Wall clock time and date at job start Mon Mar 30 2020 00:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46606 * 2 1 4 4 C 1.50700 * 109.47177 * 120.00049 * 2 1 3 5 5 H 1.07995 * 119.99819 * 120.00611 * 4 2 1 6 6 C 1.37873 * 119.99854 * 300.00472 * 4 2 1 7 7 N 1.31518 * 119.99728 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00296 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47357 * 90.00081 * 8 6 4 10 10 H 1.48500 * 109.47082 * 210.00012 * 8 6 4 11 11 H 1.48500 * 109.47282 * 330.00156 * 8 6 4 12 12 C 1.50699 * 109.47246 * 240.00639 * 2 1 3 13 13 O 1.20829 * 119.99571 * 239.99486 * 12 2 1 14 14 O 1.34224 * 120.00229 * 59.99625 * 12 2 1 15 15 C 1.45206 * 116.99967 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47057 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.46809 * 174.85465 * 16 15 14 18 18 H 1.08997 * 109.46482 * 305.28157 * 17 16 15 19 19 C 1.53034 * 109.46321 * 65.26399 * 17 16 15 20 20 C 1.53120 * 109.27948 * 179.18346 * 19 17 16 21 21 C 1.53119 * 109.15951 * 302.34504 * 20 19 17 22 22 C 1.53034 * 109.31094 * 57.63289 * 21 20 19 23 23 N 1.46842 * 109.52360 * 300.88234 * 22 21 20 24 24 C 1.46901 * 110.99706 * 185.80083 * 23 22 21 25 25 H 1.08995 * 109.47531 * 299.99701 * 1 2 3 26 26 H 1.09000 * 109.47062 * 59.99953 * 1 2 3 27 27 H 1.09006 * 109.46684 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99879 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46980 * 59.99856 * 15 14 12 30 30 H 1.09002 * 109.46978 * 300.00233 * 15 14 12 31 31 H 1.09000 * 109.47001 * 54.85477 * 16 15 14 32 32 H 1.08994 * 109.47260 * 294.85559 * 16 15 14 33 33 H 1.08999 * 109.50453 * 59.24485 * 19 17 16 34 34 H 1.09003 * 109.50425 * 299.12342 * 19 17 16 35 35 H 1.09005 * 109.52258 * 182.44375 * 20 19 17 36 36 H 1.08995 * 109.57558 * 62.28148 * 20 19 17 37 37 H 1.09001 * 109.50544 * 177.59477 * 21 20 19 38 38 H 1.09001 * 109.50107 * 297.67199 * 21 20 19 39 39 H 1.08999 * 109.46275 * 60.85964 * 22 21 20 40 40 H 1.09004 * 109.46104 * 180.82602 * 22 21 20 41 41 H 1.08997 * 109.47323 * 289.05982 * 24 23 22 42 42 H 1.09000 * 109.47208 * 49.06070 * 24 23 22 43 43 H 1.09000 * 109.47800 * 169.06054 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1773 1.4924 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6926 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2278 -0.9854 -3.5897 16 6 1.7556 -0.3189 -4.8834 17 6 2.4060 -1.0134 -6.0816 18 1 3.4889 -1.0129 -5.9579 19 6 1.9034 -2.4562 -6.1693 20 6 2.5411 -3.1409 -7.3814 21 6 2.1994 -2.3463 -8.6449 22 6 2.6925 -0.9064 -8.4860 23 7 2.0539 -0.2954 -7.3133 24 6 2.3978 1.1289 -7.2090 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9031 -0.5281 4.4375 29 1 1.8644 -2.0126 -3.5570 30 1 3.3173 -0.9843 -3.5565 31 1 2.0401 0.7333 -4.8749 32 1 0.6715 -0.4016 -4.9600 33 1 0.8190 -2.4578 -6.2793 34 1 2.1786 -2.9932 -5.2615 35 1 2.1527 -4.1553 -7.4728 36 1 3.6231 -3.1751 -7.2541 37 1 2.6859 -2.8047 -9.5058 38 1 1.1196 -2.3468 -8.7941 39 1 3.7742 -0.9057 -8.3514 40 1 2.4374 -0.3346 -9.3783 41 1 3.4442 1.2300 -6.9210 42 1 2.2377 1.6129 -8.1724 43 1 1.7666 1.6010 -6.4560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346787467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:49 Heat of formation + Delta-G solvation = -117.165221 kcal Electronic energy + Delta-G solvation = -21060.424028 eV Core-core repulsion = 17911.328204 eV Total energy + Delta-G solvation = -3149.095823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.46506 -40.30564 -37.65709 -35.96985 -34.66170 -34.28177 -33.36300 -29.90614 -27.58157 -27.18673 -25.97009 -24.58519 -23.59022 -21.89425 -21.51400 -20.64747 -19.01504 -18.15588 -17.68353 -17.41370 -16.72237 -16.41513 -15.92748 -15.81193 -15.32346 -15.15312 -14.91042 -14.47045 -14.37948 -14.10000 -13.90596 -13.44580 -13.38683 -13.18974 -12.92614 -12.74102 -12.61559 -12.59542 -12.47444 -12.21857 -12.01241 -11.63727 -11.57552 -11.51363 -11.32231 -11.29130 -11.08793 -11.01099 -10.77328 -9.30736 -8.32451 -6.43114 1.32576 1.38721 1.40788 1.51985 1.75914 2.31799 2.90598 3.00800 3.68800 3.72522 3.91659 3.95543 4.04831 4.11294 4.19336 4.29155 4.32834 4.36792 4.43541 4.53868 4.54919 4.56471 4.65361 4.73192 4.77345 4.83315 4.93403 4.97033 5.01180 5.05348 5.07016 5.11636 5.21805 5.26632 5.34859 5.40523 5.45535 5.50787 6.08538 6.14375 6.20665 6.68791 6.96770 7.22158 8.84448 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039367 B = 0.003500 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.093769 B = 7997.673322 C = 8397.314163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.019 3.981 3 H 0.080 0.920 4 C -0.535 4.535 5 H 0.036 0.964 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.955 3.045 9 H -0.256 1.256 10 H -0.295 1.295 11 H -0.233 1.233 12 C 0.478 3.522 13 O -0.542 6.542 14 O -0.356 6.356 15 C 0.061 3.939 16 C -0.103 4.103 17 C 0.094 3.906 18 H 0.037 0.963 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.114 4.114 22 C 0.054 3.946 23 N -0.545 5.545 24 C 0.018 3.982 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.271 0.729 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.088 0.912 41 H 0.024 0.976 42 H 0.081 0.919 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 3.770 -26.270 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.000 4.000 3 H 0.097 0.903 4 C -0.573 4.573 5 H 0.054 0.946 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.779 3.221 9 H -0.182 1.182 10 H -0.223 1.223 11 H -0.156 1.156 12 C 0.323 3.677 13 O -0.431 6.431 14 O -0.273 6.273 15 C -0.013 4.013 16 C -0.140 4.140 17 C -0.014 4.014 18 H 0.055 0.945 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.074 4.074 23 N -0.270 5.270 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.106 0.894 41 H 0.042 0.958 42 H 0.100 0.900 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.224 3.419 -26.180 26.598 hybrid contribution 1.055 -0.013 0.934 1.409 sum -2.169 3.405 -25.246 25.566 Atomic orbital electron populations 1.22006 0.93632 1.02091 1.01948 1.19079 0.96098 0.97571 0.87298 0.90281 1.21034 1.32733 1.13464 0.90025 0.94563 1.25934 0.97115 1.00592 0.94578 1.70045 1.47020 1.42554 0.98836 0.85764 0.79054 0.78982 0.78262 1.18168 1.22250 1.15570 1.24274 0.76261 0.82408 0.84790 1.90537 1.37302 1.27839 1.87417 1.86498 1.70001 1.55902 1.14934 1.23159 0.98561 0.95898 0.83710 1.21570 1.02438 1.00523 0.89486 1.21449 0.96881 0.94197 0.88899 0.94540 1.21736 1.01552 0.93697 0.98710 1.21597 1.00278 0.99496 0.94616 1.21587 1.02045 0.93891 0.97650 1.22186 0.95969 0.96172 0.93059 1.61907 1.59615 1.02985 1.02450 1.22498 0.98987 0.88126 1.03405 0.92910 0.89694 0.93024 0.92016 0.91567 0.92359 0.89857 0.89633 0.90857 0.92034 0.90878 0.92474 0.90021 0.91250 0.95241 0.89372 0.95773 0.90030 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.56 8.61 71.98 0.62 -4.94 16 2 C 0.02 0.89 2.33 -12.29 -0.03 0.86 16 3 H 0.08 3.49 7.20 -2.39 -0.02 3.48 16 4 C -0.53 -31.79 8.96 25.60 0.23 -31.56 16 5 H 0.04 2.51 7.00 -2.91 -0.02 2.49 16 6 C 0.02 0.90 5.45 84.65 0.46 1.36 16 7 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 8 Si 0.96 42.54 24.37 68.60 1.67 44.21 16 9 H -0.26 -10.61 6.87 99.48 0.68 -9.93 16 10 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.23 -9.13 6.53 99.48 0.65 -8.48 16 12 C 0.48 21.84 7.25 71.24 0.52 22.35 16 13 O -0.54 -28.68 15.21 21.96 0.33 -28.35 16 14 O -0.36 -12.99 10.12 -51.36 -0.52 -13.50 16 15 C 0.06 1.81 5.10 71.98 0.37 2.18 16 16 C -0.10 -2.28 4.81 30.59 0.15 -2.13 16 17 C 0.09 1.87 1.89 44.94 0.09 1.95 16 18 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 19 C -0.12 -2.26 5.11 30.65 0.16 -2.10 16 20 C -0.12 -1.90 6.00 30.67 0.18 -1.72 16 21 C -0.11 -1.51 6.09 30.65 0.19 -1.32 16 22 C 0.05 0.77 5.46 86.33 0.47 1.24 16 23 N -0.54 -9.53 4.74 -897.20 -4.26 -13.78 16 24 C 0.02 0.27 8.89 127.69 1.13 1.40 16 25 H 0.05 2.09 3.27 -2.39 -0.01 2.08 16 26 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 27 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 29 H 0.07 2.00 6.84 -2.39 -0.02 1.98 16 30 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 31 H 0.08 1.77 6.17 -2.39 -0.01 1.75 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.27 6.73 -2.39 -0.02 1.26 16 35 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.09 1.03 8.01 -2.39 -0.02 1.01 16 41 H 0.02 0.38 8.12 -2.39 -0.02 0.36 16 42 H 0.08 0.99 7.97 -2.39 -0.02 0.97 16 43 H 0.07 1.15 6.51 -2.39 -0.02 1.13 16 Total: -1.00 -70.97 330.51 2.95 -68.03 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.89 Total: 15.27 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.53 Total: -12.42 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -3.96 Total: -73.23 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.19 Total: -41.85 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.67 Total: 44.21 kcal Total: -70.97 2.95 -68.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.139 kcal (2) G-P(sol) polarization free energy of solvation -70.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds