 * 1 2 3
26 26 H 1.09004 * 109.47263 * 302.58857 * 1 2 3
27 27 H 1.08998 * 109.47353 * 239.99490 * 2 1 3
28 28 H 1.09000 * 109.46999 * 180.02562 * 3 2 1
29 29 H 1.08997 * 109.46867 * 299.99426 * 3 2 1
30 30 H 1.08991 * 109.47357 * 59.99946 * 3 2 1
31 31 H 1.09002 * 109.46803 * 275.10814 * 9 8 6
32 32 H 1.08999 * 109.47113 * 35.10971 * 9 8 6
33 33 H 1.09002 * 109.46935 * 155.11126 * 9 8 6
34 34 H 1.08995 * 109.46811 * 174.60269 * 12 10 8
35 35 H 1.09005 * 109.46863 * 294.59602 * 12 10 8
36 36 H 1.08990 * 109.47388 * 54.59904 * 12 10 8
37 37 H 0.96998 * 120.00112 * 5.08508 * 16 15 13
38 38 H 1.08997 * 113.61691 * 203.74309 * 21 5 4
39 39 H 1.08997 * 113.61451 * 334.65572 * 21 5 4
40 40 H 1.08996 * 113.54048 * 270.81380 * 22 21 5
41 41 H 1.09001 * 113.74306 * 139.94571 * 22 21 5
42 42 H 1.08994 * 113.61839 * 220.09122 * 23 22 21
43 43 H 1.09008 * 113.68947 * 89.19681 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 8 2.0063 -0.6735 1.1668
5 6 2.4979 -1.9918 0.9169
6 6 1.4319 -2.9273 0.4076
7 8 1.6269 -3.5802 -0.5957
8 7 0.2617 -3.0383 1.0670
9 6 -0.0088 -2.1861 2.2276
10 6 -0.7398 -4.0111 0.6232
11 1 -0.3633 -4.5488 -0.2469
12 6 -2.0315 -3.2799 0.2519
13 6 -1.0179 -4.9887 1.7358
14 1 -1.8480 -4.8219 2.4063
15 6 -0.2128 -6.0963 1.8976
16 7 0.7308 -6.3573 1.0195
17 14 -0.4622 -7.2259 3.3642
18 1 -1.4331 -8.2919 3.0086
19 1 0.8352 -7.8433 3.7398
20 1 -0.9869 -6.4408 4.5103
21 6 3.7907 -2.0196 0.0846
22 6 4.5558 -1.9317 1.4177
23 6 3.3232 -2.5718 2.0778
24 1 -0.3634 0.4731 -0.9123
25 1 -0.3633 -1.0266 0.0464
26 1 -0.3634 0.5535 0.8659
27 1 1.8933 -0.5139 -0.8899
28 1 3.1300 1.4426 -0.0005
29 1 1.6767 1.9563 -0.8900
30 1 1.6767 1.9564 0.8899
31 1 0.4196 -2.6416 3.1205
32 1 0.4386 -1.2048 2.0700
33 1 -1.0858 -2.0782 2.3559
34 1 -2.7432 -3.9905 -0.1682
35 1 -2.4589 -2.8218 1.1439
36 1 -1.8125 -2.5066 -0.4843
37 1 0.9093 -5.7326 0.2993
38 1 3.9474 -2.9579 -0.4475
39 1 3.9191 -1.1442 -0.5520
40 1 4.7445 -0.9092 1.7447
41 1 5.4463 -2.5591 1.4549
42 1 3.0744 -2.1416 3.0479
43 1 3.3504 -3.6614 2.0924
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001339162416.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:29
Heat of formation + Delta-G solvation = -80.444687 kcal
Electronic energy + Delta-G solvation = -23244.255461 eV
Core-core repulsion = 20096.751960 eV
Total energy + Delta-G solvation = -3147.503502 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.97552 -39.34035 -37.75993 -36.82841 -34.62126 -33.19291 -31.79042 -28.30334
-27.66430 -26.91627 -26.83035 -26.62555 -23.30442 -22.40338 -21.09280 -20.25808
-18.78141 -18.43198 -17.27382 -17.11832 -16.46570 -15.85079 -15.71158 -15.63115
-15.38698 -15.10261 -14.57850 -14.52648 -13.82548 -13.80289 -13.55378 -13.40683
-13.20726 -13.02745 -12.90467 -12.74036 -12.66953 -12.59794 -12.33255 -12.23864
-11.98871 -11.92330 -11.76340 -11.73801 -11.53316 -11.09311 -10.94338 -10.55005
-10.02286 -9.17271 -8.61441 -6.42370 1.49089 1.56339 1.67809 1.74965
2.33563 2.41859 2.54720 3.28372 3.41339 3.58161 3.67379 3.75998
3.98487 4.11431 4.17736 4.24673 4.40795 4.53548 4.60674 4.62112
4.67716 4.70352 4.71962 4.80769 4.84575 4.87049 4.89837 4.93521
4.97743 5.05096 5.08529 5.17877 5.25197 5.28929 5.33900 5.37028
5.81789 6.01160 6.14019 6.17333 6.55640 6.86871 7.42861 7.46697
8.75917
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.021596 B = 0.007586 C = 0.006481
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.207527 B = 3689.956159 C = 4319.015095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.068 3.932
3 C -0.141 4.141
4 O -0.338 6.338
5 C 0.076 3.924
6 C 0.484 3.516
7 O -0.600 6.600
8 N -0.577 5.577
9 C 0.076 3.924
10 C 0.222 3.778
11 H 0.017 0.983
12 C -0.127 4.127
13 C -0.608 4.608
14 H 0.056 0.944
15 C -0.021 4.021
16 N -0.931 5.931
17 Si 1.114 2.886
18 H -0.274 1.274
19 H -0.289 1.289
20 H -0.265 1.265
21 C -0.145 4.145
22 C -0.108 4.108
23 C -0.119 4.119
24 H 0.076 0.924
25 H 0.044 0.956
26 H 0.077 0.923
27 H 0.046 0.954
28 H 0.066 0.934
29 H 0.083 0.917
30 H 0.072 0.928
31 H 0.032 0.968
32 H 0.108 0.892
33 H 0.066 0.934
34 H 0.052 0.948
35 H 0.060 0.940
36 H 0.041 0.959
37 H 0.270 0.730
38 H 0.072 0.928
39 H 0.089 0.911
40 H 0.111 0.889
41 H 0.085 0.915
42 H 0.095 0.905
43 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.581 15.953 2.570 16.551
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.011 3.989
3 C -0.198 4.198
4 O -0.257 6.257
5 C 0.033 3.967
6 C 0.271 3.729
7 O -0.483 6.483
8 N -0.307 5.307
9 C -0.066 4.066
10 C 0.122 3.878
11 H 0.035 0.965
12 C -0.185 4.185
13 C -0.647 4.647
14 H 0.074 0.926
15 C -0.223 4.223
16 N -0.568 5.568
17 Si 0.936 3.064
18 H -0.199 1.199
19 H -0.215 1.215
20 H -0.189 1.189
21 C -0.183 4.183
22 C -0.145 4.145
23 C -0.157 4.157
24 H 0.095 0.905
25 H 0.063 0.937
26 H 0.096 0.904
27 H 0.064 0.936
28 H 0.085 0.915
29 H 0.102 0.898
30 H 0.091 0.909
31 H 0.051 0.949
32 H 0.126 0.874
33 H 0.084 0.916
34 H 0.071 0.929
35 H 0.079 0.921
36 H 0.060 0.940
37 H 0.082 0.918
38 H 0.091 0.909
39 H 0.107 0.893
40 H 0.129 0.871
41 H 0.104 0.896
42 H 0.114 0.886
43 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 4.132 14.328 2.920 15.195
hybrid contribution -0.799 0.588 -1.280 1.619
sum 3.333 14.916 1.641 15.372
Atomic orbital electron populations
1.22455 0.95316 1.02537 1.03412 1.22323 0.94393 0.94739 0.87427
1.21901 1.01909 0.92348 1.03608 1.87849 1.80605 1.24469 1.32826
1.22853 0.90618 0.83300 0.99960 1.21548 0.84081 0.83876 0.83371
1.90578 1.80295 1.49582 1.27844 1.48918 1.16034 1.36649 1.29069
1.22054 1.01819 0.95344 0.87403 1.18881 0.86161 0.87577 0.95170
0.96453 1.21850 0.97289 0.99134 1.00223 1.22421 1.15798 1.09780
1.16709 0.92601 1.27309 0.92828 0.99653 1.02533 1.70754 1.32757
1.38559 1.14727 0.83006 0.76279 0.74502 0.72654 1.19948 1.21520
1.18905 1.23352 0.93856 1.02984 0.98083 1.22768 0.95998 1.02515
0.93235 1.22910 0.95660 0.99542 0.97572 0.90509 0.93654 0.90442
0.93554 0.91529 0.89814 0.90943 0.94942 0.87432 0.91551 0.92887
0.92080 0.94047 0.91800 0.90893 0.89262 0.87085 0.89605 0.88630
0.91570
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.75 8.21 71.98 0.59 -4.16 16
2 C 0.07 1.81 2.61 30.59 0.08 1.89 16
3 C -0.14 -2.56 9.56 71.98 0.69 -1.87 16
4 O -0.34 -10.11 7.33 -148.98 -1.09 -11.20 16
5 C 0.08 2.70 0.31 -11.01 0.00 2.69 16
6 C 0.48 22.50 5.64 87.66 0.49 23.00 16
7 O -0.60 -33.29 14.21 -3.01 -0.04 -33.33 16
8 N -0.58 -26.48 1.77 -826.78 -1.47 -27.94 16
9 C 0.08 2.87 8.27 127.77 1.06 3.93 16
10 C 0.22 11.56 2.39 44.24 0.11 11.67 16
11 H 0.02 1.08 5.46 -2.39 -0.01 1.06 16
12 C -0.13 -5.39 8.89 71.98 0.64 -4.75 16
13 C -0.61 -33.68 8.10 25.60 0.21 -33.47 16
14 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16
15 C -0.02 -1.24 5.45 84.66 0.46 -0.78 16
16 N -0.93 -59.58 13.63 21.45 0.29 -59.29 16
17 Si 1.11 50.53 29.91 68.60 2.05 52.58 16
18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16
21 C -0.14 -4.59 6.74 31.18 0.21 -4.38 16
22 C -0.11 -2.74 8.02 31.18 0.25 -2.49 16
23 C -0.12 -3.92 7.44 31.12 0.23 -3.69 16
24 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16
25 H 0.04 1.51 4.13 -2.39 -0.01 1.50 16
26 H 0.08 1.78 8.07 -2.38 -0.02 1.76 16
27 H 0.05 1.41 6.76 -2.39 -0.02 1.39 16
28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
32 H 0.11 3.52 3.66 -2.39 -0.01 3.52 16
33 H 0.07 2.37 6.54 -2.39 -0.02 2.36 16
34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16
35 H 0.06 2.35 6.88 -2.38 -0.02 2.34 16
36 H 0.04 1.62 7.21 -2.39 -0.02 1.61 16
37 H 0.27 18.10 5.48 -92.71 -0.51 17.59 16
38 H 0.07 2.75 7.46 -2.39 -0.02 2.73 16
39 H 0.09 2.44 7.34 -2.39 -0.02 2.42 16
40 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16
41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16
42 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16
43 H 0.07 2.61 8.09 -2.38 -0.02 2.59 16
Total: -1.00 -71.94 327.99 6.00 -65.94
By element:
Atomic # 1 Polarization: 24.43 SS G_CDS: 1.24 Total: 25.68 kcal
Atomic # 6 Polarization: -17.43 SS G_CDS: 5.01 Total: -12.42 kcal
Atomic # 7 Polarization: -86.06 SS G_CDS: -1.17 Total: -87.24 kcal
Atomic # 8 Polarization: -43.40 SS G_CDS: -1.13 Total: -44.53 kcal
Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal
Total: -71.94 6.00 -65.94 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001339162416.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.508 kcal
(2) G-P(sol) polarization free energy of solvation -71.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.446 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.445 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds