Wall clock time and date at job start Mon Mar 30 2020 00:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46726 * 2 1 4 4 C 1.50693 * 109.47031 * 240.00525 * 2 1 3 5 5 H 1.07999 * 119.99570 * 239.99904 * 4 2 1 6 6 C 1.37869 * 120.00423 * 59.99783 * 4 2 1 7 7 N 1.31520 * 120.00279 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00382 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47000 * 89.99578 * 8 6 4 10 10 H 1.48496 * 109.47485 * 209.99795 * 8 6 4 11 11 H 1.48505 * 109.46876 * 330.00328 * 8 6 4 12 12 C 1.50695 * 109.46964 * 119.99862 * 2 1 3 13 13 O 1.20828 * 119.99438 * 120.00128 * 12 2 1 14 14 O 1.34224 * 120.00492 * 300.00119 * 12 2 1 15 15 C 1.45199 * 117.00360 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47587 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47443 * 174.85195 * 16 15 14 18 18 H 1.08995 * 109.46085 * 305.28456 * 17 16 15 19 19 C 1.53034 * 109.46036 * 65.26541 * 17 16 15 20 20 C 1.53115 * 109.27955 * 179.18486 * 19 17 16 21 21 C 1.53116 * 109.15896 * 302.34576 * 20 19 17 22 22 C 1.53033 * 109.31260 * 57.63325 * 21 20 19 23 23 N 1.46840 * 109.52327 * 300.88031 * 22 21 20 24 24 C 1.46903 * 110.99747 * 185.79963 * 23 22 21 25 25 H 1.09004 * 109.47364 * 59.99985 * 1 2 3 26 26 H 1.08997 * 109.47146 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47422 * 299.99834 * 1 2 3 28 28 H 0.96993 * 120.00438 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47227 * 60.00068 * 15 14 12 30 30 H 1.09000 * 109.47163 * 300.00538 * 15 14 12 31 31 H 1.09007 * 109.46668 * 54.85534 * 16 15 14 32 32 H 1.08998 * 109.47361 * 294.86271 * 16 15 14 33 33 H 1.09000 * 109.50574 * 59.23783 * 19 17 16 34 34 H 1.09005 * 109.50186 * 299.12231 * 19 17 16 35 35 H 1.09000 * 109.52306 * 182.43750 * 20 19 17 36 36 H 1.08999 * 109.57756 * 62.28149 * 20 19 17 37 37 H 1.09000 * 109.50176 * 177.59582 * 21 20 19 38 38 H 1.09001 * 109.50561 * 297.66928 * 21 20 19 39 39 H 1.09000 * 109.46272 * 60.85923 * 22 21 20 40 40 H 1.09002 * 109.45920 * 180.82256 * 22 21 20 41 41 H 1.09002 * 109.46982 * 289.05819 * 24 23 22 42 42 H 1.08995 * 109.47057 * 49.06190 * 24 23 22 43 43 H 1.09002 * 109.47268 * 169.06276 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.3449 -2.1613 -4.4124 10 1 2.4872 -0.1400 -5.1120 11 1 3.6309 -1.7564 -3.7120 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1195 14 8 1.7080 -0.2519 2.4496 15 6 2.2277 -0.9857 3.5896 16 6 1.7566 -0.3186 4.8834 17 6 2.1956 -1.1627 6.0816 18 1 1.8350 -2.1838 5.9582 19 6 3.7235 -1.1684 6.1688 20 6 4.1576 -1.9972 7.3808 21 6 3.5223 -1.4105 8.6444 22 6 2.0002 -1.3969 8.4861 23 7 1.6360 -0.5917 7.3134 24 6 0.1783 -0.4424 7.2095 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7087 1.1614 -3.4843 29 1 3.3172 -0.9846 3.5566 30 1 1.8643 -2.0129 3.5568 31 1 0.6696 -0.2371 4.8752 32 1 2.1949 0.6764 4.9597 33 1 4.0856 -0.1462 6.2783 34 1 4.1381 -1.6067 5.2609 35 1 5.2434 -1.9683 7.4719 36 1 3.8301 -3.0291 7.2539 37 1 3.7932 -2.0217 9.5053 38 1 3.8818 -0.3923 8.7934 39 1 1.6399 -2.4168 8.3518 40 1 1.5462 -0.9661 9.3785 41 1 -0.2650 -1.3958 6.9219 42 1 -0.2246 -0.1304 8.1731 43 1 -0.0572 0.3097 6.4565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346787471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:53 Heat of formation + Delta-G solvation = -123.167310 kcal Electronic energy + Delta-G solvation = -20999.129465 eV Core-core repulsion = 17849.773372 eV Total energy + Delta-G solvation = -3149.356094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39145 -40.29907 -37.59964 -35.93018 -34.65719 -34.26981 -32.63134 -29.85831 -27.57639 -27.28979 -25.77389 -24.49490 -23.58237 -21.89273 -21.56669 -20.64609 -18.65591 -18.04124 -17.65107 -17.31218 -16.65198 -16.38971 -15.94823 -15.72969 -15.20931 -15.15505 -14.72509 -14.60417 -14.12198 -13.93306 -13.59227 -13.33339 -13.19211 -12.99842 -12.84318 -12.65073 -12.61882 -12.60468 -12.48311 -12.29790 -12.06381 -12.00695 -11.63529 -11.55040 -11.33289 -11.12469 -11.07157 -10.98193 -10.53824 -9.30777 -8.20760 -6.34350 1.41086 1.42225 1.43987 1.53833 1.85400 2.43190 2.91604 3.09188 3.68430 3.74952 3.91753 3.97595 4.10201 4.14625 4.19412 4.29742 4.33181 4.50275 4.53720 4.57457 4.65008 4.68130 4.74110 4.82985 4.89307 4.93332 4.97912 5.01363 5.05281 5.06655 5.11347 5.21692 5.26768 5.38856 5.45496 5.50075 5.68656 5.87903 6.08080 6.09699 6.14821 6.72164 7.03891 7.34657 8.85801 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040564 B = 0.003354 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.102911 B = 8345.486917 C = 8848.055123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.051 0.949 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.362 6.362 15 C 0.061 3.939 16 C -0.104 4.104 17 C 0.096 3.904 18 H 0.038 0.962 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.114 4.114 22 C 0.054 3.946 23 N -0.546 5.546 24 C 0.018 3.982 25 H 0.078 0.922 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.269 0.731 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.088 0.912 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -2.480 22.189 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.069 0.931 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.201 1.201 12 C 0.318 3.682 13 O -0.434 6.434 14 O -0.280 6.280 15 C -0.013 4.013 16 C -0.141 4.141 17 C -0.013 4.013 18 H 0.056 0.944 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.152 4.152 22 C -0.074 4.074 23 N -0.271 5.271 24 C -0.130 4.130 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.106 0.894 41 H 0.043 0.957 42 H 0.101 0.899 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.114 -2.193 22.140 22.276 hybrid contribution 0.009 -1.315 -1.111 1.721 sum 1.123 -3.508 21.029 21.349 Atomic orbital electron populations 1.21564 0.94324 0.99874 1.02066 1.18684 0.95962 0.96161 0.86159 0.93091 1.21264 1.32713 1.13325 0.90570 0.92602 1.25645 0.94868 0.95634 1.01572 1.69957 1.36632 1.23362 1.24797 0.85462 0.78718 0.78449 0.78482 1.19731 1.19821 1.20056 1.24860 0.75998 0.82528 0.84861 1.90470 1.37555 1.27870 1.87481 1.86542 1.70090 1.56053 1.15281 1.23132 0.99007 0.95361 0.83806 1.21572 1.02578 1.00178 0.89794 1.21441 0.95812 0.95288 0.88760 0.94405 1.21735 0.93606 1.01523 0.98823 1.21591 1.01036 0.98767 0.94495 1.21589 0.93961 1.01924 0.97709 1.22190 0.96973 0.95231 0.92986 1.61902 1.11787 1.50865 1.02512 1.22491 0.86630 1.00519 1.03356 0.90312 0.95288 0.93209 0.92204 0.91565 0.92269 0.90125 0.90002 0.91013 0.91952 0.90793 0.92345 0.89904 0.91326 0.95149 0.89380 0.95709 0.89949 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.90 71.98 0.64 -5.12 16 2 C 0.05 2.58 2.74 -12.29 -0.03 2.55 16 3 H 0.05 2.77 8.14 -2.38 -0.02 2.75 16 4 C -0.54 -31.22 8.37 25.60 0.21 -31.01 16 5 H 0.06 3.38 6.76 -2.91 -0.02 3.36 16 6 C 0.02 1.26 5.30 84.65 0.45 1.71 16 7 N -0.91 -50.84 11.32 21.45 0.24 -50.60 16 8 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 C 0.47 22.87 7.25 71.23 0.52 23.38 16 13 O -0.54 -28.69 15.21 21.96 0.33 -28.35 16 14 O -0.36 -14.62 10.12 -51.36 -0.52 -15.14 16 15 C 0.06 1.95 5.10 71.98 0.37 2.32 16 16 C -0.10 -2.56 4.81 30.59 0.15 -2.41 16 17 C 0.10 2.02 1.89 44.94 0.09 2.11 16 18 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 19 C -0.12 -2.37 5.11 30.64 0.16 -2.22 16 20 C -0.12 -1.94 6.00 30.67 0.18 -1.76 16 21 C -0.11 -1.58 6.09 30.64 0.19 -1.39 16 22 C 0.05 0.81 5.46 86.33 0.47 1.28 16 23 N -0.55 -10.29 4.74 -897.20 -4.26 -14.54 16 24 C 0.02 0.30 8.89 127.69 1.13 1.43 16 25 H 0.08 4.05 6.07 -2.38 -0.01 4.04 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 28 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.07 2.11 6.84 -2.39 -0.02 2.09 16 30 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.08 1.94 6.17 -2.38 -0.01 1.93 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.34 6.74 -2.38 -0.02 1.32 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.09 1.10 8.01 -2.39 -0.02 1.08 16 41 H 0.02 0.42 8.12 -2.39 -0.02 0.40 16 42 H 0.08 1.11 7.97 -2.39 -0.02 1.09 16 43 H 0.07 1.26 6.51 -2.39 -0.02 1.25 16 Total: -1.00 -62.97 337.32 3.31 -59.67 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.96 Total: 11.91 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 4.52 Total: -9.11 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -4.01 Total: -65.14 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.19 Total: -43.50 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -62.97 3.31 -59.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.502 kcal (2) G-P(sol) polarization free energy of solvation -62.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds