Wall clock time and date at job start Mon Mar 30 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46910 * 2 1 4 4 C 1.50702 * 109.47321 * 119.99376 * 2 1 3 5 5 H 1.08001 * 120.00056 * 119.99634 * 4 2 1 6 6 C 1.37881 * 120.00198 * 300.00386 * 4 2 1 7 7 N 1.31510 * 119.99629 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00137 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47096 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47297 * 119.99530 * 8 6 4 11 11 H 1.48502 * 109.46915 * 239.99998 * 8 6 4 12 12 N 1.46498 * 109.47021 * 239.99567 * 2 1 3 13 13 C 1.46495 * 119.99963 * 300.00010 * 12 2 1 14 14 C 1.34777 * 119.99960 * 119.99796 * 12 2 1 15 15 O 1.21281 * 119.99847 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00010 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.54521 * 59.82370 * 16 14 12 18 18 C 1.53181 * 109.61659 * 299.60236 * 16 14 12 19 19 C 1.53095 * 109.15977 * 183.10902 * 18 16 14 20 20 O 1.42921 * 109.42161 * 57.61110 * 19 18 16 21 21 C 1.42904 * 114.08576 * 298.84276 * 20 19 18 22 22 C 1.52997 * 109.48222 * 301.16926 * 21 20 19 23 23 C 1.53000 * 109.48113 * 181.14149 * 21 20 19 24 24 C 1.53097 * 109.42018 * 61.15784 * 21 20 19 25 25 H 1.09006 * 109.47048 * 300.00286 * 1 2 3 26 26 H 1.08996 * 109.47191 * 60.00302 * 1 2 3 27 27 H 1.08999 * 109.46862 * 180.02562 * 1 2 3 28 28 H 0.97009 * 119.99924 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47179 * 270.00016 * 13 12 2 30 30 H 1.08994 * 109.47207 * 29.99849 * 13 12 2 31 31 H 1.08999 * 109.47141 * 150.00280 * 13 12 2 32 32 H 1.09002 * 109.51923 * 303.01135 * 18 16 14 33 33 H 1.08997 * 109.52395 * 63.20472 * 18 16 14 34 34 H 1.09003 * 109.47929 * 177.59032 * 19 18 16 35 35 H 1.09000 * 109.47953 * 297.61206 * 19 18 16 36 36 H 1.09002 * 109.47153 * 299.97249 * 22 21 20 37 37 H 1.09001 * 109.46832 * 179.97438 * 22 21 20 38 38 H 1.09004 * 109.47261 * 59.97421 * 22 21 20 39 39 H 1.09001 * 109.47172 * 180.02562 * 23 21 20 40 40 H 1.09000 * 109.47351 * 300.02709 * 23 21 20 41 41 H 1.09002 * 109.47042 * 60.02879 * 23 21 20 42 42 H 1.08997 * 109.52633 * 62.28780 * 24 21 20 43 43 H 1.08992 * 109.52166 * 182.41712 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9436 0.8303 2.6033 8 14 2.3214 -1.1200 4.0080 9 1 3.1456 -2.2873 3.6040 10 1 3.1467 -0.1870 4.8165 11 1 1.1661 -1.5863 4.8162 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4278 14 6 2.7931 -0.0357 -2.0833 15 8 3.0865 1.1253 -1.8913 16 6 3.2959 -0.7464 -3.3134 17 1 2.4492 -1.0927 -3.9062 18 6 4.1560 -1.9445 -2.8997 19 6 4.7244 -2.6123 -4.1547 20 8 5.4793 -1.6557 -4.9015 21 6 4.7158 -0.5362 -5.3554 22 6 3.5670 -1.0265 -6.2390 23 6 5.6158 0.4017 -6.1624 24 6 4.1471 0.2150 -4.1487 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7095 1.1621 3.4844 29 1 2.4157 -2.7377 -0.9714 30 1 0.6905 -2.3002 -0.9844 31 1 1.6238 -2.2854 -2.5000 32 1 4.9747 -1.6036 -2.2659 33 1 3.5436 -2.6606 -2.3517 34 1 5.3719 -3.4397 -3.8646 35 1 3.9060 -2.9889 -4.7683 36 1 3.9721 -1.5617 -7.0978 37 1 2.9846 -0.1725 -6.5847 38 1 2.9259 -1.6947 -5.6638 39 1 5.0334 1.2558 -6.5082 40 1 6.4342 0.7509 -5.5328 41 1 6.0210 -0.1334 -7.0213 42 1 4.9656 0.5995 -3.5401 43 1 3.5293 1.0440 -4.4938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350016236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:28 Heat of formation + Delta-G solvation = -90.062683 kcal Electronic energy + Delta-G solvation = -22237.309179 eV Core-core repulsion = 19089.388610 eV Total energy + Delta-G solvation = -3147.920569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42085 -38.57928 -35.38930 -33.78566 -33.60462 -32.48297 -29.33864 -28.28368 -27.40812 -26.18037 -25.23673 -24.56503 -22.52972 -20.79235 -19.18689 -18.31769 -16.76800 -16.33507 -15.94749 -15.93171 -15.23486 -14.90748 -14.35702 -14.11490 -14.08275 -13.52898 -13.10254 -12.80328 -12.61923 -12.53931 -12.21750 -12.13901 -11.96212 -11.77147 -11.59055 -11.29485 -11.20143 -11.07540 -10.98442 -10.81961 -10.71783 -10.52251 -10.24041 -10.18744 -10.04616 -9.57087 -9.14845 -8.77157 -8.42483 -7.57678 -6.07438 -4.15279 3.25417 3.32785 3.35164 3.40085 3.74123 3.95382 4.39294 4.68355 4.78684 4.87857 4.91654 5.01237 5.20598 5.23566 5.36421 5.39317 5.45196 5.55155 5.62306 5.67810 5.68389 5.77789 5.84650 5.94266 5.99168 6.01841 6.08307 6.19678 6.26123 6.34205 6.46880 6.75554 6.81472 7.05413 7.28497 7.43930 7.52835 7.71794 8.01630 8.19966 8.54391 8.84039 9.07661 9.51466 10.97904 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.004821 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.811103 B = 5806.426890 C = 6008.549789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.592 5.592 13 C 0.086 3.914 14 C 0.508 3.492 15 O -0.552 6.552 16 C -0.108 4.108 17 H 0.090 0.910 18 C -0.157 4.157 19 C 0.062 3.938 20 O -0.375 6.375 21 C 0.110 3.890 22 C -0.179 4.179 23 C -0.136 4.136 24 C -0.119 4.119 25 H 0.093 0.907 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 -6.896 -15.553 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.323 5.323 13 C -0.058 4.058 14 C 0.295 3.705 15 O -0.431 6.431 16 C -0.129 4.129 17 H 0.108 0.892 18 C -0.195 4.195 19 C -0.014 4.014 20 O -0.295 6.295 21 C 0.071 3.929 22 C -0.237 4.237 23 C -0.193 4.193 24 C -0.157 4.157 25 H 0.112 0.888 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.969 -6.183 -15.318 16.988 hybrid contribution -0.139 -0.589 1.095 1.251 sum 3.830 -6.772 -14.222 16.211 Atomic orbital electron populations 1.22093 0.98309 0.99304 1.00820 1.18940 0.90808 0.94550 0.80082 0.91944 1.21350 1.31654 1.12909 0.90285 0.92288 1.24898 0.94974 0.94988 0.98981 1.69892 1.36495 1.22640 1.23618 0.86444 0.78588 0.79592 0.82790 1.19834 1.20913 1.20948 1.48201 1.49019 1.11489 1.23598 1.21675 1.01408 0.83547 0.99177 1.20313 0.78961 0.86983 0.84278 1.90638 1.58348 1.17244 1.76860 1.21365 0.98854 0.96722 0.95973 0.89192 1.22425 1.00619 0.97535 0.98935 1.22572 0.96137 0.91287 0.91422 1.87946 1.36589 1.33163 1.71791 1.21525 0.91456 0.86798 0.93119 1.22462 0.98874 1.02199 1.00133 1.21734 0.99755 0.98191 0.99647 1.21971 1.00215 0.97616 0.95875 0.88811 0.97038 0.95134 0.92764 0.93064 0.90997 0.92930 0.90502 0.89232 0.88862 0.92974 0.91994 0.91433 0.91893 0.91104 0.91711 0.92039 0.90251 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.95 37.16 0.33 -3.19 16 2 C 0.26 6.59 2.63 -69.08 -0.18 6.41 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.19 8.37 -34.44 -0.29 -14.48 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.59 -12.59 2.75 -175.27 -0.48 -13.07 16 13 C 0.09 1.41 8.05 59.84 0.48 1.89 16 14 C 0.51 10.56 7.08 -10.99 -0.08 10.49 16 15 O -0.55 -13.79 15.30 5.56 0.08 -13.71 16 16 C -0.11 -1.64 1.49 -91.59 -0.14 -1.77 16 17 H 0.09 1.20 5.87 -51.93 -0.30 0.89 16 18 C -0.16 -2.13 5.04 -26.59 -0.13 -2.26 16 19 C 0.06 0.71 6.51 37.21 0.24 0.95 16 20 O -0.38 -4.93 10.24 -35.23 -0.36 -5.29 16 21 C 0.11 1.32 1.11 -90.57 -0.10 1.22 16 22 C -0.18 -1.79 7.93 37.16 0.29 -1.50 16 23 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 24 C -0.12 -1.73 3.52 -26.59 -0.09 -1.83 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.05 0.81 7.03 -51.93 -0.36 0.45 16 30 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 31 H 0.05 0.68 5.99 -51.93 -0.31 0.37 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.13 4.69 -51.93 -0.24 0.89 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.51 6.34 -51.93 -0.33 0.18 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.62 4.97 -51.93 -0.26 0.36 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.32 8.03 -51.93 -0.42 0.91 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -31.40 323.50 -6.63 -38.03 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.92 Total: 1.20 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 0.57 Total: -3.50 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.15 Total: -37.70 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.28 Total: -19.00 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.40 -6.63 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350016236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.036 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds