Wall clock time and date at job start Mon Mar 30 2020 01:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46973 * 2 1 4 4 C 1.46503 * 120.00391 * 269.99823 * 3 2 1 5 5 C 1.50700 * 109.47168 * 270.00295 * 4 3 2 6 6 H 1.08000 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99984 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00181 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47366 * 90.00157 * 9 7 5 11 11 H 1.48506 * 109.47310 * 210.00626 * 9 7 5 12 12 H 1.48500 * 109.47043 * 330.00154 * 9 7 5 13 13 C 1.34777 * 120.00040 * 90.00138 * 3 2 1 14 14 O 1.21283 * 120.00152 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00119 * 359.97438 * 13 3 2 16 16 C 1.52996 * 109.47270 * 179.97438 * 15 13 3 17 17 H 1.09001 * 109.47372 * 305.00448 * 16 15 13 18 18 C 1.53002 * 109.46891 * 65.00484 * 16 15 13 19 19 C 1.52996 * 109.46891 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47328 * 299.99597 * 19 18 16 21 21 C 1.52997 * 109.47060 * 60.00126 * 20 19 18 22 22 C 1.52997 * 109.46975 * 185.00076 * 16 15 13 23 23 H 1.09001 * 109.47375 * 300.00370 * 22 16 15 24 24 O 1.42900 * 109.47084 * 60.00512 * 22 16 15 25 25 H 1.09005 * 109.46993 * 59.99871 * 1 2 3 26 26 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47504 * 300.00187 * 1 2 3 28 28 H 1.09000 * 109.47324 * 240.00336 * 2 1 3 29 29 H 1.08995 * 109.47495 * 119.99940 * 2 1 3 30 30 H 1.09005 * 109.46349 * 29.99993 * 4 3 2 31 31 H 1.08992 * 109.47365 * 149.99896 * 4 3 2 32 32 H 0.97001 * 119.99960 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46686 * 60.00138 * 15 13 3 34 34 H 1.09000 * 109.47163 * 300.00936 * 15 13 3 35 35 H 1.08992 * 109.47056 * 59.99654 * 18 16 15 36 36 H 1.09004 * 109.47006 * 299.99770 * 18 16 15 37 37 H 1.09004 * 109.47368 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.47372 * 59.99964 * 19 18 16 39 39 H 1.09002 * 109.47398 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47194 * 300.00476 * 20 19 18 41 41 H 1.08998 * 109.47533 * 59.99948 * 21 20 19 42 42 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 43 43 H 0.96708 * 114.00004 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1491 2.3898 -2.8778 8 7 3.3491 3.1260 -3.6180 9 14 5.9131 2.0957 -3.4175 10 1 5.9760 0.8747 -4.2602 11 1 6.3924 3.2630 -4.2006 12 1 6.7735 1.9159 -2.2205 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3064 2.4724 16 6 2.3234 2.2435 3.6352 17 1 3.3454 2.6072 3.5283 18 6 1.3565 3.4292 3.6268 19 6 1.6882 4.3660 4.7901 20 6 1.5522 3.6066 6.1113 21 6 2.5190 2.4208 6.1198 22 6 2.1878 1.4843 4.9566 23 1 1.1658 1.1206 5.0635 24 8 3.0908 0.3769 4.9646 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5817 1.6877 -2.0283 31 1 2.0955 3.1411 -1.1384 32 1 3.6752 3.5165 -4.4439 33 1 2.6212 0.4187 2.5302 34 1 0.9432 1.0125 2.5299 35 1 0.3347 3.0655 3.7336 36 1 1.4531 3.9701 2.6853 37 1 0.9997 5.2111 4.7838 38 1 2.7102 4.7298 4.6836 39 1 1.7881 4.2741 6.9401 40 1 0.5302 3.2428 6.2177 41 1 3.5410 2.7844 6.0133 42 1 2.4219 1.8794 7.0608 43 1 3.0593 -0.1506 5.7745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442032646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:11 Heat of formation + Delta-G solvation = -140.030302 kcal Electronic energy + Delta-G solvation = -21772.249272 eV Core-core repulsion = 18622.161944 eV Total energy + Delta-G solvation = -3150.087328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12818 -39.60668 -36.98791 -36.34491 -34.96209 -33.54965 -31.56508 -30.59800 -29.50012 -27.58531 -24.88719 -24.14152 -23.48318 -22.25806 -20.77504 -19.74298 -18.62340 -18.12379 -17.83510 -17.17463 -16.36708 -16.27122 -16.02476 -15.30395 -15.05725 -14.81511 -14.63374 -14.38677 -14.13534 -13.90064 -13.70419 -13.48997 -13.24686 -13.16003 -12.90934 -12.69255 -12.52979 -12.49422 -12.27119 -12.15696 -11.89404 -11.83356 -11.72726 -11.57346 -11.32039 -11.10466 -10.66544 -10.64640 -10.33197 -9.39144 -8.23477 -6.38566 1.33835 1.37124 1.47635 1.90232 2.32004 2.47547 3.05288 3.33711 3.67692 3.68308 3.95649 4.08158 4.16204 4.19734 4.32003 4.38531 4.44095 4.47622 4.49575 4.60522 4.61352 4.73687 4.83867 4.92060 4.99324 5.04140 5.05579 5.09455 5.20812 5.22209 5.27989 5.28271 5.32541 5.39976 5.49455 5.57635 5.59085 5.88874 6.06888 6.69465 6.85094 7.03020 7.27997 7.55233 8.83352 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.004830 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.589111 B = 5795.822254 C = 6103.159786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.607 5.607 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.049 0.951 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.276 1.276 13 C 0.494 3.506 14 O -0.592 6.592 15 C -0.116 4.116 16 C -0.062 4.062 17 H 0.042 0.958 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.147 4.147 22 C 0.117 3.883 23 H 0.078 0.922 24 O -0.584 6.584 25 H 0.037 0.963 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.020 0.980 31 H -0.005 1.005 32 H 0.267 0.733 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 -7.622 20.308 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.201 1.201 13 C 0.283 3.717 14 O -0.474 6.474 15 C -0.156 4.156 16 C -0.081 4.081 17 H 0.061 0.939 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.148 4.148 21 C -0.185 4.185 22 C 0.059 3.941 23 H 0.096 0.904 24 O -0.392 6.392 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.038 0.962 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.995 -6.719 19.535 21.811 hybrid contribution 0.969 0.233 -0.571 1.149 sum -6.026 -6.486 18.964 20.929 Atomic orbital electron populations 1.22140 0.94380 1.03504 1.01680 1.21720 0.95473 0.81491 1.03604 1.48326 1.64071 1.15049 1.06343 1.18662 0.95110 0.91469 0.80636 1.21710 0.97976 1.31988 1.06512 0.93276 1.25856 1.02435 0.94421 0.96376 1.70056 1.37773 1.34200 1.14784 0.85419 0.78930 0.78337 0.78141 1.18604 1.20418 1.20061 1.21444 0.76928 0.86596 0.86702 1.90592 1.48019 1.20689 1.88063 1.21685 1.04693 0.99506 0.89712 1.20838 0.99502 0.94804 0.92972 0.93932 1.21614 0.98653 0.95952 0.99124 1.21544 1.00993 0.98285 0.94962 1.21474 1.00168 0.96592 0.96521 1.22229 0.99825 0.97548 0.98883 1.21751 0.93132 0.86053 0.93183 0.90392 1.86525 1.64342 1.43066 1.45313 0.94355 0.88579 0.91975 0.91293 0.88524 0.96205 0.98649 0.92388 0.88015 0.86839 0.90589 0.93320 0.91231 0.93858 0.90596 0.90220 0.93037 0.89007 0.75589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.10 3.24 5.93 86.38 0.51 3.75 16 3 N -0.61 -27.17 2.46 -826.15 -2.03 -29.20 16 4 C 0.26 14.86 5.16 85.63 0.44 15.30 16 5 C -0.54 -32.79 9.39 25.60 0.24 -32.55 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.47 5.46 84.65 0.46 0.94 16 8 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 9 Si 0.97 46.52 29.54 68.60 2.03 48.55 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 C 0.49 21.69 7.39 87.66 0.65 22.33 16 14 O -0.59 -31.84 13.54 -3.04 -0.04 -31.88 16 15 C -0.12 -3.57 3.65 29.85 0.11 -3.46 16 16 C -0.06 -1.81 1.58 -10.80 -0.02 -1.83 16 17 H 0.04 1.58 7.96 -2.39 -0.02 1.56 16 18 C -0.12 -3.30 4.94 30.59 0.15 -3.15 16 19 C -0.12 -2.82 5.92 30.59 0.18 -2.64 16 20 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 21 C -0.15 -2.48 5.54 30.58 0.17 -2.31 16 22 C 0.12 2.34 2.90 30.58 0.09 2.43 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 O -0.58 -11.84 12.56 -148.98 -1.87 -13.71 16 25 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.46 7.22 -2.39 -0.02 1.44 16 28 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 29 H 0.10 2.55 6.44 -2.39 -0.02 2.53 16 30 H 0.02 1.14 8.07 -2.38 -0.02 1.12 16 31 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.10 3.00 6.79 -2.39 -0.02 2.98 16 34 H 0.11 2.73 7.18 -2.39 -0.02 2.72 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.84 5.95 -2.38 -0.01 1.83 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.39 3.93 9.08 -74.05 -0.67 3.25 16 Total: -1.00 -78.56 338.46 2.58 -75.98 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.31 Total: 13.95 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 3.91 Total: -6.17 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -1.74 Total: -86.71 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.91 Total: -45.59 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.56 2.58 -75.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442032646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.049 kcal (2) G-P(sol) polarization free energy of solvation -78.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds