Wall clock time and date at job start Mon Mar 30 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 H 1.09007 * 109.46916 * 325.00088 * 15 14 12 17 17 C 1.53002 * 109.47001 * 84.99506 * 15 14 12 18 18 O 1.42904 * 109.46730 * 65.00853 * 17 15 14 19 19 C 1.52992 * 109.47445 * 204.99941 * 15 14 12 20 20 C 1.53004 * 109.47157 * 64.99853 * 19 15 14 21 21 C 1.54269 * 110.03047 * 292.16942 * 20 19 15 22 22 C 1.54895 * 104.18968 * 217.10335 * 21 20 19 23 23 C 1.54886 * 102.75116 * 37.94527 * 22 21 20 24 24 C 1.53871 * 110.03294 * 175.00048 * 20 19 15 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 30 30 H 1.09000 * 109.46800 * 184.99981 * 17 15 14 31 31 H 1.08998 * 109.47706 * 305.00251 * 17 15 14 32 32 H 0.96701 * 113.99613 * 180.02562 * 18 17 15 33 33 H 1.09002 * 109.47437 * 184.99634 * 19 15 14 34 34 H 1.09001 * 109.47477 * 304.99815 * 19 15 14 35 35 H 1.08999 * 110.01579 * 53.61201 * 20 19 15 36 36 H 1.08993 * 110.48778 * 335.77816 * 21 20 19 37 37 H 1.08997 * 110.48576 * 98.42630 * 21 20 19 38 38 H 1.09002 * 110.75732 * 279.62269 * 22 21 20 39 39 H 1.09003 * 110.91127 * 156.32927 * 22 21 20 40 40 H 1.08999 * 110.48311 * 203.37895 * 23 22 21 41 41 H 1.08996 * 110.48662 * 80.73327 * 23 22 21 42 42 H 1.09003 * 110.03577 * 238.57054 * 24 20 19 43 43 H 1.08995 * 110.03219 * 359.95120 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 1 3.1938 -1.3332 -3.4616 17 6 1.2501 -2.0943 -3.9944 18 8 -0.0295 -1.5707 -4.3558 19 6 2.2462 0.0424 -4.8221 20 6 3.2834 1.1288 -4.5308 21 6 2.8051 2.0166 -3.3633 22 6 3.2744 3.4406 -3.7521 23 6 3.0453 3.4698 -5.2837 24 6 3.4361 2.0527 -5.7517 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 1.1487 0.5386 -2.5436 30 1 1.6594 -2.6623 -4.8299 31 1 1.1441 -2.7474 -3.1282 32 1 -0.6805 -2.2475 -4.5863 33 1 2.5238 -0.4904 -5.7316 34 1 1.2666 0.5015 -4.9546 35 1 4.2426 0.6728 -4.2854 36 1 1.7190 1.9828 -3.2785 37 1 3.2716 1.7028 -2.4295 38 1 4.3299 3.5772 -3.5167 39 1 2.6683 4.1989 -3.2564 40 1 3.6870 4.2165 -5.7512 41 1 1.9979 3.6706 -5.5089 42 1 4.4695 2.0458 -6.0984 43 1 2.7720 1.7266 -6.5520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001448257062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:32 Heat of formation + Delta-G solvation = -136.056919 kcal Electronic energy + Delta-G solvation = -21964.357700 eV Core-core repulsion = 18814.442671 eV Total energy + Delta-G solvation = -3149.915029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01089 -39.26948 -37.85017 -35.77960 -35.50466 -33.05699 -31.74575 -29.54877 -29.40937 -27.19527 -25.68272 -24.66323 -22.05154 -21.75828 -20.93884 -20.24793 -18.48294 -18.25973 -17.69008 -17.14938 -16.57492 -16.29693 -15.94451 -15.78466 -15.10195 -14.89839 -14.49719 -14.30217 -14.29912 -13.99212 -13.57218 -13.40830 -12.96196 -12.78213 -12.70101 -12.59812 -12.30988 -12.18912 -11.99764 -11.91231 -11.85609 -11.62437 -11.48202 -11.41568 -11.18140 -11.03789 -10.90772 -10.57183 -10.22946 -9.77777 -8.14055 -6.24523 1.40303 1.42042 1.50616 1.99493 2.37616 2.57750 3.15149 3.45288 3.61296 3.79003 3.79216 4.09177 4.21179 4.38531 4.40667 4.51863 4.58697 4.62643 4.68555 4.74135 4.74916 4.80846 4.89705 4.94853 4.98501 5.02072 5.05070 5.12578 5.17222 5.26904 5.32428 5.40199 5.50346 5.53802 5.59191 5.71525 5.79666 5.95381 6.22783 6.77394 6.89794 6.90713 7.41344 7.61210 8.91672 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.005461 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.974531 B = 5125.865208 C = 5900.206197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.025 3.975 3 H 0.036 0.964 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.591 6.591 14 N -0.709 5.709 15 C 0.139 3.861 16 H 0.076 0.924 17 C 0.071 3.929 18 O -0.575 6.575 19 C -0.098 4.098 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.114 4.114 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.045 0.955 28 H 0.264 0.736 29 H 0.405 0.595 30 H 0.078 0.922 31 H 0.020 0.980 32 H 0.393 0.607 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.106 2.755 -18.992 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.004 3.996 3 H 0.054 0.946 4 C -0.566 4.566 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.472 6.472 14 N -0.363 5.363 15 C 0.035 3.965 16 H 0.094 0.906 17 C -0.008 4.008 18 O -0.383 6.383 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.158 4.158 22 C -0.167 4.167 23 C -0.157 4.157 24 C -0.151 4.151 25 H 0.089 0.911 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.096 0.904 31 H 0.038 0.962 32 H 0.242 0.758 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.816 2.738 -18.679 18.896 hybrid contribution -0.132 -0.807 1.232 1.478 sum 0.684 1.931 -17.447 17.567 Atomic orbital electron populations 1.21511 0.95379 0.99112 1.01326 1.18769 0.95039 0.95786 0.90030 0.94571 1.21254 1.31534 1.12689 0.91142 0.93376 1.25612 0.95222 0.95766 1.01437 1.69949 1.37237 1.23587 1.24302 0.85656 0.78640 0.78733 0.78856 1.20209 1.19898 1.20154 1.21440 0.78120 0.83635 0.85711 1.90483 1.40356 1.28713 1.87600 1.46240 1.53497 1.32142 1.04397 1.21185 0.96485 0.93263 0.85608 0.90618 1.22506 0.84728 0.95232 0.98355 1.86417 1.22606 1.38723 1.90509 1.21795 0.99978 0.95570 0.96181 1.21792 0.98161 0.95672 0.95423 1.22543 1.00245 0.95490 0.97479 1.22544 1.00856 0.96356 0.96945 1.22337 1.01739 0.97032 0.94552 1.22176 1.01909 0.94267 0.96777 0.91136 0.96107 0.93613 0.92635 0.75691 0.90435 0.96175 0.75831 0.88769 0.90329 0.92341 0.91733 0.94369 0.92097 0.91660 0.90847 0.91221 0.91411 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.87 71.98 0.64 -4.87 16 2 C 0.02 1.30 2.64 -12.29 -0.03 1.26 16 3 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.53 -31.31 8.37 25.60 0.21 -31.10 16 5 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 6 C 0.02 1.07 5.30 84.66 0.45 1.51 16 7 N -0.91 -52.25 11.32 21.45 0.24 -52.01 16 8 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.52 24.56 7.11 87.66 0.62 25.18 16 13 O -0.59 -31.87 15.12 -3.04 -0.05 -31.92 16 14 N -0.71 -25.11 3.25 -442.54 -1.44 -26.55 16 15 C 0.14 4.06 2.37 44.99 0.11 4.16 16 16 H 0.08 2.49 7.58 -2.38 -0.02 2.47 16 17 C 0.07 1.86 6.85 71.98 0.49 2.35 16 18 O -0.58 -13.48 12.83 -148.98 -1.91 -15.39 16 19 C -0.10 -2.10 3.79 30.59 0.12 -1.99 16 20 C -0.09 -2.05 2.93 -10.07 -0.03 -2.08 16 21 C -0.12 -3.14 4.63 31.67 0.15 -2.99 16 22 C -0.13 -2.87 6.91 31.89 0.22 -2.65 16 23 C -0.12 -2.07 6.83 31.67 0.22 -1.86 16 24 C -0.11 -1.96 6.46 31.32 0.20 -1.75 16 25 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.04 1.82 7.56 -2.38 -0.02 1.80 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.41 13.21 5.68 -92.70 -0.53 12.68 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.39 5.80 9.12 -74.06 -0.68 5.13 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.72 7.59 -2.39 -0.02 1.70 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.68 5.93 -2.39 -0.01 1.67 16 37 H 0.04 1.24 7.82 -2.39 -0.02 1.22 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.14 7.67 -2.39 -0.02 1.12 16 Total: -1.00 -69.30 336.07 2.03 -67.27 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.20 Total: 25.64 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 3.36 Total: -14.81 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.19 Total: -78.56 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.96 Total: -47.31 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.30 2.03 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448257062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.788 kcal (2) G-P(sol) polarization free energy of solvation -69.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds