Wall clock time and date at job start Mon Mar 30 2020 00:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46875 * 2 1 4 4 C 1.50706 * 109.47122 * 240.00126 * 2 1 3 5 5 H 1.07998 * 119.99734 * 245.07090 * 4 2 1 6 6 C 1.37877 * 120.00018 * 64.79118 * 4 2 1 7 7 N 1.31513 * 120.00076 * 356.87163 * 6 4 2 8 8 Si 1.86797 * 119.99731 * 176.86689 * 6 4 2 9 9 H 1.48501 * 109.47134 * 94.99763 * 8 6 4 10 10 H 1.48501 * 109.46807 * 214.99556 * 8 6 4 11 11 H 1.48500 * 109.47359 * 334.99123 * 8 6 4 12 12 C 1.50696 * 109.47385 * 120.00039 * 2 1 3 13 13 O 1.20818 * 120.00298 * 120.00186 * 12 2 1 14 14 O 1.34237 * 119.99781 * 300.00091 * 12 2 1 15 15 C 1.45198 * 116.99870 * 179.97438 * 14 12 2 16 16 C 1.52994 * 109.47106 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47594 * 184.51084 * 16 15 14 18 18 H 1.08993 * 109.45816 * 56.35966 * 17 16 15 19 19 C 1.53047 * 109.45983 * 296.39753 * 17 16 15 20 20 C 1.53110 * 109.27683 * 180.80099 * 19 17 16 21 21 C 1.53120 * 109.15984 * 57.65591 * 20 19 17 22 22 C 1.53037 * 109.27938 * 302.34449 * 21 20 19 23 23 N 1.46840 * 109.46351 * 176.34571 * 17 16 15 24 24 C 1.46898 * 111.00094 * 305.85023 * 23 17 16 25 25 H 1.08998 * 109.47375 * 294.51596 * 1 2 3 26 26 H 1.09003 * 109.47255 * 54.52176 * 1 2 3 27 27 H 1.08999 * 109.47114 * 174.52261 * 1 2 3 28 28 H 0.96995 * 120.00099 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47543 * 300.00203 * 15 14 12 30 30 H 1.09001 * 109.47088 * 60.00527 * 15 14 12 31 31 H 1.09001 * 109.47724 * 304.51102 * 16 15 14 32 32 H 1.09011 * 109.46880 * 64.51117 * 16 15 14 33 33 H 1.08997 * 109.50008 * 300.74309 * 19 17 16 34 34 H 1.08998 * 109.49684 * 60.86082 * 19 17 16 35 35 H 1.09005 * 109.52551 * 297.74942 * 20 19 17 36 36 H 1.08996 * 109.57357 * 177.59302 * 20 19 17 37 37 H 1.09007 * 109.50450 * 182.40616 * 21 20 19 38 38 H 1.09000 * 109.50506 * 62.28811 * 21 20 19 39 39 H 1.09007 * 109.45962 * 299.16265 * 22 21 20 40 40 H 1.09002 * 109.45185 * 179.19654 * 22 21 20 41 41 H 1.09000 * 109.46648 * 66.88618 * 24 23 17 42 42 H 1.08999 * 109.47420 * 186.87730 * 24 23 17 43 43 H 1.08996 * 109.47723 * 306.88361 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5840 -1.6338 -1.1335 6 6 1.7827 -0.1845 -2.4804 7 7 1.0539 0.9034 -2.6024 8 14 2.4796 -1.0173 -4.0002 9 1 1.4618 -1.9349 -4.5725 10 1 2.8398 0.0125 -5.0076 11 1 3.6912 -1.7915 -3.6289 12 6 2.0324 -0.7104 1.2304 13 8 2.7270 -1.6927 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5896 16 6 1.7559 -0.3190 4.8833 17 6 2.3929 -1.0244 6.0823 18 1 3.4778 -1.0096 5.9780 19 6 1.9061 -2.4743 6.1387 20 6 2.5303 -3.1703 7.3511 21 6 2.1568 -2.3997 8.6205 22 6 2.6363 -0.9521 8.4922 23 7 2.0106 -0.3300 7.3184 24 6 2.3393 1.0997 7.2423 25 1 -0.3634 0.4264 0.9350 26 1 -0.3634 0.5965 -0.8369 27 1 -0.3633 -1.0230 -0.0981 28 1 0.8780 1.2732 -3.4817 29 1 1.8627 -2.0131 3.5566 30 1 3.3163 -0.9859 3.5569 31 1 2.0518 0.7301 4.8798 32 1 0.6704 -0.3901 4.9546 33 1 0.8200 -2.4901 6.2291 34 1 2.2037 -2.9936 5.2277 35 1 3.6148 -3.1890 7.2421 36 1 2.1536 -4.1908 7.4204 37 1 2.6336 -2.8659 9.4828 38 1 1.0747 -2.4145 8.7500 39 1 3.7202 -0.9374 8.3766 40 1 2.3592 -0.3971 9.3885 41 1 1.7136 1.5767 6.4880 42 1 2.1597 1.5659 8.2110 43 1 3.3885 1.2175 6.9714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346787465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:47 Heat of formation + Delta-G solvation = -124.132766 kcal Electronic energy + Delta-G solvation = -20997.120554 eV Core-core repulsion = 17847.722595 eV Total energy + Delta-G solvation = -3149.397959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38884 -40.29957 -37.59364 -35.89524 -34.65237 -34.27675 -32.67008 -29.84815 -27.57326 -27.27172 -25.78526 -24.50265 -23.57514 -21.88773 -21.55715 -20.64892 -18.66621 -18.04119 -17.61686 -17.35005 -16.64759 -16.39037 -15.89473 -15.73068 -15.28537 -15.12889 -14.76632 -14.42858 -14.24977 -13.91715 -13.54447 -13.35936 -13.18558 -12.98305 -12.82150 -12.72683 -12.61430 -12.60880 -12.47069 -12.31008 -12.06210 -12.00603 -11.63373 -11.55435 -11.31669 -11.11808 -11.07848 -10.96558 -10.55457 -9.30894 -8.22006 -6.33976 1.40937 1.41938 1.43998 1.54274 1.85577 2.43168 2.91760 3.09528 3.68586 3.75016 3.91892 3.97421 4.10998 4.14786 4.19354 4.30013 4.33212 4.50349 4.53719 4.57405 4.65157 4.68677 4.74461 4.83001 4.89512 4.93941 4.97046 5.01725 5.05426 5.06649 5.11007 5.21862 5.26834 5.38708 5.45547 5.50403 5.69473 5.84335 6.07581 6.08404 6.14797 6.72761 7.04299 7.34701 8.86009 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040315 B = 0.003333 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.361940 B = 8400.064973 C = 8766.757972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.049 3.951 3 H 0.052 0.948 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.964 3.036 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.363 6.363 15 C 0.061 3.939 16 C -0.103 4.103 17 C 0.095 3.905 18 H 0.038 0.962 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.114 4.114 22 C 0.053 3.947 23 N -0.545 5.545 24 C 0.018 3.982 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.268 0.732 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 -2.253 22.261 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.030 3.970 3 H 0.070 0.930 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.201 1.201 12 C 0.317 3.683 13 O -0.433 6.433 14 O -0.280 6.280 15 C -0.013 4.013 16 C -0.141 4.141 17 C -0.013 4.013 18 H 0.056 0.944 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.152 4.152 22 C -0.074 4.074 23 N -0.270 5.270 24 C -0.130 4.130 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.790 -2.458 22.203 22.352 hybrid contribution 1.377 -0.318 -1.114 1.800 sum 2.167 -2.776 21.089 21.381 Atomic orbital electron populations 1.21541 0.94322 1.00345 1.01230 1.18689 0.95906 0.96198 0.86179 0.92978 1.21258 1.36417 1.09474 0.90692 0.92601 1.25650 0.94927 0.95612 1.01561 1.69988 1.37999 1.21898 1.24904 0.85457 0.78737 0.78365 0.78606 1.19683 1.19845 1.20090 1.24865 0.76018 0.82520 0.84857 1.90468 1.37532 1.27868 1.87476 1.86543 1.70124 1.56036 1.15285 1.23135 0.98530 0.95858 0.83796 1.21564 1.02367 1.00343 0.89808 1.21442 0.96797 0.94320 0.88751 0.94400 1.21738 1.01582 0.93572 0.98816 1.21592 1.00312 0.99523 0.94466 1.21593 1.01988 0.93893 0.97706 1.22195 0.96163 0.96062 0.92976 1.61915 1.59742 1.03107 1.02275 1.22486 0.99038 0.88047 1.03411 0.93090 0.91026 0.95050 0.92234 0.91484 0.92310 0.90218 0.89952 0.91016 0.91946 0.92351 0.90795 0.89901 0.91322 0.95136 0.89390 0.91055 0.89960 0.95707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.92 71.98 0.64 -4.90 16 2 C 0.05 2.58 2.68 -12.29 -0.03 2.54 16 3 H 0.05 2.84 8.14 -2.39 -0.02 2.82 16 4 C -0.54 -31.19 8.31 25.60 0.21 -30.98 16 5 H 0.06 3.38 6.77 -2.91 -0.02 3.36 16 6 C 0.02 1.26 5.35 84.65 0.45 1.71 16 7 N -0.91 -51.04 11.61 21.45 0.25 -50.79 16 8 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 C 0.47 22.81 7.25 71.23 0.52 23.33 16 13 O -0.54 -28.63 15.22 21.99 0.33 -28.30 16 14 O -0.36 -14.59 10.02 -51.48 -0.52 -15.11 16 15 C 0.06 1.95 5.07 71.98 0.37 2.31 16 16 C -0.10 -2.54 4.78 30.59 0.15 -2.39 16 17 C 0.10 2.02 1.91 44.94 0.09 2.10 16 18 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 19 C -0.12 -2.38 5.08 30.65 0.16 -2.22 16 20 C -0.12 -1.94 6.00 30.67 0.18 -1.76 16 21 C -0.11 -1.58 6.09 30.65 0.19 -1.39 16 22 C 0.05 0.81 5.46 86.33 0.47 1.28 16 23 N -0.55 -10.26 4.75 -897.18 -4.26 -14.52 16 24 C 0.02 0.30 8.88 127.69 1.13 1.43 16 25 H 0.05 2.10 7.98 -2.39 -0.02 2.08 16 26 H 0.07 3.64 6.48 -2.39 -0.02 3.63 16 27 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.07 2.13 6.77 -2.39 -0.02 2.11 16 30 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 31 H 0.08 1.92 6.27 -2.39 -0.01 1.90 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.34 6.67 -2.39 -0.02 1.33 16 35 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.09 1.10 8.00 -2.39 -0.02 1.08 16 41 H 0.07 1.26 6.56 -2.39 -0.02 1.24 16 42 H 0.08 1.10 7.97 -2.39 -0.02 1.08 16 43 H 0.02 0.42 8.11 -2.39 -0.02 0.40 16 Total: -1.00 -63.11 337.67 3.32 -59.79 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.96 Total: 11.62 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.52 Total: -8.93 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -4.01 Total: -65.31 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.18 Total: -43.40 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.11 3.32 -59.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.344 kcal (2) G-P(sol) polarization free energy of solvation -63.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds