Wall clock time and date at job start Mon Mar 30 2020 00:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46875 * 2 1 4 4 C 1.50706 * 109.47122 * 240.00126 * 2 1 3 5 5 H 1.07998 * 119.99734 * 245.07090 * 4 2 1 6 6 C 1.37877 * 120.00018 * 64.79118 * 4 2 1 7 7 N 1.31513 * 120.00076 * 356.87163 * 6 4 2 8 8 Si 1.86797 * 119.99731 * 176.86689 * 6 4 2 9 9 H 1.48501 * 109.47134 * 94.99763 * 8 6 4 10 10 H 1.48501 * 109.46807 * 214.99556 * 8 6 4 11 11 H 1.48500 * 109.47359 * 334.99123 * 8 6 4 12 12 C 1.50696 * 109.47385 * 120.00039 * 2 1 3 13 13 O 1.20818 * 120.00298 * 120.00186 * 12 2 1 14 14 O 1.34237 * 119.99781 * 300.00091 * 12 2 1 15 15 C 1.45198 * 116.99870 * 179.97438 * 14 12 2 16 16 C 1.52994 * 109.47106 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47594 * 184.51084 * 16 15 14 18 18 H 1.08993 * 109.45816 * 56.35966 * 17 16 15 19 19 C 1.53047 * 109.45983 * 296.39753 * 17 16 15 20 20 C 1.53110 * 109.27683 * 180.80099 * 19 17 16 21 21 C 1.53120 * 109.15984 * 57.65591 * 20 19 17 22 22 C 1.53037 * 109.27938 * 302.34449 * 21 20 19 23 23 N 1.46840 * 109.46351 * 176.34571 * 17 16 15 24 24 C 1.46898 * 111.00094 * 305.85023 * 23 17 16 25 25 H 1.08998 * 109.47375 * 294.51596 * 1 2 3 26 26 H 1.09003 * 109.47255 * 54.52176 * 1 2 3 27 27 H 1.08999 * 109.47114 * 174.52261 * 1 2 3 28 28 H 0.96995 * 120.00099 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47543 * 300.00203 * 15 14 12 30 30 H 1.09001 * 109.47088 * 60.00527 * 15 14 12 31 31 H 1.09001 * 109.47724 * 304.51102 * 16 15 14 32 32 H 1.09011 * 109.46880 * 64.51117 * 16 15 14 33 33 H 1.08997 * 109.50008 * 300.74309 * 19 17 16 34 34 H 1.08998 * 109.49684 * 60.86082 * 19 17 16 35 35 H 1.09005 * 109.52551 * 297.74942 * 20 19 17 36 36 H 1.08996 * 109.57357 * 177.59302 * 20 19 17 37 37 H 1.09007 * 109.50450 * 182.40616 * 21 20 19 38 38 H 1.09000 * 109.50506 * 62.28811 * 21 20 19 39 39 H 1.09007 * 109.45962 * 299.16265 * 22 21 20 40 40 H 1.09002 * 109.45185 * 179.19654 * 22 21 20 41 41 H 1.09000 * 109.46648 * 66.88618 * 24 23 17 42 42 H 1.08999 * 109.47420 * 186.87730 * 24 23 17 43 43 H 1.08996 * 109.47723 * 306.88361 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5840 -1.6338 -1.1335 6 6 1.7827 -0.1845 -2.4804 7 7 1.0539 0.9034 -2.6024 8 14 2.4796 -1.0173 -4.0002 9 1 1.4618 -1.9349 -4.5725 10 1 2.8398 0.0125 -5.0076 11 1 3.6912 -1.7915 -3.6289 12 6 2.0324 -0.7104 1.2304 13 8 2.7270 -1.6927 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5896 16 6 1.7559 -0.3190 4.8833 17 6 2.3929 -1.0244 6.0823 18 1 3.4778 -1.0096 5.9780 19 6 1.9061 -2.4743 6.1387 20 6 2.5303 -3.1703 7.3511 21 6 2.1568 -2.3997 8.6205 22 6 2.6363 -0.9521 8.4922 23 7 2.0106 -0.3300 7.3184 24 6 2.3393 1.0997 7.2423 25 1 -0.3634 0.4264 0.9350 26 1 -0.3634 0.5965 -0.8369 27 1 -0.3633 -1.0230 -0.0981 28 1 0.8780 1.2732 -3.4817 29 1 1.8627 -2.0131 3.5566 30 1 3.3163 -0.9859 3.5569 31 1 2.0518 0.7301 4.8798 32 1 0.6704 -0.3901 4.9546 33 1 0.8200 -2.4901 6.2291 34 1 2.2037 -2.9936 5.2277 35 1 3.6148 -3.1890 7.2421 36 1 2.1536 -4.1908 7.4204 37 1 2.6336 -2.8659 9.4828 38 1 1.0747 -2.4145 8.7500 39 1 3.7202 -0.9374 8.3766 40 1 2.3592 -0.3971 9.3885 41 1 1.7136 1.5767 6.4880 42 1 2.1597 1.5659 8.2110 43 1 3.3885 1.2175 6.9714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346787465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:48 Heat of formation + Delta-G solvation = -107.320749 kcal Electronic energy + Delta-G solvation = -20996.391530 eV Core-core repulsion = 17847.722595 eV Total energy + Delta-G solvation = -3148.668935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80513 -39.24049 -35.87757 -33.86466 -33.82548 -33.25840 -30.64285 -28.82926 -26.79781 -25.17589 -24.48846 -23.17442 -22.44172 -20.93073 -19.93957 -19.63248 -16.78623 -16.16782 -15.94494 -15.85868 -15.66999 -15.10730 -14.72306 -14.46588 -14.26559 -14.07650 -13.42259 -13.07960 -12.80084 -12.62550 -12.40620 -12.28589 -11.89235 -11.73330 -11.55180 -11.26550 -11.07209 -11.00545 -10.90891 -10.81811 -10.67598 -10.57256 -10.38210 -10.29495 -10.03963 -9.87771 -9.07131 -9.01705 -8.52420 -8.45085 -6.10199 -4.14177 3.30106 3.33249 3.35912 3.37517 3.46152 3.82577 4.42409 4.53968 4.62463 4.67728 4.84035 5.07756 5.15119 5.17784 5.21383 5.24496 5.30234 5.34357 5.40310 5.53342 5.54169 5.59280 5.71353 5.73279 5.79690 5.92337 5.93728 6.03819 6.09891 6.22341 6.30790 6.69002 6.86218 6.87379 6.89622 6.91121 7.27294 7.45586 7.73929 7.93718 8.14558 8.88398 8.96448 9.51061 10.98559 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040315 B = 0.003333 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.361940 B = 8400.064973 C = 8766.757972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.057 3.943 3 H 0.066 0.934 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.464 3.536 13 O -0.519 6.519 14 O -0.366 6.366 15 C 0.065 3.935 16 C -0.115 4.115 17 C 0.090 3.910 18 H 0.043 0.957 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.117 4.117 22 C 0.056 3.944 23 N -0.537 5.537 24 C 0.020 3.980 25 H 0.024 0.976 26 H 0.088 0.912 27 H 0.034 0.966 28 H 0.263 0.737 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -2.101 21.101 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.038 3.962 3 H 0.083 0.917 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.196 1.196 12 C 0.309 3.691 13 O -0.406 6.406 14 O -0.285 6.285 15 C -0.011 4.011 16 C -0.152 4.152 17 C -0.018 4.018 18 H 0.061 0.939 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.072 4.072 23 N -0.262 5.262 24 C -0.128 4.128 25 H 0.043 0.957 26 H 0.106 0.894 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.854 -2.325 21.016 21.161 hybrid contribution 1.364 -0.397 -0.850 1.655 sum 2.219 -2.722 20.166 20.470 Atomic orbital electron populations 1.21712 0.95719 1.00727 1.00597 1.18759 0.94735 0.97067 0.85659 0.91650 1.21136 1.35496 1.09507 0.88964 0.90667 1.24940 0.94895 0.95043 0.99104 1.69915 1.37891 1.21302 1.23946 0.86382 0.79549 0.79050 0.81931 1.20606 1.21093 1.19621 1.25337 0.76561 0.83183 0.84004 1.90487 1.36424 1.26821 1.86848 1.86598 1.70476 1.55916 1.15478 1.22802 0.98467 0.95610 0.84173 1.21623 1.02343 1.00291 0.90981 1.21541 0.97333 0.94027 0.88888 0.93920 1.21741 1.01691 0.93870 0.98287 1.21591 1.00465 0.99101 0.94843 1.21597 1.02047 0.94297 0.97567 1.22098 0.96264 0.95575 0.93266 1.61896 1.59354 1.02613 1.02355 1.22446 0.99279 0.88514 1.02596 0.95697 0.89368 0.94725 0.92733 0.91685 0.92248 0.90554 0.89994 0.90697 0.90984 0.92319 0.91635 0.91697 0.91013 0.95077 0.90786 0.90518 0.91572 0.95549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.92 37.16 0.33 -2.76 16 2 C 0.06 1.46 2.68 -92.92 -0.25 1.22 16 3 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 4 C -0.51 -14.58 8.31 -34.44 -0.29 -14.87 16 5 H 0.08 2.23 6.77 -52.49 -0.36 1.87 16 6 C 0.06 1.72 5.35 -17.82 -0.10 1.62 16 7 N -0.89 -25.09 11.61 55.43 0.64 -24.44 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.46 11.14 7.25 36.00 0.26 11.40 16 13 O -0.52 -13.46 15.22 -18.74 -0.29 -13.75 16 14 O -0.37 -7.44 10.02 -39.28 -0.39 -7.83 16 15 C 0.06 1.04 5.07 37.15 0.19 1.23 16 16 C -0.11 -1.47 4.78 -26.73 -0.13 -1.59 16 17 C 0.09 1.01 1.91 -67.72 -0.13 0.88 16 18 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 19 C -0.12 -1.24 5.08 -26.65 -0.14 -1.37 16 20 C -0.12 -1.08 6.00 -26.61 -0.16 -1.24 16 21 C -0.12 -0.94 6.09 -26.65 -0.16 -1.11 16 22 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 23 N -0.54 -5.52 4.75 -234.93 -1.12 -6.64 16 24 C 0.02 0.18 8.88 60.06 0.53 0.71 16 25 H 0.02 0.52 7.98 -51.93 -0.41 0.10 16 26 H 0.09 2.24 6.48 -51.93 -0.34 1.90 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.06 1.04 6.77 -51.93 -0.35 0.69 16 30 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.08 0.96 6.27 -51.93 -0.33 0.64 16 32 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.79 6.67 -51.93 -0.35 0.44 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.27 8.14 -51.92 -0.42 -0.15 16 40 H 0.07 0.56 8.00 -51.93 -0.42 0.15 16 41 H 0.08 0.73 6.56 -51.93 -0.34 0.39 16 42 H 0.07 0.52 7.97 -51.93 -0.41 0.10 16 43 H 0.03 0.24 8.11 -51.93 -0.42 -0.18 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -30.02 337.67 -8.64 -38.66 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.51 Total: -2.27 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.05 Total: -5.42 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: -0.47 Total: -31.08 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.68 Total: -21.58 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.02 -8.64 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.665 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds