Wall clock time and date at job start Mon Mar 30 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 H 1.09007 * 109.46916 * 325.00088 * 15 14 12 17 17 C 1.53002 * 109.47001 * 84.99506 * 15 14 12 18 18 O 1.42904 * 109.46730 * 65.00853 * 17 15 14 19 19 C 1.52992 * 109.47445 * 204.99941 * 15 14 12 20 20 C 1.53004 * 109.47157 * 64.99853 * 19 15 14 21 21 C 1.54269 * 110.03047 * 292.16942 * 20 19 15 22 22 C 1.54895 * 104.18968 * 217.10335 * 21 20 19 23 23 C 1.54886 * 102.75116 * 37.94527 * 22 21 20 24 24 C 1.53871 * 110.03294 * 175.00048 * 20 19 15 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 30 30 H 1.09000 * 109.46800 * 184.99981 * 17 15 14 31 31 H 1.08998 * 109.47706 * 305.00251 * 17 15 14 32 32 H 0.96701 * 113.99613 * 180.02562 * 18 17 15 33 33 H 1.09002 * 109.47437 * 184.99634 * 19 15 14 34 34 H 1.09001 * 109.47477 * 304.99815 * 19 15 14 35 35 H 1.08999 * 110.01579 * 53.61201 * 20 19 15 36 36 H 1.08993 * 110.48778 * 335.77816 * 21 20 19 37 37 H 1.08997 * 110.48576 * 98.42630 * 21 20 19 38 38 H 1.09002 * 110.75732 * 279.62269 * 22 21 20 39 39 H 1.09003 * 110.91127 * 156.32927 * 22 21 20 40 40 H 1.08999 * 110.48311 * 203.37895 * 23 22 21 41 41 H 1.08996 * 110.48662 * 80.73327 * 23 22 21 42 42 H 1.09003 * 110.03577 * 238.57054 * 24 20 19 43 43 H 1.08995 * 110.03219 * 359.95120 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 1 3.1938 -1.3332 -3.4616 17 6 1.2501 -2.0943 -3.9944 18 8 -0.0295 -1.5707 -4.3558 19 6 2.2462 0.0424 -4.8221 20 6 3.2834 1.1288 -4.5308 21 6 2.8051 2.0166 -3.3633 22 6 3.2744 3.4406 -3.7521 23 6 3.0453 3.4698 -5.2837 24 6 3.4361 2.0527 -5.7517 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 1.1487 0.5386 -2.5436 30 1 1.6594 -2.6623 -4.8299 31 1 1.1441 -2.7474 -3.1282 32 1 -0.6805 -2.2475 -4.5863 33 1 2.5238 -0.4904 -5.7316 34 1 1.2666 0.5015 -4.9546 35 1 4.2426 0.6728 -4.2854 36 1 1.7190 1.9828 -3.2785 37 1 3.2716 1.7028 -2.4295 38 1 4.3299 3.5772 -3.5167 39 1 2.6683 4.1989 -3.2564 40 1 3.6870 4.2165 -5.7512 41 1 1.9979 3.6706 -5.5089 42 1 4.4695 2.0458 -6.0984 43 1 2.7720 1.7266 -6.5520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001448257062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:32 Heat of formation + Delta-G solvation = -115.006607 kcal Electronic energy + Delta-G solvation = -21963.444890 eV Core-core repulsion = 18814.442671 eV Total energy + Delta-G solvation = -3149.002219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.56287 -37.96354 -36.72564 -34.23863 -33.64687 -31.42259 -30.08619 -28.57294 -28.28346 -25.06838 -24.66983 -22.84141 -20.76071 -20.57963 -19.81432 -18.88259 -17.29719 -16.45896 -15.96353 -15.65356 -15.21043 -15.00484 -14.50627 -14.33114 -13.62619 -13.42448 -13.31046 -13.23289 -12.77921 -12.47168 -12.28017 -11.77585 -11.44910 -11.21033 -11.07767 -10.95465 -10.86957 -10.71976 -10.63120 -10.62208 -10.50060 -10.41876 -10.26249 -10.17510 -9.91168 -9.82638 -8.91462 -8.51650 -8.28569 -8.21532 -5.97681 -4.00485 3.38931 3.41259 3.46758 3.81631 4.00212 4.47676 4.51842 4.60427 4.70721 4.73407 5.09332 5.28300 5.35497 5.38256 5.48613 5.51733 5.65528 5.66706 5.74245 5.77114 5.81768 5.90465 5.97014 6.01248 6.10411 6.19395 6.26019 6.35004 6.43627 6.48953 6.58801 6.71503 6.92509 7.01852 7.25138 7.55854 7.72660 7.82801 8.06015 8.24566 8.56578 9.08067 9.35592 9.64793 11.09844 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.005461 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.974531 B = 5125.865208 C = 5900.206197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.030 3.970 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.072 0.928 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.554 6.554 14 N -0.731 5.731 15 C 0.148 3.852 16 H 0.092 0.908 17 C 0.063 3.937 18 O -0.567 6.567 19 C -0.111 4.111 20 C -0.092 4.092 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.120 4.120 25 H 0.091 0.909 26 H 0.029 0.971 27 H 0.012 0.988 28 H 0.260 0.740 29 H 0.398 0.602 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.372 0.628 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 2.367 -17.022 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.309 3.691 13 O -0.430 6.430 14 N -0.386 5.386 15 C 0.042 3.958 16 H 0.110 0.890 17 C -0.016 4.016 18 O -0.371 6.371 19 C -0.149 4.149 20 C -0.111 4.111 21 C -0.154 4.154 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.157 4.157 25 H 0.110 0.890 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.235 0.765 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.218 0.782 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.301 2.329 -16.664 16.876 hybrid contribution -0.256 -0.716 0.653 1.002 sum 1.045 1.613 -16.010 16.125 Atomic orbital electron populations 1.21715 0.96619 0.99659 1.00826 1.18844 0.94062 0.96759 0.89473 0.93166 1.21110 1.30840 1.12729 0.89081 0.90947 1.24945 0.95185 0.95089 0.99039 1.69866 1.37176 1.23094 1.23509 0.86534 0.79247 0.79711 0.81779 1.20257 1.21423 1.20277 1.21946 0.78256 0.84212 0.84698 1.90509 1.38494 1.27110 1.86921 1.46487 1.54738 1.32477 1.04906 1.20906 0.96938 0.92013 0.85959 0.88963 1.22694 0.84212 0.96354 0.98305 1.86476 1.22544 1.37526 1.90596 1.21861 0.99850 0.96308 0.96912 1.21798 0.98795 0.95489 0.94976 1.22569 1.00728 0.93760 0.98303 1.22539 1.01100 0.97638 0.95293 1.22348 1.00985 0.96580 0.96242 1.22210 1.00912 0.94987 0.97618 0.89008 0.95215 0.96895 0.92995 0.76545 0.93797 0.92966 0.78166 0.91384 0.90611 0.91217 0.91513 0.90927 0.91810 0.91645 0.92260 0.91834 0.92266 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.87 37.16 0.33 -2.75 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.33 8.37 -34.44 -0.29 -14.62 16 5 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 C 0.52 11.85 7.11 -10.98 -0.08 11.77 16 13 O -0.55 -14.35 15.12 5.56 0.08 -14.26 16 14 N -0.73 -12.90 3.25 -53.81 -0.17 -13.07 16 15 C 0.15 2.21 2.37 -67.94 -0.16 2.05 16 16 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 17 C 0.06 0.88 6.85 37.16 0.25 1.14 16 18 O -0.57 -7.38 12.83 -35.23 -0.45 -7.83 16 19 C -0.11 -1.34 3.79 -26.73 -0.10 -1.44 16 20 C -0.09 -1.10 2.93 -89.50 -0.26 -1.36 16 21 C -0.12 -1.53 4.63 -25.07 -0.12 -1.65 16 22 C -0.13 -1.48 6.91 -24.74 -0.17 -1.65 16 23 C -0.12 -1.24 6.83 -25.07 -0.17 -1.42 16 24 C -0.12 -1.21 6.46 -25.61 -0.17 -1.37 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.01 0.25 7.56 -51.93 -0.39 -0.14 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.40 6.59 5.68 -40.82 -0.23 6.36 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.37 3.27 9.12 45.56 0.42 3.69 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.95 7.59 -51.93 -0.39 0.56 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.89 5.93 -51.93 -0.31 0.58 16 37 H 0.07 1.14 7.82 -51.93 -0.41 0.73 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -31.50 336.07 -7.71 -39.21 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.56 Total: 7.94 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.27 Total: -9.26 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.45 Total: -37.92 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.37 Total: -22.09 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.50 -7.71 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448257062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.797 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds