Wall clock time and date at job start Mon Mar 30 2020 00:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.46497 * 120.00293 * 60.00238 * 12 2 1 14 14 C 1.34779 * 119.99892 * 239.99608 * 12 2 1 15 15 O 1.21285 * 119.99902 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00331 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.53839 * 299.82635 * 16 14 12 18 18 C 1.53178 * 109.54285 * 59.99773 * 16 14 12 19 19 C 1.53093 * 109.16422 * 176.85051 * 18 16 14 20 20 O 1.42901 * 109.41052 * 302.39445 * 19 18 16 21 21 C 1.42902 * 114.10430 * 61.16025 * 20 19 18 22 22 C 1.53003 * 109.47980 * 58.81449 * 21 20 19 23 23 C 1.52991 * 109.48459 * 178.84543 * 21 20 19 24 24 C 1.53100 * 109.41126 * 298.84106 * 21 20 19 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47299 * 89.99680 * 13 12 2 30 30 H 1.09003 * 109.47539 * 209.99447 * 13 12 2 31 31 H 1.08994 * 109.47071 * 329.99887 * 13 12 2 32 32 H 1.08997 * 109.52483 * 296.76298 * 18 16 14 33 33 H 1.09005 * 109.51748 * 56.88471 * 18 16 14 34 34 H 1.08993 * 109.47824 * 62.37265 * 19 18 16 35 35 H 1.08998 * 109.48172 * 182.41103 * 19 18 16 36 36 H 1.09008 * 109.46291 * 60.00805 * 22 21 20 37 37 H 1.08994 * 109.47005 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47262 * 300.00714 * 22 21 20 39 39 H 1.08996 * 109.47363 * 59.99703 * 23 21 20 40 40 H 1.09003 * 109.47129 * 180.02562 * 23 21 20 41 41 H 1.09003 * 109.47047 * 299.99389 * 23 21 20 42 42 H 1.08999 * 109.51801 * 297.70000 * 24 21 20 43 43 H 1.08999 * 109.51899 * 177.50862 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2958 -0.7460 3.3137 17 1 2.4490 -1.0866 3.9096 18 6 4.1472 -1.9497 2.8984 19 6 4.7176 -2.6183 4.1520 20 8 5.4811 -1.6645 4.8933 21 6 4.7262 -0.5398 5.3487 22 6 3.5786 -1.0221 6.2384 23 6 5.6352 0.3943 6.1499 24 6 4.1561 0.2122 4.1432 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7173 1.1669 -3.4844 29 1 2.4156 -2.7377 0.9720 30 1 1.6236 -2.2851 2.5004 31 1 0.6904 -2.3001 0.9848 32 1 3.5284 -2.6633 2.3545 33 1 4.9643 -1.6147 2.2593 34 1 3.9001 -2.9889 4.7702 35 1 5.3592 -3.4499 3.8605 36 1 3.9848 -1.5584 7.0962 37 1 3.0033 -0.1642 6.5861 38 1 2.9310 -1.6872 5.6673 39 1 6.4523 0.7380 5.5158 40 1 5.0590 1.2518 6.4975 41 1 6.0415 -0.1417 7.0076 42 1 4.9739 0.5909 3.5302 43 1 3.5435 1.0446 4.4896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350016232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:24 Heat of formation + Delta-G solvation = -89.838065 kcal Electronic energy + Delta-G solvation = -22239.076906 eV Core-core repulsion = 19091.166077 eV Total energy + Delta-G solvation = -3147.910829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42311 -38.57944 -35.38968 -33.79017 -33.60512 -32.48007 -29.33860 -28.28508 -27.40843 -26.18204 -25.23760 -24.56580 -22.52676 -20.79284 -19.18634 -18.32008 -16.76835 -16.33452 -15.94667 -15.93197 -15.23690 -14.90888 -14.35574 -14.11137 -14.08342 -13.53000 -13.10274 -12.80399 -12.61984 -12.54009 -12.21672 -12.13808 -11.96480 -11.77335 -11.58907 -11.28818 -11.20058 -11.07478 -10.98630 -10.81996 -10.71723 -10.51972 -10.23997 -10.18846 -10.04470 -9.57003 -9.14775 -8.77073 -8.42591 -7.57669 -6.07414 -4.15329 3.25416 3.32860 3.35203 3.40126 3.74140 3.95337 4.39303 4.68438 4.78665 4.87885 4.91689 5.01297 5.20683 5.23595 5.36467 5.39414 5.45197 5.55130 5.62354 5.67848 5.68454 5.77785 5.84643 5.94314 5.99233 6.01738 6.08369 6.19717 6.26132 6.34220 6.46890 6.75564 6.81436 7.05361 7.28683 7.43893 7.52834 7.71787 8.01600 8.19904 8.54367 8.84047 9.07639 9.51496 10.97960 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030730 B = 0.004825 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.943494 B = 5802.157110 C = 6002.243528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.592 5.592 13 C 0.086 3.914 14 C 0.508 3.492 15 O -0.552 6.552 16 C -0.108 4.108 17 H 0.090 0.910 18 C -0.158 4.158 19 C 0.063 3.937 20 O -0.375 6.375 21 C 0.110 3.890 22 C -0.179 4.179 23 C -0.136 4.136 24 C -0.119 4.119 25 H 0.011 0.989 26 H 0.093 0.907 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.731 -6.900 15.550 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.323 5.323 13 C -0.058 4.058 14 C 0.295 3.705 15 O -0.431 6.431 16 C -0.129 4.129 17 H 0.108 0.892 18 C -0.196 4.196 19 C -0.014 4.014 20 O -0.295 6.295 21 C 0.071 3.929 22 C -0.237 4.237 23 C -0.193 4.193 24 C -0.157 4.157 25 H 0.030 0.970 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.973 -6.187 15.314 16.988 hybrid contribution -0.131 -0.582 -1.095 1.247 sum 3.842 -6.769 14.219 16.210 Atomic orbital electron populations 1.22091 0.98306 0.99303 1.00809 1.18943 0.90813 0.94546 0.80075 0.91944 1.21348 1.31728 1.12835 0.90287 0.92287 1.24896 0.94982 0.94973 0.98979 1.69888 1.36534 1.22607 1.23621 0.86446 0.78611 0.79574 0.82792 1.19835 1.20943 1.20920 1.48203 1.49012 1.11493 1.23601 1.21680 1.01405 0.83551 0.99175 1.20320 0.78956 0.86985 0.84284 1.90639 1.58363 1.17225 1.76869 1.21364 0.98853 0.96700 0.95991 0.89180 1.22439 1.00698 0.97504 0.98945 1.22566 0.96000 0.91341 0.91499 1.87939 1.36572 1.32955 1.72029 1.21525 0.91554 0.86716 0.93100 1.22462 0.98887 1.02219 1.00099 1.21731 0.99687 0.98219 0.99687 1.21970 1.00131 0.97636 0.95926 0.97037 0.88831 0.95126 0.92760 0.93055 0.92922 0.90996 0.89197 0.90505 0.92978 0.88862 0.91999 0.91433 0.91890 0.91709 0.91103 0.92042 0.90252 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.95 37.16 0.33 -3.18 16 2 C 0.26 6.59 2.63 -69.08 -0.18 6.41 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.19 8.37 -34.44 -0.29 -14.48 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 7 N -0.89 -25.26 11.33 55.43 0.63 -24.63 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.59 -12.59 2.75 -175.26 -0.48 -13.07 16 13 C 0.09 1.41 8.04 59.85 0.48 1.89 16 14 C 0.51 10.56 7.08 -10.98 -0.08 10.48 16 15 O -0.55 -13.79 15.30 5.55 0.08 -13.71 16 16 C -0.11 -1.64 1.49 -91.59 -0.14 -1.77 16 17 H 0.09 1.20 5.89 -51.93 -0.31 0.89 16 18 C -0.16 -2.14 5.02 -26.59 -0.13 -2.27 16 19 C 0.06 0.71 6.52 37.21 0.24 0.95 16 20 O -0.38 -4.93 10.24 -35.23 -0.36 -5.30 16 21 C 0.11 1.32 1.11 -90.57 -0.10 1.22 16 22 C -0.18 -1.79 7.93 37.16 0.29 -1.50 16 23 C -0.14 -1.41 8.85 37.15 0.33 -1.08 16 24 C -0.12 -1.73 3.52 -26.59 -0.09 -1.82 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 2.47 6.08 -51.93 -0.32 2.15 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.05 0.81 7.02 -51.93 -0.36 0.45 16 30 H 0.05 0.68 5.98 -51.93 -0.31 0.37 16 31 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 32 H 0.09 1.13 4.64 -51.93 -0.24 0.89 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.51 6.34 -51.93 -0.33 0.18 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.62 4.98 -51.93 -0.26 0.36 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.32 8.03 -51.93 -0.42 0.91 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -31.41 323.47 -6.62 -38.03 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.92 Total: 1.20 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 0.57 Total: -3.50 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.15 Total: -37.70 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.28 Total: -19.00 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.41 -6.62 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350016232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.808 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds