Wall clock time and date at job start Mon Mar 30 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46841 * 2 1 4 4 C 1.50696 * 109.47040 * 239.99998 * 2 1 3 5 5 H 1.08000 * 120.00170 * 239.99863 * 4 2 1 6 6 C 1.37875 * 120.00355 * 59.99895 * 4 2 1 7 7 N 1.31519 * 119.99977 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00526 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46661 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47190 * 119.99930 * 8 6 4 11 11 H 1.48495 * 109.47159 * 240.00072 * 8 6 4 12 12 N 1.46496 * 109.47278 * 119.99824 * 2 1 3 13 13 C 1.46508 * 119.99693 * 66.32962 * 12 2 1 14 14 C 1.34773 * 120.00313 * 246.33144 * 12 2 1 15 15 O 1.21276 * 120.00329 * 184.22960 * 14 12 2 16 16 C 1.50703 * 119.99749 * 4.22815 * 14 12 2 17 17 H 1.09004 * 109.54420 * 41.52259 * 16 14 12 18 18 C 1.53175 * 109.54304 * 281.34381 * 16 14 12 19 19 C 1.53095 * 109.16244 * 183.15438 * 18 16 14 20 20 O 1.42901 * 109.41433 * 57.60664 * 19 18 16 21 21 C 1.42906 * 114.09974 * 298.83919 * 20 19 18 22 22 C 1.53000 * 109.48078 * 181.14027 * 21 20 19 23 23 C 1.52995 * 109.48276 * 301.16902 * 21 20 19 24 24 C 1.53100 * 109.40944 * 61.16075 * 21 20 19 25 25 H 1.09004 * 109.47338 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47186 * 60.00008 * 1 2 3 27 27 H 1.09008 * 109.47303 * 300.00111 * 1 2 3 28 28 H 0.96999 * 120.00433 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47321 * 91.82597 * 13 12 2 30 30 H 1.09008 * 109.46885 * 211.81975 * 13 12 2 31 31 H 1.08999 * 109.47242 * 331.81622 * 13 12 2 32 32 H 1.09003 * 109.52090 * 303.05709 * 18 16 14 33 33 H 1.08997 * 109.52412 * 63.24916 * 18 16 14 34 34 H 1.08991 * 109.47972 * 177.58950 * 19 18 16 35 35 H 1.09000 * 109.47759 * 297.61766 * 19 18 16 36 36 H 1.09003 * 109.47040 * 60.00775 * 22 21 20 37 37 H 1.08997 * 109.46751 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.47596 * 300.00062 * 22 21 20 39 39 H 1.09002 * 109.47317 * 59.99844 * 23 21 20 40 40 H 1.09002 * 109.47166 * 180.02562 * 23 21 20 41 41 H 1.08997 * 109.46988 * 299.99543 * 23 21 20 42 42 H 1.09000 * 109.51620 * 182.48169 * 24 21 20 43 43 H 1.08997 * 109.52184 * 62.29949 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1474 -2.2864 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 7 2.0183 -0.6905 1.1961 13 6 1.7823 -2.1271 1.3603 14 6 2.6847 -0.0044 2.1456 15 8 3.1556 -0.5887 3.0983 16 6 2.8448 1.4891 2.0234 17 1 1.9102 1.9288 1.6750 18 6 3.9629 1.8047 1.0252 19 6 4.1715 3.3202 0.9667 20 8 4.4801 3.8080 2.2739 21 6 3.4502 3.5834 3.2388 22 6 3.8769 4.1692 4.5863 23 6 2.1592 4.2601 2.7740 24 6 3.2128 2.0784 3.3886 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7088 1.1614 -3.4844 29 1 2.6262 -2.6830 0.9520 30 1 1.6732 -2.3587 2.4199 31 1 0.8717 -2.4085 0.8313 32 1 4.8857 1.3222 1.3474 33 1 3.6841 1.4370 0.0377 34 1 4.9949 3.5480 0.2899 35 1 3.2611 3.7987 0.6056 36 1 4.0469 5.2406 4.4793 37 1 3.0914 3.9974 5.3222 38 1 4.7964 3.6867 4.9175 39 1 1.8551 3.8423 1.8143 40 1 1.3739 4.0891 3.5104 41 1 2.3288 5.3314 2.6666 42 1 2.3975 1.9065 4.0913 43 1 4.1204 1.6015 3.7585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350016229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:22 Heat of formation + Delta-G solvation = -111.217619 kcal Electronic energy + Delta-G solvation = -22628.238489 eV Core-core repulsion = 19479.400573 eV Total energy + Delta-G solvation = -3148.837916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68012 -39.99832 -37.38138 -34.73701 -34.57583 -34.42348 -31.02294 -29.40499 -28.26333 -28.18519 -27.27121 -25.12042 -23.72429 -22.81506 -20.27299 -19.79919 -18.48578 -18.10300 -17.16228 -17.02513 -16.57152 -16.36375 -15.96747 -15.56663 -15.25301 -14.72998 -14.59046 -14.41486 -14.04415 -13.64407 -13.45772 -13.34300 -13.07356 -12.95950 -12.92952 -12.82641 -12.69891 -12.60395 -12.56128 -12.25906 -12.19867 -12.05761 -11.94403 -11.68908 -11.23696 -11.10006 -10.76807 -10.52849 -10.24500 -9.39791 -8.15255 -6.28455 1.40844 1.45895 1.54032 1.68950 2.30149 2.46676 2.83932 3.14005 3.57530 3.68561 3.80003 3.90099 4.09745 4.19503 4.31400 4.41139 4.45057 4.56695 4.63294 4.66386 4.70296 4.75039 4.83199 4.86156 4.91155 4.92701 4.95114 5.02072 5.04220 5.12527 5.14555 5.17908 5.34482 5.37177 5.45016 5.57221 5.75025 5.94857 6.20123 6.34217 6.66017 6.82938 7.28166 7.44665 8.88412 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021214 B = 0.006373 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.541878 B = 4392.688312 C = 4978.061162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.255 3.745 3 H 0.053 0.947 4 C -0.539 4.539 5 H 0.049 0.951 6 C 0.033 3.967 7 N -0.905 5.905 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.598 5.598 13 C 0.099 3.901 14 C 0.507 3.493 15 O -0.597 6.597 16 C -0.098 4.098 17 H 0.096 0.904 18 C -0.141 4.141 19 C 0.068 3.932 20 O -0.386 6.386 21 C 0.108 3.892 22 C -0.132 4.132 23 C -0.179 4.179 24 C -0.113 4.113 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.266 0.734 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 6.685 7.733 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.154 3.846 3 H 0.071 0.929 4 C -0.578 4.578 5 H 0.068 0.932 6 C -0.169 4.169 7 N -0.543 5.543 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.327 5.327 13 C -0.044 4.044 14 C 0.296 3.704 15 O -0.480 6.480 16 C -0.119 4.119 17 H 0.114 0.886 18 C -0.179 4.179 19 C -0.008 4.008 20 O -0.305 6.305 21 C 0.069 3.931 22 C -0.189 4.189 23 C -0.236 4.236 24 C -0.152 4.152 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.546 6.572 8.099 10.543 hybrid contribution -0.068 -1.071 -1.302 1.687 sum 1.478 5.501 6.797 8.868 Atomic orbital electron populations 1.22009 0.97701 0.99873 1.00608 1.19004 0.91630 0.93300 0.80675 0.92900 1.21475 1.31963 1.13142 0.91184 0.93230 1.25420 0.94924 0.95515 1.00998 1.69933 1.36649 1.23260 1.24472 0.85632 0.78164 0.78657 0.79917 1.20127 1.20534 1.20539 1.48344 1.53873 1.09587 1.20887 1.21384 1.01103 0.81065 1.00894 1.21003 0.77272 0.90681 0.81448 1.90555 1.50997 1.72056 1.34441 1.21303 1.01036 0.91106 0.98492 0.88562 1.22135 0.97458 0.98926 0.99408 1.22554 1.02433 0.91057 0.84776 1.87914 1.43039 1.80311 1.19256 1.21662 0.88367 0.92562 0.90542 1.21749 1.02422 1.01612 0.93162 1.22456 0.97250 1.01614 1.02280 1.21979 1.02447 0.95856 0.94885 0.94792 0.90488 0.95363 0.92421 0.94118 0.91899 0.90557 0.92252 0.90521 0.87331 0.91948 0.90792 0.89479 0.92359 0.92796 0.90125 0.90684 0.90453 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.23 9.05 71.98 0.65 -5.58 16 2 C 0.26 11.55 1.95 44.24 0.09 11.64 16 3 H 0.05 2.47 4.35 -2.39 -0.01 2.45 16 4 C -0.54 -26.90 8.30 25.60 0.21 -26.69 16 5 H 0.05 2.56 7.35 -2.91 -0.02 2.54 16 6 C 0.03 1.62 5.30 84.65 0.45 2.06 16 7 N -0.90 -45.98 11.32 21.45 0.24 -45.74 16 8 Si 0.95 40.51 29.54 68.60 2.03 42.53 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 12 N -0.60 -25.53 2.75 -826.79 -2.28 -27.81 16 13 C 0.10 3.85 9.34 127.77 1.19 5.04 16 14 C 0.51 21.26 6.86 87.66 0.60 21.87 16 15 O -0.60 -27.51 15.61 -3.02 -0.05 -27.55 16 16 C -0.10 -3.48 1.42 -11.42 -0.02 -3.49 16 17 H 0.10 3.37 5.55 -2.39 -0.01 3.36 16 18 C -0.14 -4.92 5.09 30.68 0.16 -4.77 16 19 C 0.07 2.00 6.52 72.01 0.47 2.47 16 20 O -0.39 -11.31 10.24 -148.98 -1.52 -12.84 16 21 C 0.11 2.78 1.11 -10.76 -0.01 2.77 16 22 C -0.13 -2.71 8.85 71.98 0.64 -2.07 16 23 C -0.18 -4.09 7.94 71.98 0.57 -3.52 16 24 C -0.11 -3.49 3.71 30.69 0.11 -3.38 16 25 H 0.03 1.43 6.94 -2.39 -0.02 1.41 16 26 H 0.08 3.66 6.07 -2.38 -0.01 3.65 16 27 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 29 H 0.04 1.60 8.05 -2.39 -0.02 1.58 16 30 H 0.06 2.33 7.54 -2.38 -0.02 2.31 16 31 H 0.08 2.83 6.78 -2.39 -0.02 2.81 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 3.04 6.39 -2.39 -0.02 3.02 16 34 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.06 1.76 6.34 -2.39 -0.02 1.75 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.39 4.98 -2.39 -0.01 1.38 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.06 2.12 7.81 -2.39 -0.02 2.10 16 Total: -1.00 -56.97 325.96 4.52 -52.45 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.98 Total: 22.62 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.11 Total: -3.66 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -2.03 Total: -73.55 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.57 Total: -40.39 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Total: -56.97 4.52 -52.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350016229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.766 kcal (2) G-P(sol) polarization free energy of solvation -56.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds