Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47073 * 2 1 4 4 C 1.50704 * 109.47255 * 120.00055 * 2 1 3 5 5 H 1.07998 * 120.00413 * 120.00291 * 4 2 1 6 6 C 1.37882 * 119.99253 * 299.99848 * 4 2 1 7 7 N 1.31516 * 119.99392 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00509 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47043 * 90.00030 * 8 6 4 10 10 H 1.48501 * 109.47131 * 209.99997 * 8 6 4 11 11 H 1.48497 * 109.46842 * 329.99897 * 8 6 4 12 12 C 1.50701 * 109.47160 * 239.99596 * 2 1 3 13 13 O 1.20826 * 120.00236 * 240.00003 * 12 2 1 14 14 O 1.34229 * 119.99946 * 60.00002 * 12 2 1 15 15 C 1.45200 * 117.00086 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47152 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47269 * 176.52061 * 16 15 14 18 18 H 1.09008 * 109.45973 * 54.62071 * 17 16 15 19 19 C 1.53036 * 109.46539 * 294.65384 * 17 16 15 20 20 C 1.53118 * 109.27966 * 180.80256 * 19 17 16 21 21 C 1.53127 * 109.15927 * 57.65226 * 20 19 17 22 22 C 1.53032 * 109.27750 * 302.34699 * 21 20 19 23 23 N 1.46839 * 109.52700 * 59.18214 * 22 21 20 24 24 C 1.46901 * 111.00106 * 174.16081 * 23 22 21 25 25 H 1.09000 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47182 * 60.00278 * 1 2 3 27 27 H 1.09004 * 109.47292 * 300.00077 * 1 2 3 28 28 H 0.97000 * 119.99871 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47058 * 299.99569 * 15 14 12 30 30 H 1.08998 * 109.46890 * 60.00131 * 15 14 12 31 31 H 1.09002 * 109.46984 * 296.52417 * 16 15 14 32 32 H 1.09003 * 109.47092 * 56.51952 * 16 15 14 33 33 H 1.09004 * 109.49700 * 300.74480 * 19 17 16 34 34 H 1.08993 * 109.50395 * 60.86108 * 19 17 16 35 35 H 1.08993 * 109.52445 * 297.74618 * 20 19 17 36 36 H 1.08994 * 109.57371 * 177.58361 * 20 19 17 37 37 H 1.08998 * 109.49825 * 182.40275 * 21 20 19 38 38 H 1.09005 * 109.49957 * 62.28893 * 21 20 19 39 39 H 1.09005 * 109.46239 * 299.15925 * 22 21 20 40 40 H 1.09000 * 109.45292 * 179.18929 * 22 21 20 41 41 H 1.09006 * 109.47109 * 191.10424 * 24 23 22 42 42 H 1.08993 * 109.47108 * 311.10833 * 24 23 22 43 43 H 1.09002 * 109.47103 * 71.10887 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8595 3.5565 8 14 0.6247 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9953 3.9067 11 1 0.8470 2.1765 1.4919 12 6 2.0323 -0.7105 -1.2304 13 8 2.7270 -1.6929 -1.1195 14 8 1.7080 -0.2520 -2.4496 15 6 2.2277 -0.9859 -3.5896 16 6 1.7566 -0.3188 -4.8834 17 6 2.3742 -1.0397 -6.0832 18 1 2.1420 -2.1033 -6.0267 19 6 3.8924 -0.8479 -6.0671 20 6 4.5041 -1.5540 -7.2803 21 6 3.8773 -0.9904 -8.5587 22 6 2.3596 -1.1780 -8.5024 23 7 1.8224 -0.4837 -7.3254 24 6 0.3541 -0.5254 -7.3141 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9032 -0.5278 4.4375 29 1 3.3171 -0.9847 -3.5565 30 1 1.8642 -2.0130 -3.5567 31 1 0.6698 -0.3745 -4.9460 32 1 2.0676 0.7259 -4.8877 33 1 4.1252 0.2161 -6.1097 34 1 4.3035 -1.2746 -5.1523 35 1 4.3048 -2.6238 -7.2179 36 1 5.5806 -1.3844 -7.2971 37 1 4.2777 -1.5189 -9.4238 38 1 4.1100 0.0714 -8.6404 39 1 2.1273 -2.2409 -8.4346 40 1 1.9090 -0.7647 -9.4048 41 1 -0.0229 0.1554 -6.5508 42 1 -0.0255 -0.2230 -8.2901 43 1 0.0210 -1.5394 -7.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346787470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = -116.801695 kcal Electronic energy + Delta-G solvation = -21062.533589 eV Core-core repulsion = 17913.453529 eV Total energy + Delta-G solvation = -3149.080060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46522 -40.30792 -37.65600 -35.96972 -34.66255 -34.28470 -33.36287 -29.90295 -27.58026 -27.18865 -25.97531 -24.59071 -23.58803 -21.89373 -21.52037 -20.62970 -19.01770 -18.14997 -17.71593 -17.38862 -16.72079 -16.41798 -15.94511 -15.82487 -15.26871 -15.17033 -14.89444 -14.60228 -14.24449 -14.11223 -13.91268 -13.50844 -13.33382 -13.21058 -12.95413 -12.66176 -12.61364 -12.58348 -12.54489 -12.21661 -11.99416 -11.64302 -11.57375 -11.50330 -11.34119 -11.29431 -11.05765 -11.01738 -10.77359 -9.30438 -8.32397 -6.43018 1.32571 1.38770 1.40973 1.52125 1.76035 2.31879 2.90702 3.00861 3.68179 3.73353 3.91375 3.94868 4.04569 4.11447 4.19465 4.29422 4.32892 4.36709 4.42919 4.53842 4.54653 4.56412 4.65718 4.73405 4.76621 4.83283 4.94119 4.95652 5.01182 5.05657 5.07093 5.11741 5.21769 5.26786 5.34434 5.40546 5.45430 5.51086 6.08748 6.14573 6.20721 6.68861 6.96884 7.22216 8.84516 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038887 B = 0.003517 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.858902 B = 7959.697533 C = 8406.940070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.019 3.981 3 H 0.080 0.920 4 C -0.535 4.535 5 H 0.036 0.964 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.955 3.045 9 H -0.256 1.256 10 H -0.295 1.295 11 H -0.232 1.232 12 C 0.478 3.522 13 O -0.542 6.542 14 O -0.356 6.356 15 C 0.060 3.940 16 C -0.102 4.102 17 C 0.095 3.905 18 H 0.038 0.962 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.114 4.114 22 C 0.054 3.946 23 N -0.545 5.545 24 C 0.018 3.982 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.271 0.729 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 3.773 -26.279 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.001 4.001 3 H 0.097 0.903 4 C -0.573 4.573 5 H 0.054 0.946 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.779 3.221 9 H -0.182 1.182 10 H -0.222 1.222 11 H -0.156 1.156 12 C 0.323 3.677 13 O -0.431 6.431 14 O -0.273 6.273 15 C -0.014 4.014 16 C -0.140 4.140 17 C -0.014 4.014 18 H 0.056 0.944 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.074 4.074 23 N -0.270 5.270 24 C -0.130 4.130 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.558 3.938 -26.156 26.574 hybrid contribution -0.186 -1.011 0.876 1.351 sum -2.744 2.927 -25.280 25.597 Atomic orbital electron populations 1.22005 0.93655 1.02055 1.01956 1.19081 0.96083 0.97596 0.87303 0.90252 1.21036 1.32739 1.13458 0.90021 0.94562 1.25936 0.97121 1.00585 0.94579 1.70043 1.47026 1.42545 0.98837 0.85763 0.79030 0.78988 0.78282 1.18188 1.22236 1.15563 1.24274 0.76267 0.82396 0.84788 1.90536 1.37304 1.27846 1.87416 1.86498 1.70019 1.55868 1.14926 1.23175 0.99126 0.95412 0.83726 1.21570 1.01967 1.00957 0.89519 1.21432 0.95240 0.95846 0.88886 0.94418 1.21743 0.93454 1.01893 0.98667 1.21595 1.00405 0.99447 0.94520 1.21591 0.93980 1.01966 0.97652 1.22186 0.96087 0.96125 0.92981 1.61916 1.07437 1.55859 1.01780 1.22499 0.86681 1.00275 1.03555 0.93057 0.89691 0.92904 0.92015 0.91595 0.92256 0.89769 0.89766 0.90974 0.92056 0.92412 0.90926 0.89995 0.91301 0.95165 0.89381 0.90776 0.90048 0.95685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 8.60 71.98 0.62 -4.93 16 2 C 0.02 0.88 2.33 -12.29 -0.03 0.85 16 3 H 0.08 3.51 7.20 -2.39 -0.02 3.50 16 4 C -0.53 -31.79 8.96 25.60 0.23 -31.56 16 5 H 0.04 2.51 7.00 -2.91 -0.02 2.49 16 6 C 0.02 0.90 5.45 84.66 0.46 1.36 16 7 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 8 Si 0.96 42.55 24.37 68.60 1.67 44.22 16 9 H -0.26 -10.62 6.87 99.48 0.68 -9.93 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.23 -9.14 6.53 99.48 0.65 -8.49 16 12 C 0.48 21.85 7.25 71.24 0.52 22.36 16 13 O -0.54 -28.69 15.21 21.96 0.33 -28.36 16 14 O -0.36 -12.99 10.12 -51.41 -0.52 -13.51 16 15 C 0.06 1.78 5.31 71.98 0.38 2.16 16 16 C -0.10 -2.28 4.81 30.59 0.15 -2.13 16 17 C 0.09 1.87 1.89 44.93 0.08 1.95 16 18 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 19 C -0.12 -2.31 5.12 30.65 0.16 -2.15 16 20 C -0.12 -1.92 6.00 30.68 0.18 -1.73 16 21 C -0.11 -1.52 6.09 30.65 0.19 -1.34 16 22 C 0.05 0.77 5.46 86.33 0.47 1.24 16 23 N -0.54 -9.51 4.75 -897.18 -4.26 -13.77 16 24 C 0.02 0.26 8.88 127.69 1.13 1.40 16 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 27 H 0.05 2.09 3.27 -2.39 -0.01 2.08 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.07 2.00 6.43 -2.39 -0.02 1.99 16 30 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.08 1.75 6.17 -2.39 -0.01 1.73 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.29 6.55 -2.39 -0.02 1.28 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.09 1.03 8.00 -2.39 -0.02 1.01 16 41 H 0.07 1.13 6.52 -2.38 -0.02 1.11 16 42 H 0.08 0.97 7.97 -2.39 -0.02 0.95 16 43 H 0.02 0.38 8.11 -2.39 -0.02 0.36 16 Total: -1.00 -71.00 330.12 2.96 -68.04 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.89 Total: 15.33 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 4.54 Total: -12.51 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -3.96 Total: -73.22 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.19 Total: -41.86 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.67 Total: 44.22 kcal Total: -71.00 2.96 -68.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.761 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds