Wall clock time and date at job start Mon Mar 30 2020 01:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46973 * 2 1 4 4 C 1.46503 * 120.00391 * 269.99823 * 3 2 1 5 5 C 1.50700 * 109.47168 * 270.00295 * 4 3 2 6 6 H 1.08000 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99984 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00181 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47366 * 90.00157 * 9 7 5 11 11 H 1.48506 * 109.47310 * 210.00626 * 9 7 5 12 12 H 1.48500 * 109.47043 * 330.00154 * 9 7 5 13 13 C 1.34777 * 120.00040 * 90.00138 * 3 2 1 14 14 O 1.21283 * 120.00152 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00119 * 359.97438 * 13 3 2 16 16 C 1.52996 * 109.47270 * 179.97438 * 15 13 3 17 17 H 1.09001 * 109.47372 * 305.00448 * 16 15 13 18 18 C 1.53002 * 109.46891 * 65.00484 * 16 15 13 19 19 C 1.52996 * 109.46891 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47328 * 299.99597 * 19 18 16 21 21 C 1.52997 * 109.47060 * 60.00126 * 20 19 18 22 22 C 1.52997 * 109.46975 * 185.00076 * 16 15 13 23 23 H 1.09001 * 109.47375 * 300.00370 * 22 16 15 24 24 O 1.42900 * 109.47084 * 60.00512 * 22 16 15 25 25 H 1.09005 * 109.46993 * 59.99871 * 1 2 3 26 26 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47504 * 300.00187 * 1 2 3 28 28 H 1.09000 * 109.47324 * 240.00336 * 2 1 3 29 29 H 1.08995 * 109.47495 * 119.99940 * 2 1 3 30 30 H 1.09005 * 109.46349 * 29.99993 * 4 3 2 31 31 H 1.08992 * 109.47365 * 149.99896 * 4 3 2 32 32 H 0.97001 * 119.99960 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46686 * 60.00138 * 15 13 3 34 34 H 1.09000 * 109.47163 * 300.00936 * 15 13 3 35 35 H 1.08992 * 109.47056 * 59.99654 * 18 16 15 36 36 H 1.09004 * 109.47006 * 299.99770 * 18 16 15 37 37 H 1.09004 * 109.47368 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.47372 * 59.99964 * 19 18 16 39 39 H 1.09002 * 109.47398 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47194 * 300.00476 * 20 19 18 41 41 H 1.08998 * 109.47533 * 59.99948 * 21 20 19 42 42 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 43 43 H 0.96708 * 114.00004 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1491 2.3898 -2.8778 8 7 3.3491 3.1260 -3.6180 9 14 5.9131 2.0957 -3.4175 10 1 5.9760 0.8747 -4.2602 11 1 6.3924 3.2630 -4.2006 12 1 6.7735 1.9159 -2.2205 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3064 2.4724 16 6 2.3234 2.2435 3.6352 17 1 3.3454 2.6072 3.5283 18 6 1.3565 3.4292 3.6268 19 6 1.6882 4.3660 4.7901 20 6 1.5522 3.6066 6.1113 21 6 2.5190 2.4208 6.1198 22 6 2.1878 1.4843 4.9566 23 1 1.1658 1.1206 5.0635 24 8 3.0908 0.3769 4.9646 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5817 1.6877 -2.0283 31 1 2.0955 3.1411 -1.1384 32 1 3.6752 3.5165 -4.4439 33 1 2.6212 0.4187 2.5302 34 1 0.9432 1.0125 2.5299 35 1 0.3347 3.0655 3.7336 36 1 1.4531 3.9701 2.6853 37 1 0.9997 5.2111 4.7838 38 1 2.7102 4.7298 4.6836 39 1 1.7881 4.2741 6.9401 40 1 0.5302 3.2428 6.2177 41 1 3.5410 2.7844 6.0133 42 1 2.4219 1.8794 7.0608 43 1 3.0593 -0.1506 5.7745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442032646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:11 Heat of formation + Delta-G solvation = -116.718971 kcal Electronic energy + Delta-G solvation = -21771.238417 eV Core-core repulsion = 18622.161944 eV Total energy + Delta-G solvation = -3149.076473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75171 -38.33246 -35.61148 -35.11374 -32.90926 -32.24263 -29.99971 -29.65357 -27.82613 -26.00893 -23.01172 -22.83434 -22.42150 -21.11005 -19.78241 -18.10484 -17.25531 -16.47681 -16.20794 -15.48458 -15.03906 -14.88949 -14.36745 -14.27645 -13.86829 -13.63140 -13.26096 -13.02497 -12.87053 -12.60477 -12.19548 -12.07206 -11.84506 -11.68125 -11.38809 -11.24766 -11.15527 -10.88333 -10.81761 -10.66716 -10.62652 -10.46147 -10.25844 -10.08962 -10.06580 -9.76683 -9.54738 -8.66485 -8.38376 -7.55247 -5.99127 -4.03325 3.33556 3.39905 3.44710 3.57747 4.02581 4.17935 4.49324 4.65906 4.71077 4.94181 5.14431 5.16869 5.30058 5.35280 5.36878 5.41386 5.43843 5.52084 5.63960 5.65399 5.73419 5.77190 5.92111 5.97630 5.99224 6.07531 6.09681 6.23205 6.28076 6.29987 6.35708 6.56086 6.61870 6.67238 7.15846 7.51846 7.62062 7.65580 7.98334 8.30568 8.54726 8.97434 9.22590 9.61888 11.08866 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.004830 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.589111 B = 5795.822254 C = 6103.159786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.246 3.754 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.542 6.542 15 C -0.133 4.133 16 C -0.060 4.060 17 H 0.084 0.916 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.150 4.150 22 C 0.109 3.891 23 H 0.052 0.948 24 O -0.564 6.564 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 -5.342 18.034 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.127 3.873 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.420 6.420 15 C -0.173 4.173 16 C -0.079 4.079 17 H 0.102 0.898 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.188 4.188 22 C 0.050 3.950 23 H 0.070 0.930 24 O -0.369 6.369 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.361 -4.386 17.234 18.886 hybrid contribution 0.791 -0.494 0.153 0.945 sum -5.570 -4.880 17.387 18.898 Atomic orbital electron populations 1.22214 0.96978 1.01264 1.02190 1.21392 0.93359 0.84396 1.02624 1.48263 1.63816 1.13181 1.07844 1.19233 0.96114 0.93612 0.78361 1.21461 0.97010 1.31643 1.06100 0.92525 1.24930 0.97783 0.94977 0.96437 1.69940 1.35654 1.33622 1.14343 0.86514 0.84832 0.77619 0.78573 1.20682 1.21127 1.19903 1.20378 0.78197 0.86930 0.85212 1.90612 1.45971 1.18218 1.87217 1.21711 1.02654 0.99959 0.93000 1.20847 1.01793 0.94276 0.91004 0.89778 1.21714 0.97544 0.95970 1.00377 1.21549 1.02088 0.98040 0.94087 1.21497 0.99122 0.96729 0.98046 1.22241 1.00903 0.97518 0.98117 1.21881 0.91857 0.85967 0.95262 0.93012 1.86584 1.64112 1.42785 1.43409 0.92163 0.92301 0.93114 0.90180 0.91625 0.95233 0.93969 0.92815 0.88828 0.90156 0.92817 0.88720 0.92028 0.91725 0.92089 0.92131 0.91074 0.92149 0.78194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.11 1.79 5.93 -4.04 -0.02 1.77 16 3 N -0.60 -13.03 2.46 -175.06 -0.43 -13.46 16 4 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 5 C -0.52 -15.21 9.39 -34.44 -0.32 -15.54 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.51 10.74 7.39 -10.98 -0.08 10.66 16 14 O -0.54 -13.58 13.54 5.56 0.08 -13.51 16 15 C -0.13 -2.12 3.65 -27.88 -0.10 -2.22 16 16 C -0.06 -0.89 1.58 -90.62 -0.14 -1.04 16 17 H 0.08 1.48 7.96 -51.93 -0.41 1.07 16 18 C -0.12 -1.68 4.94 -26.73 -0.13 -1.81 16 19 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 20 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 21 C -0.15 -1.48 5.54 -26.76 -0.15 -1.63 16 22 C 0.11 1.25 2.90 -26.76 -0.08 1.17 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 O -0.56 -6.56 12.56 -35.23 -0.44 -7.00 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.67 7.22 -51.93 -0.37 0.29 16 28 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 29 H 0.07 0.95 6.44 -51.93 -0.33 0.62 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.09 1.48 6.79 -51.93 -0.35 1.12 16 34 H 0.08 1.10 7.18 -51.93 -0.37 0.73 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.67 5.95 -51.93 -0.31 1.36 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.37 2.57 9.08 45.56 0.41 2.98 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -33.60 338.46 -7.81 -41.42 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.74 Total: 1.74 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -1.09 Total: -5.26 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.31 Total: -39.82 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.37 Total: -20.51 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.60 -7.81 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442032646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.303 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds