Wall clock time and date at job start Mon Mar 30 2020 00:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46606 * 2 1 4 4 C 1.50700 * 109.47177 * 120.00049 * 2 1 3 5 5 H 1.07995 * 119.99819 * 120.00611 * 4 2 1 6 6 C 1.37873 * 119.99854 * 300.00472 * 4 2 1 7 7 N 1.31518 * 119.99728 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00296 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47357 * 90.00081 * 8 6 4 10 10 H 1.48500 * 109.47082 * 210.00012 * 8 6 4 11 11 H 1.48500 * 109.47282 * 330.00156 * 8 6 4 12 12 C 1.50699 * 109.47246 * 240.00639 * 2 1 3 13 13 O 1.20829 * 119.99571 * 239.99486 * 12 2 1 14 14 O 1.34224 * 120.00229 * 59.99625 * 12 2 1 15 15 C 1.45206 * 116.99967 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47057 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.46809 * 174.85465 * 16 15 14 18 18 H 1.08997 * 109.46482 * 305.28157 * 17 16 15 19 19 C 1.53034 * 109.46321 * 65.26399 * 17 16 15 20 20 C 1.53120 * 109.27948 * 179.18346 * 19 17 16 21 21 C 1.53119 * 109.15951 * 302.34504 * 20 19 17 22 22 C 1.53034 * 109.31094 * 57.63289 * 21 20 19 23 23 N 1.46842 * 109.52360 * 300.88234 * 22 21 20 24 24 C 1.46901 * 110.99706 * 185.80083 * 23 22 21 25 25 H 1.08995 * 109.47531 * 299.99701 * 1 2 3 26 26 H 1.09000 * 109.47062 * 59.99953 * 1 2 3 27 27 H 1.09006 * 109.46684 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99879 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46980 * 59.99856 * 15 14 12 30 30 H 1.09002 * 109.46978 * 300.00233 * 15 14 12 31 31 H 1.09000 * 109.47001 * 54.85477 * 16 15 14 32 32 H 1.08994 * 109.47260 * 294.85559 * 16 15 14 33 33 H 1.08999 * 109.50453 * 59.24485 * 19 17 16 34 34 H 1.09003 * 109.50425 * 299.12342 * 19 17 16 35 35 H 1.09005 * 109.52258 * 182.44375 * 20 19 17 36 36 H 1.08995 * 109.57558 * 62.28148 * 20 19 17 37 37 H 1.09001 * 109.50544 * 177.59477 * 21 20 19 38 38 H 1.09001 * 109.50107 * 297.67199 * 21 20 19 39 39 H 1.08999 * 109.46275 * 60.85964 * 22 21 20 40 40 H 1.09004 * 109.46104 * 180.82602 * 22 21 20 41 41 H 1.08997 * 109.47323 * 289.05982 * 24 23 22 42 42 H 1.09000 * 109.47208 * 49.06070 * 24 23 22 43 43 H 1.09000 * 109.47800 * 169.06054 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1773 1.4924 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6926 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2278 -0.9854 -3.5897 16 6 1.7556 -0.3189 -4.8834 17 6 2.4060 -1.0134 -6.0816 18 1 3.4889 -1.0129 -5.9579 19 6 1.9034 -2.4562 -6.1693 20 6 2.5411 -3.1409 -7.3814 21 6 2.1994 -2.3463 -8.6449 22 6 2.6925 -0.9064 -8.4860 23 7 2.0539 -0.2954 -7.3133 24 6 2.3978 1.1289 -7.2090 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9031 -0.5281 4.4375 29 1 1.8644 -2.0126 -3.5570 30 1 3.3173 -0.9843 -3.5565 31 1 2.0401 0.7333 -4.8749 32 1 0.6715 -0.4016 -4.9600 33 1 0.8190 -2.4578 -6.2793 34 1 2.1786 -2.9932 -5.2615 35 1 2.1527 -4.1553 -7.4728 36 1 3.6231 -3.1751 -7.2541 37 1 2.6859 -2.8047 -9.5058 38 1 1.1196 -2.3468 -8.7941 39 1 3.7742 -0.9057 -8.3514 40 1 2.4374 -0.3346 -9.3783 41 1 3.4442 1.2300 -6.9210 42 1 2.2377 1.6129 -8.1724 43 1 1.7666 1.6010 -6.4560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346787467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:49 Heat of formation + Delta-G solvation = -96.529845 kcal Electronic energy + Delta-G solvation = -21059.529211 eV Core-core repulsion = 17911.328204 eV Total energy + Delta-G solvation = -3148.201006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90445 -39.34742 -36.01702 -33.98014 -33.89610 -33.31194 -31.31363 -28.94763 -26.85209 -25.18056 -24.65331 -23.31686 -22.58725 -20.98499 -19.98801 -19.64802 -17.08485 -16.45307 -16.01293 -15.88484 -15.77631 -15.26029 -14.76829 -14.53018 -14.32984 -14.24143 -13.53533 -13.22664 -12.85244 -12.80169 -12.51295 -12.39153 -12.27170 -11.93811 -11.74571 -11.65473 -11.32755 -11.13416 -10.99902 -10.93965 -10.70111 -10.61016 -10.41162 -10.33469 -9.98284 -9.67512 -9.22952 -9.15511 -8.64117 -8.56536 -6.12006 -4.14603 3.17187 3.23209 3.24333 3.31969 3.35190 3.74396 4.33437 4.49928 4.57432 4.64292 4.79625 5.03061 5.09380 5.12827 5.14762 5.17858 5.25208 5.29078 5.36183 5.48613 5.49515 5.52342 5.67022 5.68710 5.75673 5.83776 5.89015 5.91156 6.04847 6.09160 6.16529 6.19267 6.33562 6.44812 6.71580 6.82135 6.86091 7.09093 7.15969 7.48974 8.40375 8.75167 9.03383 9.44986 11.00369 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039367 B = 0.003500 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.093769 B = 7997.673322 C = 8397.314163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.025 3.975 3 H 0.063 0.937 4 C -0.518 4.518 5 H 0.094 0.906 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.294 1.294 11 H -0.264 1.264 12 C 0.473 3.527 13 O -0.503 6.503 14 O -0.368 6.368 15 C 0.065 3.935 16 C -0.115 4.115 17 C 0.090 3.910 18 H 0.044 0.956 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.117 4.117 22 C 0.056 3.944 23 N -0.538 5.538 24 C 0.019 3.981 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.267 0.733 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.026 0.974 42 H 0.066 0.934 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 1.686 -24.004 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 H 0.081 0.919 4 C -0.556 4.556 5 H 0.112 0.888 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.189 1.189 12 C 0.316 3.684 13 O -0.389 6.389 14 O -0.286 6.286 15 C -0.010 4.010 16 C -0.153 4.153 17 C -0.018 4.018 18 H 0.062 0.938 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.072 4.072 23 N -0.263 5.263 24 C -0.128 4.128 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.540 1.326 -23.860 23.947 hybrid contribution 0.440 0.731 0.308 0.907 sum -1.100 2.056 -23.552 23.667 Atomic orbital electron populations 1.22086 0.96417 1.01736 1.00021 1.19129 0.93944 0.97623 0.88767 0.91920 1.20926 1.32951 1.14541 0.87170 0.88786 1.24918 0.95656 0.96656 0.95535 1.69872 1.45055 1.40064 0.97945 0.86913 0.80767 0.83656 0.77340 1.20219 1.22105 1.18933 1.24502 0.77048 0.83198 0.83672 1.90543 1.35551 1.26131 1.86676 1.86549 1.70543 1.56083 1.15450 1.22842 0.98626 0.95657 0.83852 1.21634 1.02266 1.00422 0.90963 1.21540 0.97491 0.93914 0.88862 0.93848 1.21740 1.01568 0.93915 0.98350 1.21592 1.00528 0.99062 0.94837 1.21595 1.02055 0.94262 0.97605 1.22095 0.96149 0.95704 0.93238 1.61881 1.59286 1.02475 1.02613 1.22448 0.99216 0.88646 1.02539 0.93033 0.93649 0.92390 0.92338 0.91486 0.92003 0.90490 0.89998 0.90708 0.90963 0.91600 0.92271 0.91668 0.91028 0.95046 0.90769 0.95528 0.91552 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.61 37.16 0.32 -2.79 16 2 C 0.02 0.60 2.33 -92.92 -0.22 0.38 16 3 H 0.06 1.47 7.20 -51.93 -0.37 1.09 16 4 C -0.52 -14.98 8.96 -34.44 -0.31 -15.29 16 5 H 0.09 3.06 7.00 -52.49 -0.37 2.69 16 6 C 0.07 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -27.33 13.96 55.43 0.77 -26.55 16 8 Si 0.88 21.22 24.37 -169.99 -4.14 17.07 16 9 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.26 -5.95 6.53 56.52 0.37 -5.59 16 12 C 0.47 10.82 7.25 36.01 0.26 11.08 16 13 O -0.50 -12.88 15.21 -18.75 -0.29 -13.16 16 14 O -0.37 -6.98 10.12 -39.24 -0.40 -7.38 16 15 C 0.07 0.99 5.10 37.16 0.19 1.18 16 16 C -0.12 -1.38 4.81 -26.73 -0.13 -1.50 16 17 C 0.09 0.95 1.89 -67.72 -0.13 0.82 16 18 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 19 C -0.12 -1.18 5.11 -26.65 -0.14 -1.31 16 20 C -0.12 -1.04 6.00 -26.61 -0.16 -1.20 16 21 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 22 C 0.06 0.46 5.46 -3.84 -0.02 0.44 16 23 N -0.54 -5.26 4.74 -234.93 -1.11 -6.37 16 24 C 0.02 0.17 8.89 60.07 0.53 0.70 16 25 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 26 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.07 1.02 6.84 -51.93 -0.36 0.66 16 30 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 31 H 0.08 0.90 6.17 -51.93 -0.32 0.58 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.75 6.73 -51.93 -0.35 0.40 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.54 8.01 -51.93 -0.42 0.12 16 41 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 42 H 0.07 0.49 7.97 -51.93 -0.41 0.07 16 43 H 0.08 0.68 6.51 -51.93 -0.34 0.34 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -31.71 330.51 -7.60 -39.31 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.36 Total: -1.41 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -0.05 Total: -6.49 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: -0.34 Total: -32.93 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.68 Total: -20.54 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.71 -7.60 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.221 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds