Wall clock time and date at job start Mon Mar 30 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46910 * 2 1 4 4 C 1.50702 * 109.47321 * 119.99376 * 2 1 3 5 5 H 1.08001 * 120.00056 * 119.99634 * 4 2 1 6 6 C 1.37881 * 120.00198 * 300.00386 * 4 2 1 7 7 N 1.31510 * 119.99629 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00137 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47096 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47297 * 119.99530 * 8 6 4 11 11 H 1.48502 * 109.46915 * 239.99998 * 8 6 4 12 12 N 1.46498 * 109.47021 * 239.99567 * 2 1 3 13 13 C 1.46495 * 119.99963 * 300.00010 * 12 2 1 14 14 C 1.34777 * 119.99960 * 119.99796 * 12 2 1 15 15 O 1.21281 * 119.99847 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00010 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.54521 * 59.82370 * 16 14 12 18 18 C 1.53181 * 109.61659 * 299.60236 * 16 14 12 19 19 C 1.53095 * 109.15977 * 183.10902 * 18 16 14 20 20 O 1.42921 * 109.42161 * 57.61110 * 19 18 16 21 21 C 1.42904 * 114.08576 * 298.84276 * 20 19 18 22 22 C 1.52997 * 109.48222 * 301.16926 * 21 20 19 23 23 C 1.53000 * 109.48113 * 181.14149 * 21 20 19 24 24 C 1.53097 * 109.42018 * 61.15784 * 21 20 19 25 25 H 1.09006 * 109.47048 * 300.00286 * 1 2 3 26 26 H 1.08996 * 109.47191 * 60.00302 * 1 2 3 27 27 H 1.08999 * 109.46862 * 180.02562 * 1 2 3 28 28 H 0.97009 * 119.99924 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47179 * 270.00016 * 13 12 2 30 30 H 1.08994 * 109.47207 * 29.99849 * 13 12 2 31 31 H 1.08999 * 109.47141 * 150.00280 * 13 12 2 32 32 H 1.09002 * 109.51923 * 303.01135 * 18 16 14 33 33 H 1.08997 * 109.52395 * 63.20472 * 18 16 14 34 34 H 1.09003 * 109.47929 * 177.59032 * 19 18 16 35 35 H 1.09000 * 109.47953 * 297.61206 * 19 18 16 36 36 H 1.09002 * 109.47153 * 299.97249 * 22 21 20 37 37 H 1.09001 * 109.46832 * 179.97438 * 22 21 20 38 38 H 1.09004 * 109.47261 * 59.97421 * 22 21 20 39 39 H 1.09001 * 109.47172 * 180.02562 * 23 21 20 40 40 H 1.09000 * 109.47351 * 300.02709 * 23 21 20 41 41 H 1.09002 * 109.47042 * 60.02879 * 23 21 20 42 42 H 1.08997 * 109.52633 * 62.28780 * 24 21 20 43 43 H 1.08992 * 109.52166 * 182.41712 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9436 0.8303 2.6033 8 14 2.3214 -1.1200 4.0080 9 1 3.1456 -2.2873 3.6040 10 1 3.1467 -0.1870 4.8165 11 1 1.1661 -1.5863 4.8162 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4278 14 6 2.7931 -0.0357 -2.0833 15 8 3.0865 1.1253 -1.8913 16 6 3.2959 -0.7464 -3.3134 17 1 2.4492 -1.0927 -3.9062 18 6 4.1560 -1.9445 -2.8997 19 6 4.7244 -2.6123 -4.1547 20 8 5.4793 -1.6557 -4.9015 21 6 4.7158 -0.5362 -5.3554 22 6 3.5670 -1.0265 -6.2390 23 6 5.6158 0.4017 -6.1624 24 6 4.1471 0.2150 -4.1487 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7095 1.1621 3.4844 29 1 2.4157 -2.7377 -0.9714 30 1 0.6905 -2.3002 -0.9844 31 1 1.6238 -2.2854 -2.5000 32 1 4.9747 -1.6036 -2.2659 33 1 3.5436 -2.6606 -2.3517 34 1 5.3719 -3.4397 -3.8646 35 1 3.9060 -2.9889 -4.7683 36 1 3.9721 -1.5617 -7.0978 37 1 2.9846 -0.1725 -6.5847 38 1 2.9259 -1.6947 -5.6638 39 1 5.0334 1.2558 -6.5082 40 1 6.4342 0.7509 -5.5328 41 1 6.0210 -0.1334 -7.0213 42 1 4.9656 0.5995 -3.5401 43 1 3.5293 1.0440 -4.4938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350016236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:28 Heat of formation + Delta-G solvation = -110.331029 kcal Electronic energy + Delta-G solvation = -22238.188081 eV Core-core repulsion = 19089.388610 eV Total energy + Delta-G solvation = -3148.799471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66794 -39.98950 -37.20419 -35.28870 -34.59043 -34.15095 -31.20745 -29.29361 -28.23283 -27.63876 -27.30679 -25.85375 -23.69521 -22.43287 -20.23613 -19.91146 -18.57229 -17.95642 -17.28584 -16.99038 -16.84001 -16.31458 -15.86486 -15.44274 -15.26066 -14.85067 -14.53729 -14.27749 -13.98477 -13.80447 -13.51131 -13.35682 -13.10215 -12.98992 -12.94155 -12.78868 -12.67561 -12.67176 -12.34791 -12.28816 -12.19215 -12.11908 -12.02923 -11.65538 -11.22873 -11.05550 -10.73988 -10.54777 -10.20128 -9.33564 -8.16234 -6.32916 1.38985 1.40894 1.52002 1.77170 2.30042 2.47467 2.86968 3.11692 3.55086 3.64856 3.79309 3.88823 4.08682 4.16014 4.27636 4.41732 4.47766 4.51115 4.64861 4.67029 4.71383 4.78651 4.82955 4.86093 4.87297 4.91755 4.97731 5.02990 5.03748 5.13292 5.16199 5.18784 5.34425 5.43285 5.45666 5.61642 5.66220 6.02475 6.14818 6.38081 6.75348 6.82586 7.30683 7.47394 8.88301 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.004821 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.811103 B = 5806.426890 C = 6008.549789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.004 0.996 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.264 1.264 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.598 5.598 13 C 0.080 3.920 14 C 0.496 3.504 15 O -0.607 6.607 16 C -0.095 4.095 17 H 0.122 0.878 18 C -0.154 4.154 19 C 0.064 3.936 20 O -0.391 6.391 21 C 0.112 3.888 22 C -0.176 4.176 23 C -0.137 4.137 24 C -0.117 4.117 25 H 0.066 0.934 26 H 0.019 0.981 27 H 0.050 0.950 28 H 0.264 0.736 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -9.810 -17.184 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.157 3.843 3 H 0.022 0.978 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.328 5.328 13 C -0.062 4.062 14 C 0.285 3.715 15 O -0.490 6.490 16 C -0.116 4.116 17 H 0.140 0.860 18 C -0.191 4.191 19 C -0.012 4.012 20 O -0.311 6.311 21 C 0.073 3.927 22 C -0.233 4.233 23 C -0.194 4.194 24 C -0.155 4.155 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.810 -9.144 -16.973 19.652 hybrid contribution -0.073 0.378 1.606 1.651 sum 3.737 -8.766 -15.368 18.082 Atomic orbital electron populations 1.21870 0.97040 1.00225 0.99907 1.18539 0.91718 0.92102 0.81955 0.97753 1.21593 1.31759 1.12963 0.91124 0.92169 1.25750 0.95091 0.95649 1.02074 1.70035 1.37430 1.23932 1.24345 0.85401 0.78241 0.78471 0.78862 1.18853 1.21294 1.19830 1.48212 1.48920 1.13377 1.22293 1.21982 1.01504 0.80497 1.02229 1.21399 0.77976 0.86596 0.85553 1.90605 1.60134 1.19959 1.78314 1.21368 1.00093 0.96873 0.93257 0.85996 1.22440 0.99590 0.96969 1.00133 1.22728 0.97286 0.90961 0.90257 1.87944 1.37646 1.33560 1.71949 1.21580 0.92463 0.86586 0.92097 1.22441 0.97968 1.02772 1.00153 1.21772 0.99384 0.98570 0.99707 1.21963 0.98993 0.97876 0.96702 0.91479 0.96154 0.93103 0.92669 0.92174 0.91068 0.88556 0.93464 0.87803 0.87040 0.90200 0.90494 0.90655 0.91233 0.89964 0.93084 0.90509 0.93636 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.95 71.98 0.64 -5.77 16 2 C 0.26 13.72 2.63 44.25 0.12 13.84 16 3 H 0.00 0.29 6.90 -2.39 -0.02 0.27 16 4 C -0.54 -29.46 8.37 25.60 0.21 -29.25 16 5 H 0.06 3.21 7.65 -2.91 -0.02 3.19 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 8 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.60 -25.43 2.75 -826.82 -2.28 -27.70 16 13 C 0.08 2.42 8.05 127.77 1.03 3.45 16 14 C 0.50 20.97 7.08 87.66 0.62 21.59 16 15 O -0.61 -32.16 15.30 -3.03 -0.05 -32.21 16 16 C -0.10 -2.76 1.49 -11.42 -0.02 -2.78 16 17 H 0.12 2.79 5.87 -2.39 -0.01 2.77 16 18 C -0.15 -3.84 5.04 30.69 0.15 -3.69 16 19 C 0.06 1.22 6.51 72.01 0.47 1.69 16 20 O -0.39 -9.32 10.24 -148.98 -1.53 -10.85 16 21 C 0.11 2.45 1.11 -10.76 -0.01 2.44 16 22 C -0.18 -2.84 7.93 71.98 0.57 -2.27 16 23 C -0.14 -2.65 8.85 71.98 0.64 -2.01 16 24 C -0.12 -3.40 3.52 30.69 0.11 -3.29 16 25 H 0.07 3.63 6.07 -2.38 -0.01 3.62 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 2.21 6.66 -2.39 -0.02 2.19 16 28 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 29 H 0.06 1.73 7.03 -2.39 -0.02 1.72 16 30 H 0.07 2.19 6.43 -2.39 -0.02 2.17 16 31 H 0.10 2.07 5.99 -2.39 -0.01 2.05 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 2.28 4.69 -2.39 -0.01 2.27 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.13 6.34 -2.39 -0.02 1.12 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.02 4.97 -2.38 -0.01 1.01 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.04 1.60 8.03 -2.39 -0.02 1.58 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -72.26 323.50 4.39 -67.86 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.99 Total: 15.62 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 4.98 Total: -4.83 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.03 Total: -81.06 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.57 Total: -43.05 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.26 4.39 -67.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350016236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.469 kcal (2) G-P(sol) polarization free energy of solvation -72.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds