Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47073 * 2 1 4 4 C 1.50704 * 109.47255 * 120.00055 * 2 1 3 5 5 H 1.07998 * 120.00413 * 120.00291 * 4 2 1 6 6 C 1.37882 * 119.99253 * 299.99848 * 4 2 1 7 7 N 1.31516 * 119.99392 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00509 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47043 * 90.00030 * 8 6 4 10 10 H 1.48501 * 109.47131 * 209.99997 * 8 6 4 11 11 H 1.48497 * 109.46842 * 329.99897 * 8 6 4 12 12 C 1.50701 * 109.47160 * 239.99596 * 2 1 3 13 13 O 1.20826 * 120.00236 * 240.00003 * 12 2 1 14 14 O 1.34229 * 119.99946 * 60.00002 * 12 2 1 15 15 C 1.45200 * 117.00086 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47152 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47269 * 176.52061 * 16 15 14 18 18 H 1.09008 * 109.45973 * 54.62071 * 17 16 15 19 19 C 1.53036 * 109.46539 * 294.65384 * 17 16 15 20 20 C 1.53118 * 109.27966 * 180.80256 * 19 17 16 21 21 C 1.53127 * 109.15927 * 57.65226 * 20 19 17 22 22 C 1.53032 * 109.27750 * 302.34699 * 21 20 19 23 23 N 1.46839 * 109.52700 * 59.18214 * 22 21 20 24 24 C 1.46901 * 111.00106 * 174.16081 * 23 22 21 25 25 H 1.09000 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47182 * 60.00278 * 1 2 3 27 27 H 1.09004 * 109.47292 * 300.00077 * 1 2 3 28 28 H 0.97000 * 119.99871 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47058 * 299.99569 * 15 14 12 30 30 H 1.08998 * 109.46890 * 60.00131 * 15 14 12 31 31 H 1.09002 * 109.46984 * 296.52417 * 16 15 14 32 32 H 1.09003 * 109.47092 * 56.51952 * 16 15 14 33 33 H 1.09004 * 109.49700 * 300.74480 * 19 17 16 34 34 H 1.08993 * 109.50395 * 60.86108 * 19 17 16 35 35 H 1.08993 * 109.52445 * 297.74618 * 20 19 17 36 36 H 1.08994 * 109.57371 * 177.58361 * 20 19 17 37 37 H 1.08998 * 109.49825 * 182.40275 * 21 20 19 38 38 H 1.09005 * 109.49957 * 62.28893 * 21 20 19 39 39 H 1.09005 * 109.46239 * 299.15925 * 22 21 20 40 40 H 1.09000 * 109.45292 * 179.18929 * 22 21 20 41 41 H 1.09006 * 109.47109 * 191.10424 * 24 23 22 42 42 H 1.08993 * 109.47108 * 311.10833 * 24 23 22 43 43 H 1.09002 * 109.47103 * 71.10887 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8595 3.5565 8 14 0.6247 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9953 3.9067 11 1 0.8470 2.1765 1.4919 12 6 2.0323 -0.7105 -1.2304 13 8 2.7270 -1.6929 -1.1195 14 8 1.7080 -0.2520 -2.4496 15 6 2.2277 -0.9859 -3.5896 16 6 1.7566 -0.3188 -4.8834 17 6 2.3742 -1.0397 -6.0832 18 1 2.1420 -2.1033 -6.0267 19 6 3.8924 -0.8479 -6.0671 20 6 4.5041 -1.5540 -7.2803 21 6 3.8773 -0.9904 -8.5587 22 6 2.3596 -1.1780 -8.5024 23 7 1.8224 -0.4837 -7.3254 24 6 0.3541 -0.5254 -7.3141 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9032 -0.5278 4.4375 29 1 3.3171 -0.9847 -3.5565 30 1 1.8642 -2.0130 -3.5567 31 1 0.6698 -0.3745 -4.9460 32 1 2.0676 0.7259 -4.8877 33 1 4.1252 0.2161 -6.1097 34 1 4.3035 -1.2746 -5.1523 35 1 4.3048 -2.6238 -7.2179 36 1 5.5806 -1.3844 -7.2971 37 1 4.2777 -1.5189 -9.4238 38 1 4.1100 0.0714 -8.6404 39 1 2.1273 -2.2409 -8.4346 40 1 1.9090 -0.7647 -9.4048 41 1 -0.0229 0.1554 -6.5508 42 1 -0.0255 -0.2230 -8.2901 43 1 0.0210 -1.5394 -7.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346787470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = -96.140110 kcal Electronic energy + Delta-G solvation = -21061.637635 eV Core-core repulsion = 17913.453529 eV Total energy + Delta-G solvation = -3148.184106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.90727 -39.34669 -36.01642 -33.98018 -33.89719 -33.31266 -31.31352 -28.94333 -26.85540 -25.18292 -24.66035 -23.31727 -22.58652 -20.98344 -20.00402 -19.61995 -17.09191 -16.44246 -16.07794 -15.83669 -15.75878 -15.27459 -14.79830 -14.49427 -14.34197 -14.22675 -13.55801 -13.21641 -12.86840 -12.76030 -12.54985 -12.38666 -12.27202 -11.94325 -11.80599 -11.55540 -11.38497 -11.12504 -10.96871 -10.93771 -10.67963 -10.64720 -10.39814 -10.35250 -9.96066 -9.67335 -9.22987 -9.15493 -8.64058 -8.56764 -6.11924 -4.14496 3.17260 3.23154 3.24464 3.32202 3.35337 3.74342 4.33542 4.49604 4.57944 4.64523 4.79682 5.03234 5.09253 5.12837 5.14311 5.17873 5.23917 5.29257 5.35962 5.48074 5.50133 5.52379 5.66900 5.68368 5.76349 5.83452 5.89040 5.91570 6.05417 6.09583 6.16215 6.19885 6.33183 6.44367 6.71378 6.81994 6.85917 7.08833 7.15996 7.49048 8.40466 8.75289 9.03462 9.45058 11.00468 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038887 B = 0.003517 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.858902 B = 7959.697533 C = 8406.940070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.025 3.975 3 H 0.064 0.936 4 C -0.518 4.518 5 H 0.094 0.906 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.884 3.116 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.264 1.264 12 C 0.473 3.527 13 O -0.503 6.503 14 O -0.368 6.368 15 C 0.064 3.936 16 C -0.115 4.115 17 C 0.090 3.910 18 H 0.043 0.957 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.117 4.117 22 C 0.056 3.944 23 N -0.537 5.537 24 C 0.020 3.980 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.267 0.733 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 1.716 -24.005 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 H 0.081 0.919 4 C -0.556 4.556 5 H 0.112 0.888 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.189 1.189 12 C 0.316 3.684 13 O -0.389 6.389 14 O -0.286 6.286 15 C -0.011 4.011 16 C -0.153 4.153 17 C -0.018 4.018 18 H 0.061 0.939 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.072 4.072 23 N -0.262 5.262 24 C -0.128 4.128 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.850 1.874 -23.829 23.917 hybrid contribution -0.803 -0.272 0.247 0.883 sum -1.653 1.602 -23.581 23.694 Atomic orbital electron populations 1.22086 0.96463 1.01690 1.00020 1.19130 0.93909 0.97665 0.88768 0.91859 1.20929 1.32956 1.14535 0.87167 0.88787 1.24921 0.95660 0.96655 0.95536 1.69871 1.45063 1.40057 0.97945 0.86912 0.80738 0.83657 0.77367 1.20256 1.22091 1.18904 1.24503 0.77054 0.83186 0.83671 1.90542 1.35557 1.26136 1.86675 1.86550 1.70555 1.56051 1.15439 1.22855 0.99036 0.95300 0.83869 1.21633 1.01438 1.01225 0.90985 1.21526 0.95065 0.96382 0.88834 0.93870 1.21748 0.93574 1.01977 0.98310 1.21592 0.99986 0.99695 0.94740 1.21598 0.94304 1.02012 0.97608 1.22097 0.95731 0.96217 0.93149 1.61896 1.06723 1.55683 1.01916 1.22448 0.87360 1.00357 1.02677 0.92437 0.93671 0.93020 0.92339 0.91433 0.92010 0.90631 0.89878 0.90683 0.90926 0.92286 0.91585 0.91663 0.91011 0.95045 0.90778 0.90580 0.91550 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.60 37.16 0.32 -2.78 16 2 C 0.02 0.60 2.33 -92.92 -0.22 0.38 16 3 H 0.06 1.48 7.20 -51.93 -0.37 1.11 16 4 C -0.52 -14.98 8.96 -34.44 -0.31 -15.29 16 5 H 0.09 3.06 7.00 -52.49 -0.37 2.69 16 6 C 0.07 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -27.33 13.96 55.43 0.77 -26.55 16 8 Si 0.88 21.22 24.37 -169.99 -4.14 17.08 16 9 H -0.28 -6.39 6.87 56.52 0.39 -6.00 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.26 -5.95 6.53 56.52 0.37 -5.58 16 12 C 0.47 10.82 7.25 36.01 0.26 11.08 16 13 O -0.50 -12.88 15.21 -18.75 -0.29 -13.17 16 14 O -0.37 -6.97 10.12 -39.26 -0.40 -7.37 16 15 C 0.06 0.98 5.31 37.16 0.20 1.18 16 16 C -0.12 -1.38 4.81 -26.73 -0.13 -1.51 16 17 C 0.09 0.95 1.89 -67.72 -0.13 0.82 16 18 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 19 C -0.12 -1.19 5.12 -26.65 -0.14 -1.33 16 20 C -0.12 -1.04 6.00 -26.60 -0.16 -1.20 16 21 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 22 C 0.06 0.46 5.46 -3.84 -0.02 0.44 16 23 N -0.54 -5.25 4.75 -234.93 -1.12 -6.37 16 24 C 0.02 0.17 8.88 60.07 0.53 0.70 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 27 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.07 1.02 6.43 -51.93 -0.33 0.69 16 30 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 31 H 0.08 0.87 6.17 -51.93 -0.32 0.55 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.77 6.55 -51.93 -0.34 0.43 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.54 8.00 -51.93 -0.42 0.12 16 41 H 0.08 0.67 6.52 -51.93 -0.34 0.33 16 42 H 0.07 0.49 7.97 -51.93 -0.41 0.07 16 43 H 0.03 0.23 8.11 -51.93 -0.42 -0.19 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -31.72 330.12 -7.56 -39.28 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.32 Total: -1.35 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.05 Total: -6.52 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: -0.34 Total: -32.92 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.68 Total: -20.54 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.72 -7.56 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.861 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds