Wall clock time and date at job start Mon Mar 30 2020 00:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.46497 * 120.00293 * 60.00238 * 12 2 1 14 14 C 1.34779 * 119.99892 * 239.99608 * 12 2 1 15 15 O 1.21285 * 119.99902 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00331 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.53839 * 299.82635 * 16 14 12 18 18 C 1.53178 * 109.54285 * 59.99773 * 16 14 12 19 19 C 1.53093 * 109.16422 * 176.85051 * 18 16 14 20 20 O 1.42901 * 109.41052 * 302.39445 * 19 18 16 21 21 C 1.42902 * 114.10430 * 61.16025 * 20 19 18 22 22 C 1.53003 * 109.47980 * 58.81449 * 21 20 19 23 23 C 1.52991 * 109.48459 * 178.84543 * 21 20 19 24 24 C 1.53100 * 109.41126 * 298.84106 * 21 20 19 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47299 * 89.99680 * 13 12 2 30 30 H 1.09003 * 109.47539 * 209.99447 * 13 12 2 31 31 H 1.08994 * 109.47071 * 329.99887 * 13 12 2 32 32 H 1.08997 * 109.52483 * 296.76298 * 18 16 14 33 33 H 1.09005 * 109.51748 * 56.88471 * 18 16 14 34 34 H 1.08993 * 109.47824 * 62.37265 * 19 18 16 35 35 H 1.08998 * 109.48172 * 182.41103 * 19 18 16 36 36 H 1.09008 * 109.46291 * 60.00805 * 22 21 20 37 37 H 1.08994 * 109.47005 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47262 * 300.00714 * 22 21 20 39 39 H 1.08996 * 109.47363 * 59.99703 * 23 21 20 40 40 H 1.09003 * 109.47129 * 180.02562 * 23 21 20 41 41 H 1.09003 * 109.47047 * 299.99389 * 23 21 20 42 42 H 1.08999 * 109.51801 * 297.70000 * 24 21 20 43 43 H 1.08999 * 109.51899 * 177.50862 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2958 -0.7460 3.3137 17 1 2.4490 -1.0866 3.9096 18 6 4.1472 -1.9497 2.8984 19 6 4.7176 -2.6183 4.1520 20 8 5.4811 -1.6645 4.8933 21 6 4.7262 -0.5398 5.3487 22 6 3.5786 -1.0221 6.2384 23 6 5.6352 0.3943 6.1499 24 6 4.1561 0.2122 4.1432 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7173 1.1669 -3.4844 29 1 2.4156 -2.7377 0.9720 30 1 1.6236 -2.2851 2.5004 31 1 0.6904 -2.3001 0.9848 32 1 3.5284 -2.6633 2.3545 33 1 4.9643 -1.6147 2.2593 34 1 3.9001 -2.9889 4.7702 35 1 5.3592 -3.4499 3.8605 36 1 3.9848 -1.5584 7.0962 37 1 3.0033 -0.1642 6.5861 38 1 2.9310 -1.6872 5.6673 39 1 6.4523 0.7380 5.5158 40 1 5.0590 1.2518 6.4975 41 1 6.0415 -0.1417 7.0076 42 1 4.9739 0.5909 3.5302 43 1 3.5435 1.0446 4.4896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350016232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:24 Heat of formation + Delta-G solvation = -110.113374 kcal Electronic energy + Delta-G solvation = -22239.956109 eV Core-core repulsion = 19091.166077 eV Total energy + Delta-G solvation = -3148.790032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67033 -39.98930 -37.20412 -35.29329 -34.59122 -34.14918 -31.20690 -29.29546 -28.23395 -27.63887 -27.30771 -25.85448 -23.69248 -22.43358 -20.23470 -19.91486 -18.57344 -17.95472 -17.28539 -16.99034 -16.84144 -16.31607 -15.86477 -15.44079 -15.26164 -14.85045 -14.53859 -14.27765 -13.98407 -13.80536 -13.51111 -13.35639 -13.10553 -12.99013 -12.94077 -12.78700 -12.67749 -12.67244 -12.34054 -12.28969 -12.19204 -12.11958 -12.02978 -11.65242 -11.22855 -11.05408 -10.73968 -10.54891 -10.19982 -9.33544 -8.16246 -6.32984 1.38874 1.40932 1.51972 1.77204 2.29997 2.47435 2.86967 3.11684 3.55046 3.64892 3.79364 3.88872 4.08686 4.16128 4.27648 4.41770 4.47836 4.51091 4.64845 4.67098 4.71422 4.78635 4.82958 4.86113 4.87315 4.91809 4.97750 5.03007 5.03708 5.13279 5.16185 5.18874 5.34463 5.43296 5.45683 5.61626 5.66195 6.02472 6.14760 6.38252 6.75341 6.82567 7.30689 7.47374 8.88317 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030730 B = 0.004825 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.943494 B = 5802.157110 C = 6002.243528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.004 0.996 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.264 1.264 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.598 5.598 13 C 0.080 3.920 14 C 0.495 3.505 15 O -0.608 6.608 16 C -0.095 4.095 17 H 0.123 0.877 18 C -0.154 4.154 19 C 0.064 3.936 20 O -0.391 6.391 21 C 0.112 3.888 22 C -0.176 4.176 23 C -0.137 4.137 24 C -0.117 4.117 25 H 0.019 0.981 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.264 0.736 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -9.810 17.187 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.157 3.843 3 H 0.022 0.978 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.328 5.328 13 C -0.062 4.062 14 C 0.285 3.715 15 O -0.490 6.490 16 C -0.116 4.116 17 H 0.140 0.860 18 C -0.192 4.192 19 C -0.012 4.012 20 O -0.311 6.311 21 C 0.073 3.927 22 C -0.233 4.233 23 C -0.194 4.194 24 C -0.155 4.155 25 H 0.038 0.962 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.816 -9.144 16.975 19.655 hybrid contribution -0.066 0.383 -1.606 1.653 sum 3.750 -8.761 15.368 18.083 Atomic orbital electron populations 1.21868 0.97034 1.00227 0.99894 1.18542 0.91726 0.92098 0.81948 0.97753 1.21591 1.31823 1.12889 0.91122 0.92167 1.25748 0.95111 0.95627 1.02074 1.70031 1.37474 1.23899 1.24346 0.85403 0.78246 0.78464 0.78872 1.18855 1.19819 1.21310 1.48213 1.48912 1.13383 1.22295 1.21987 1.01504 0.80500 1.02228 1.21407 0.77972 0.86598 0.85561 1.90606 1.60150 1.19940 1.78323 1.21368 1.00083 0.96852 0.93280 0.85983 1.22453 0.99691 0.96932 1.00122 1.22722 0.97129 0.91019 0.90351 1.87938 1.37634 1.33351 1.72186 1.21580 0.92565 0.86490 0.92086 1.22441 0.97983 1.02805 1.00105 1.21770 0.99307 0.98610 0.99745 1.21962 0.98915 0.97904 0.96741 0.96152 0.91503 0.93090 0.92667 0.92165 0.88547 0.91064 0.87762 0.93474 0.90203 0.87040 0.90499 0.90655 0.91231 0.93082 0.89961 0.90511 0.93638 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 8.95 71.98 0.64 -5.75 16 2 C 0.26 13.72 2.63 44.25 0.12 13.84 16 3 H 0.00 0.29 6.90 -2.39 -0.02 0.27 16 4 C -0.54 -29.45 8.37 25.60 0.21 -29.24 16 5 H 0.06 3.21 7.65 -2.91 -0.02 3.19 16 6 C 0.01 0.76 5.31 84.65 0.45 1.21 16 7 N -0.92 -53.61 11.33 21.45 0.24 -53.37 16 8 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 N -0.60 -25.43 2.75 -826.79 -2.28 -27.70 16 13 C 0.08 2.42 8.04 127.77 1.03 3.45 16 14 C 0.50 20.97 7.08 87.66 0.62 21.59 16 15 O -0.61 -32.16 15.30 -3.04 -0.05 -32.21 16 16 C -0.09 -2.76 1.49 -11.42 -0.02 -2.77 16 17 H 0.12 2.79 5.89 -2.39 -0.01 2.77 16 18 C -0.15 -3.86 5.02 30.68 0.15 -3.70 16 19 C 0.06 1.22 6.52 72.01 0.47 1.69 16 20 O -0.39 -9.33 10.24 -148.98 -1.52 -10.85 16 21 C 0.11 2.46 1.11 -10.76 -0.01 2.44 16 22 C -0.18 -2.84 7.93 71.98 0.57 -2.27 16 23 C -0.14 -2.65 8.85 71.98 0.64 -2.01 16 24 C -0.12 -3.40 3.52 30.69 0.11 -3.29 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 3.62 6.08 -2.38 -0.01 3.60 16 27 H 0.05 2.21 6.66 -2.39 -0.02 2.19 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.06 1.74 7.02 -2.39 -0.02 1.72 16 30 H 0.10 2.07 5.98 -2.39 -0.01 2.05 16 31 H 0.07 2.19 6.43 -2.39 -0.02 2.17 16 32 H 0.10 2.28 4.64 -2.39 -0.01 2.27 16 33 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 1.13 6.34 -2.39 -0.02 1.11 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.02 4.98 -2.39 -0.01 1.01 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.04 1.60 8.03 -2.39 -0.02 1.58 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -72.27 323.47 4.39 -67.88 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.99 Total: 15.61 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 4.98 Total: -4.83 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.03 Total: -81.07 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.57 Total: -43.06 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.27 4.39 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350016232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.236 kcal (2) G-P(sol) polarization free energy of solvation -72.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds