Wall clock time and date at job start Mon Mar 30 2020 00:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46726 * 2 1 4 4 C 1.50693 * 109.47031 * 240.00525 * 2 1 3 5 5 H 1.07999 * 119.99570 * 239.99904 * 4 2 1 6 6 C 1.37869 * 120.00423 * 59.99783 * 4 2 1 7 7 N 1.31520 * 120.00279 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00382 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47000 * 89.99578 * 8 6 4 10 10 H 1.48496 * 109.47485 * 209.99795 * 8 6 4 11 11 H 1.48505 * 109.46876 * 330.00328 * 8 6 4 12 12 C 1.50695 * 109.46964 * 119.99862 * 2 1 3 13 13 O 1.20828 * 119.99438 * 120.00128 * 12 2 1 14 14 O 1.34224 * 120.00492 * 300.00119 * 12 2 1 15 15 C 1.45199 * 117.00360 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47587 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47443 * 174.85195 * 16 15 14 18 18 H 1.08995 * 109.46085 * 305.28456 * 17 16 15 19 19 C 1.53034 * 109.46036 * 65.26541 * 17 16 15 20 20 C 1.53115 * 109.27955 * 179.18486 * 19 17 16 21 21 C 1.53116 * 109.15896 * 302.34576 * 20 19 17 22 22 C 1.53033 * 109.31260 * 57.63325 * 21 20 19 23 23 N 1.46840 * 109.52327 * 300.88031 * 22 21 20 24 24 C 1.46903 * 110.99747 * 185.79963 * 23 22 21 25 25 H 1.09004 * 109.47364 * 59.99985 * 1 2 3 26 26 H 1.08997 * 109.47146 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47422 * 299.99834 * 1 2 3 28 28 H 0.96993 * 120.00438 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47227 * 60.00068 * 15 14 12 30 30 H 1.09000 * 109.47163 * 300.00538 * 15 14 12 31 31 H 1.09007 * 109.46668 * 54.85534 * 16 15 14 32 32 H 1.08998 * 109.47361 * 294.86271 * 16 15 14 33 33 H 1.09000 * 109.50574 * 59.23783 * 19 17 16 34 34 H 1.09005 * 109.50186 * 299.12231 * 19 17 16 35 35 H 1.09000 * 109.52306 * 182.43750 * 20 19 17 36 36 H 1.08999 * 109.57756 * 62.28149 * 20 19 17 37 37 H 1.09000 * 109.50176 * 177.59582 * 21 20 19 38 38 H 1.09001 * 109.50561 * 297.66928 * 21 20 19 39 39 H 1.09000 * 109.46272 * 60.85923 * 22 21 20 40 40 H 1.09002 * 109.45920 * 180.82256 * 22 21 20 41 41 H 1.09002 * 109.46982 * 289.05819 * 24 23 22 42 42 H 1.08995 * 109.47057 * 49.06190 * 24 23 22 43 43 H 1.09002 * 109.47268 * 169.06276 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.3449 -2.1613 -4.4124 10 1 2.4872 -0.1400 -5.1120 11 1 3.6309 -1.7564 -3.7120 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1195 14 8 1.7080 -0.2519 2.4496 15 6 2.2277 -0.9857 3.5896 16 6 1.7566 -0.3186 4.8834 17 6 2.1956 -1.1627 6.0816 18 1 1.8350 -2.1838 5.9582 19 6 3.7235 -1.1684 6.1688 20 6 4.1576 -1.9972 7.3808 21 6 3.5223 -1.4105 8.6444 22 6 2.0002 -1.3969 8.4861 23 7 1.6360 -0.5917 7.3134 24 6 0.1783 -0.4424 7.2095 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7087 1.1614 -3.4843 29 1 3.3172 -0.9846 3.5566 30 1 1.8643 -2.0129 3.5568 31 1 0.6696 -0.2371 4.8752 32 1 2.1949 0.6764 4.9597 33 1 4.0856 -0.1462 6.2783 34 1 4.1381 -1.6067 5.2609 35 1 5.2434 -1.9683 7.4719 36 1 3.8301 -3.0291 7.2539 37 1 3.7932 -2.0217 9.5053 38 1 3.8818 -0.3923 8.7934 39 1 1.6399 -2.4168 8.3518 40 1 1.5462 -0.9661 9.3785 41 1 -0.2650 -1.3958 6.9219 42 1 -0.2246 -0.1304 8.1731 43 1 -0.0572 0.3097 6.4565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346787471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:53 Heat of formation + Delta-G solvation = -106.422041 kcal Electronic energy + Delta-G solvation = -20998.403336 eV Core-core repulsion = 17849.773372 eV Total energy + Delta-G solvation = -3148.629964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80350 -39.24151 -35.88106 -33.87494 -33.85223 -33.25411 -30.60534 -28.83611 -26.80037 -25.19440 -24.47213 -23.17260 -22.44380 -20.92934 -19.95838 -19.62311 -16.78450 -16.14925 -16.04989 -15.74416 -15.65836 -15.14091 -14.73402 -14.47621 -14.28776 -14.02915 -13.45254 -13.08467 -12.83626 -12.58315 -12.38310 -12.29351 -11.89546 -11.81007 -11.46885 -11.30459 -11.05641 -11.03118 -10.90934 -10.75992 -10.67465 -10.59333 -10.35687 -10.30134 -10.04229 -9.88070 -9.08309 -9.02732 -8.52174 -8.43720 -6.09378 -4.14776 3.30603 3.33049 3.35615 3.37143 3.45555 3.82566 4.42092 4.53943 4.62442 4.67628 4.83903 5.07749 5.15127 5.17910 5.21531 5.23879 5.30540 5.34265 5.40326 5.53491 5.54053 5.59196 5.71255 5.73221 5.79573 5.92178 5.93748 6.03934 6.09912 6.22136 6.30996 6.68006 6.86420 6.88941 6.89591 6.91206 7.27155 7.45829 7.75625 7.96111 8.15996 8.87940 8.95878 9.50747 10.98081 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040564 B = 0.003354 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.102911 B = 8345.486917 C = 8848.055123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.512 4.512 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.465 3.535 13 O -0.519 6.519 14 O -0.366 6.366 15 C 0.065 3.935 16 C -0.115 4.115 17 C 0.090 3.910 18 H 0.043 0.957 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.117 4.117 22 C 0.056 3.944 23 N -0.538 5.538 24 C 0.019 3.981 25 H 0.096 0.904 26 H 0.030 0.970 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.026 0.974 42 H 0.066 0.934 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -2.295 21.042 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.550 4.550 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.406 6.406 14 O -0.284 6.284 15 C -0.010 4.010 16 C -0.153 4.153 17 C -0.018 4.018 18 H 0.061 0.939 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.072 4.072 23 N -0.262 5.262 24 C -0.128 4.128 25 H 0.114 0.886 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.251 -2.026 20.964 21.099 hybrid contribution -0.021 -1.403 -0.847 1.639 sum 1.230 -3.429 20.117 20.444 Atomic orbital electron populations 1.21730 0.95661 0.99979 1.01722 1.18751 0.94832 0.96986 0.85624 0.91819 1.21143 1.31861 1.13213 0.88831 0.90662 1.24936 0.94930 0.95010 0.99120 1.69878 1.36582 1.22820 1.23839 0.86381 0.79453 0.79215 0.81767 1.20544 1.21125 1.19670 1.25329 0.76539 0.83187 0.84010 1.90490 1.36448 1.26825 1.86855 1.86597 1.70430 1.55937 1.15470 1.22799 0.98791 0.95272 0.84182 1.21630 1.02440 1.00233 0.90967 1.21541 0.95320 0.96019 0.88904 0.93916 1.21737 0.94125 1.01410 0.98284 1.21590 1.00395 0.99135 0.94880 1.21593 0.94525 1.01819 0.97570 1.22092 0.96417 0.95396 0.93281 1.61882 1.11222 1.50542 1.02600 1.22451 0.87118 1.00734 1.02546 0.88571 0.95069 0.95775 0.92702 0.91718 0.92248 0.90485 0.90019 0.90699 0.91006 0.91641 0.92311 0.91701 0.91021 0.95086 0.90779 0.95546 0.91565 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.90 37.16 0.33 -2.86 16 2 C 0.06 1.47 2.74 -92.93 -0.25 1.22 16 3 H 0.06 1.69 8.14 -51.92 -0.42 1.27 16 4 C -0.51 -14.57 8.37 -34.45 -0.29 -14.86 16 5 H 0.08 2.23 6.76 -52.49 -0.35 1.87 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.46 11.16 7.25 36.00 0.26 11.43 16 13 O -0.52 -13.49 15.21 -18.75 -0.29 -13.77 16 14 O -0.37 -7.45 10.12 -39.24 -0.40 -7.85 16 15 C 0.06 1.04 5.10 37.16 0.19 1.23 16 16 C -0.11 -1.47 4.81 -26.73 -0.13 -1.60 16 17 C 0.09 1.01 1.89 -67.72 -0.13 0.88 16 18 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 19 C -0.12 -1.23 5.11 -26.65 -0.14 -1.37 16 20 C -0.12 -1.08 6.00 -26.61 -0.16 -1.24 16 21 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 22 C 0.06 0.49 5.46 -3.84 -0.02 0.47 16 23 N -0.54 -5.54 4.74 -234.93 -1.11 -6.65 16 24 C 0.02 0.18 8.89 60.07 0.53 0.71 16 25 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.06 1.03 6.84 -51.93 -0.36 0.68 16 30 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16 31 H 0.08 0.98 6.17 -51.93 -0.32 0.66 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.78 6.74 -51.93 -0.35 0.43 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.56 8.01 -51.93 -0.42 0.15 16 41 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 42 H 0.07 0.52 7.97 -51.93 -0.41 0.11 16 43 H 0.08 0.74 6.51 -51.93 -0.34 0.40 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -29.96 337.32 -8.66 -38.61 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -7.49 Total: -2.13 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.06 Total: -5.49 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: -0.49 Total: -31.05 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.68 Total: -21.62 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.96 -8.66 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.810 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds