Wall clock time and date at job start Mon Mar 30 2020 00:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47109 * 2 1 4 4 C 1.50701 * 109.47522 * 120.00463 * 2 1 3 5 5 H 1.08001 * 120.00095 * 119.99325 * 4 2 1 6 6 C 1.37881 * 119.99653 * 300.00352 * 4 2 1 7 7 N 1.31515 * 119.99450 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00117 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.46823 * 90.00453 * 8 6 4 10 10 H 1.48500 * 109.47048 * 210.00346 * 8 6 4 11 11 H 1.48496 * 109.47226 * 330.00515 * 8 6 4 12 12 C 1.50700 * 109.46925 * 240.00298 * 2 1 3 13 13 O 1.21281 * 119.99929 * 239.99504 * 12 2 1 14 14 N 1.34781 * 120.00194 * 60.00003 * 12 2 1 15 15 C 1.46492 * 120.00361 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.47095 * 34.99805 * 15 14 12 17 17 C 1.53003 * 109.47159 * 275.00067 * 15 14 12 18 18 O 1.42905 * 109.46914 * 294.99969 * 17 15 14 19 19 C 1.52999 * 109.47279 * 154.99982 * 15 14 12 20 20 C 1.52999 * 109.47038 * 294.99862 * 19 15 14 21 21 C 1.54267 * 110.03137 * 292.16780 * 20 19 15 22 22 C 1.54891 * 104.19324 * 217.10706 * 21 20 19 23 23 C 1.54888 * 102.75120 * 37.94011 * 22 21 20 24 24 C 1.53876 * 110.03160 * 175.00197 * 20 19 15 25 25 H 1.09003 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47117 * 299.99192 * 1 2 3 27 27 H 1.08992 * 109.47255 * 59.99874 * 1 2 3 28 28 H 0.97003 * 119.99483 * 179.97438 * 7 6 4 29 29 H 0.97004 * 119.99592 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47339 * 54.99312 * 17 15 14 31 31 H 1.08999 * 109.47365 * 175.00113 * 17 15 14 32 32 H 0.96702 * 114.00038 * 179.97438 * 18 17 15 33 33 H 1.08998 * 109.47143 * 174.99727 * 19 15 14 34 34 H 1.08998 * 109.46916 * 55.00171 * 19 15 14 35 35 H 1.08998 * 110.05499 * 53.58535 * 20 19 15 36 36 H 1.09004 * 110.48597 * 335.78345 * 21 20 19 37 37 H 1.08994 * 110.48679 * 98.42871 * 21 20 19 38 38 H 1.09005 * 110.75269 * 279.62515 * 22 21 20 39 39 H 1.09004 * 110.91555 * 156.33330 * 22 21 20 40 40 H 1.09000 * 110.48622 * 203.37816 * 23 22 21 41 41 H 1.08999 * 110.48451 * 80.73628 * 23 22 21 42 42 H 1.08998 * 110.02768 * 238.57174 * 24 20 19 43 43 H 1.08999 * 110.02894 * 359.94859 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1374 -0.8599 3.5564 8 14 0.6258 1.2796 2.6542 9 1 -0.8020 0.8741 2.6995 10 1 0.9772 1.9951 3.9072 11 1 0.8489 2.1771 1.4924 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1954 -0.9400 -3.6508 16 1 2.2325 -2.0128 -3.4616 17 6 3.5978 -0.4340 -3.9944 18 8 3.5307 0.9470 -4.3556 19 6 1.2514 -0.6610 -4.8221 20 6 -0.1186 -1.2768 -4.5308 21 6 -0.0177 -2.8162 -4.5354 22 6 -1.3471 -3.2820 -5.1795 23 6 -1.5828 -2.2207 -6.2827 24 6 -1.1137 -0.8982 -5.6418 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.9033 -0.5283 4.4375 29 1 1.1487 0.5387 -2.5436 30 1 4.2489 -0.5516 -3.1282 31 1 3.9971 -1.0090 -4.8299 32 1 4.3858 1.3353 -4.5862 33 1 1.6612 -1.1002 -5.7316 34 1 1.1450 0.4157 -4.9545 35 1 -0.4869 -0.9296 -3.5655 36 1 0.8317 -3.1411 -5.1363 37 1 0.0665 -3.1960 -3.5172 38 1 -2.1563 -3.2665 -4.4493 39 1 -1.2412 -4.2755 -5.6154 40 1 -2.6407 -2.1660 -6.5396 41 1 -0.9861 -2.4494 -7.1657 42 1 -1.9648 -0.3673 -5.2156 43 1 -0.6208 -0.2750 -6.3880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001448257085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:34 Heat of formation + Delta-G solvation = -138.353632 kcal Electronic energy + Delta-G solvation = -21756.767362 eV Core-core repulsion = 18606.752740 eV Total energy + Delta-G solvation = -3150.014622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98599 -39.34685 -37.88962 -35.80102 -35.59962 -33.50755 -32.06068 -29.69904 -29.31972 -27.11016 -25.76924 -24.88701 -22.17509 -21.42485 -20.97926 -20.38785 -18.80543 -18.38492 -17.84083 -17.03227 -16.65552 -16.39713 -16.10941 -15.64929 -15.30413 -15.05408 -14.79267 -14.42348 -14.25010 -14.15107 -13.95916 -13.41264 -13.14402 -12.99347 -12.74870 -12.63492 -12.47376 -12.13712 -11.91156 -11.86439 -11.54382 -11.49019 -11.44191 -11.42144 -11.22793 -11.20705 -10.91359 -10.76997 -10.38393 -9.89985 -8.27300 -6.34494 1.32324 1.38915 1.49997 1.90584 2.33703 2.41554 3.06411 3.43686 3.60502 3.78024 3.81824 4.03751 4.18061 4.21448 4.39280 4.42863 4.47055 4.59496 4.60402 4.62612 4.68568 4.72439 4.78104 4.82981 4.87353 4.93941 4.98862 5.02659 5.12467 5.19859 5.28311 5.31159 5.41947 5.44223 5.53368 5.53457 5.60521 5.71119 6.27729 6.70488 6.87758 6.88923 7.27092 7.55137 8.90489 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019453 B = 0.005311 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.054620 B = 5271.295825 C = 5884.879349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.010 4.010 3 H 0.064 0.936 4 C -0.518 4.518 5 H 0.030 0.970 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.959 3.041 9 H -0.261 1.261 10 H -0.299 1.299 11 H -0.234 1.234 12 C 0.529 3.471 13 O -0.586 6.586 14 N -0.709 5.709 15 C 0.141 3.859 16 H 0.076 0.924 17 C 0.069 3.931 18 O -0.574 6.574 19 C -0.096 4.096 20 C -0.095 4.095 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.116 4.116 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.267 0.733 29 H 0.409 0.591 30 H 0.019 0.981 31 H 0.076 0.924 32 H 0.393 0.607 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 4.317 -23.847 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 H 0.081 0.919 4 C -0.557 4.557 5 H 0.048 0.952 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.784 3.216 9 H -0.186 1.186 10 H -0.227 1.227 11 H -0.157 1.157 12 C 0.317 3.683 13 O -0.465 6.465 14 N -0.361 5.361 15 C 0.037 3.963 16 H 0.094 0.906 17 C -0.010 4.010 18 O -0.381 6.381 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.162 4.162 22 C -0.164 4.164 23 C -0.157 4.157 24 C -0.154 4.154 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.245 0.755 30 H 0.037 0.963 31 H 0.094 0.906 32 H 0.242 0.758 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.945 3.508 -23.499 24.754 hybrid contribution 0.510 0.376 1.019 1.200 sum -6.435 3.884 -22.480 23.703 Atomic orbital electron populations 1.21990 0.94581 1.01508 1.01350 1.19250 0.95348 0.97280 0.91261 0.91868 1.21096 1.31489 1.12746 0.90336 0.95204 1.26018 0.97470 1.00653 0.94845 1.70080 1.47747 1.42795 0.98693 0.85713 0.78837 0.79129 0.77936 1.18633 1.22654 1.15674 1.20969 0.78481 0.83501 0.85361 1.90552 1.39887 1.28702 1.87385 1.45917 1.53823 1.32158 1.04224 1.21165 0.93081 0.96605 0.85496 0.90615 1.22516 0.96850 0.83337 0.98324 1.86398 1.37076 1.24149 1.90511 1.21785 0.93273 1.02275 0.96002 1.21807 0.95355 0.94998 0.99221 1.22459 0.98550 0.95554 0.99638 1.22501 0.96686 0.99128 0.98040 1.22339 1.01377 0.94223 0.97758 1.22184 0.98205 0.97776 0.97203 0.93570 0.93706 0.89902 0.92426 0.75477 0.96259 0.90630 0.75764 0.89171 0.89989 0.92176 0.91076 0.94373 0.92294 0.91176 0.91098 0.90944 0.91786 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 8.57 71.98 0.62 -4.78 16 2 C -0.01 -0.46 2.23 -12.29 -0.03 -0.49 16 3 H 0.06 2.83 7.20 -2.39 -0.02 2.81 16 4 C -0.52 -31.64 8.96 25.60 0.23 -31.42 16 5 H 0.03 2.14 7.00 -2.91 -0.02 2.12 16 6 C 0.01 0.38 5.45 84.66 0.46 0.84 16 7 N -0.95 -62.09 13.96 21.45 0.30 -61.79 16 8 Si 0.96 44.12 24.37 68.60 1.67 45.79 16 9 H -0.26 -11.21 6.87 99.48 0.68 -10.52 16 10 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 11 H -0.23 -9.42 6.53 99.48 0.65 -8.77 16 12 C 0.53 23.55 7.11 87.66 0.62 24.17 16 13 O -0.59 -31.72 15.12 -3.03 -0.05 -31.77 16 14 N -0.71 -22.73 4.29 -442.54 -1.90 -24.63 16 15 C 0.14 3.84 2.29 44.99 0.10 3.94 16 16 H 0.08 2.41 6.80 -2.39 -0.02 2.40 16 17 C 0.07 1.72 6.85 71.98 0.49 2.21 16 18 O -0.57 -12.34 12.83 -148.98 -1.91 -14.25 16 19 C -0.10 -1.86 3.60 30.59 0.11 -1.75 16 20 C -0.10 -1.91 2.87 -10.07 -0.03 -1.94 16 21 C -0.12 -2.70 5.46 31.67 0.17 -2.53 16 22 C -0.13 -2.27 6.91 31.89 0.22 -2.05 16 23 C -0.12 -1.74 6.83 31.67 0.22 -1.53 16 24 C -0.12 -1.81 6.46 31.32 0.20 -1.61 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 1.80 3.27 -2.38 -0.01 1.79 16 27 H 0.08 2.43 7.56 -2.39 -0.02 2.41 16 28 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 29 H 0.41 10.99 8.02 -92.70 -0.74 10.25 16 30 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.39 5.17 9.12 -74.06 -0.68 4.50 16 33 H 0.09 1.47 8.00 -2.39 -0.02 1.45 16 34 H 0.08 1.54 7.73 -2.39 -0.02 1.52 16 35 H 0.06 1.41 7.62 -2.39 -0.02 1.39 16 36 H 0.07 1.43 7.76 -2.38 -0.02 1.41 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.02 7.67 -2.39 -0.02 1.00 16 Total: -1.00 -78.67 333.99 1.01 -77.66 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.50 Total: 25.90 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 3.39 Total: -16.91 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -1.60 Total: -86.41 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -1.96 Total: -46.02 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.67 Total: 45.79 kcal Total: -78.67 1.01 -77.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448257085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.697 kcal (2) G-P(sol) polarization free energy of solvation -78.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds