Wall clock time and date at job start Mon Mar 30 2020 00:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47308 * 2 1 4 4 C 1.50699 * 109.47107 * 239.99791 * 2 1 3 5 5 H 1.08004 * 119.99705 * 240.00259 * 4 2 1 6 6 C 1.37874 * 120.00174 * 59.99871 * 4 2 1 7 7 N 1.31515 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00062 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46859 * 60.00097 * 8 6 4 10 10 H 1.48499 * 109.47073 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47112 * 300.00062 * 8 6 4 12 12 C 1.50705 * 109.47218 * 119.99881 * 2 1 3 13 13 O 1.21274 * 120.00041 * 120.00056 * 12 2 1 14 14 N 1.34776 * 119.99786 * 299.99770 * 12 2 1 15 15 C 1.46504 * 120.00219 * 180.02562 * 14 12 2 16 16 H 1.09008 * 109.46847 * 35.00024 * 15 14 12 17 17 C 1.52994 * 109.47145 * 275.00364 * 15 14 12 18 18 O 1.42907 * 109.47234 * 294.99711 * 17 15 14 19 19 C 1.52997 * 109.47349 * 154.99866 * 15 14 12 20 20 C 1.53000 * 109.47060 * 295.00344 * 19 15 14 21 21 C 1.54264 * 110.03002 * 292.16491 * 20 19 15 22 22 C 1.54897 * 104.19675 * 217.10856 * 21 20 19 23 23 C 1.54887 * 102.74744 * 37.94098 * 22 21 20 24 24 C 1.53874 * 110.03037 * 175.00332 * 20 19 15 25 25 H 1.09000 * 109.46972 * 60.00029 * 1 2 3 26 26 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46824 * 299.99923 * 1 2 3 28 28 H 0.96994 * 120.00208 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00290 * 359.97438 * 14 12 2 30 30 H 1.09005 * 109.47364 * 54.99229 * 17 15 14 31 31 H 1.08996 * 109.47643 * 174.99473 * 17 15 14 32 32 H 0.96699 * 114.00491 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.47153 * 175.00025 * 19 15 14 34 34 H 1.09001 * 109.46832 * 55.00216 * 19 15 14 35 35 H 1.08994 * 110.02013 * 53.60972 * 20 19 15 36 36 H 1.08998 * 110.49133 * 335.78593 * 21 20 19 37 37 H 1.09000 * 110.48973 * 98.43075 * 21 20 19 38 38 H 1.08998 * 110.75483 * 279.63133 * 22 21 20 39 39 H 1.08991 * 110.91636 * 156.33038 * 22 21 20 40 40 H 1.09001 * 110.48698 * 203.37806 * 23 22 21 41 41 H 1.09006 * 110.48488 * 80.73848 * 23 22 21 42 42 H 1.09000 * 110.03070 * 238.57126 * 24 20 19 43 43 H 1.09006 * 110.03299 * 359.94372 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.8257 -2.5204 -4.0075 10 1 1.8269 -0.4202 -5.2204 11 1 3.8062 -1.1212 -4.0081 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7068 -0.2499 2.4546 15 6 2.1955 -0.9401 3.6508 16 1 3.1950 -1.3319 3.4614 17 6 1.2521 -2.0942 3.9950 18 8 -0.0279 -1.5716 4.3566 19 6 2.2469 0.0433 4.8219 20 6 3.2831 1.1304 4.5299 21 6 4.7013 0.5233 4.5341 22 6 5.5830 1.6222 5.1776 23 6 4.6609 2.1977 6.2810 24 6 3.2575 2.1949 5.6407 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7095 1.1616 -3.4844 29 1 1.1494 0.5391 2.5436 30 1 1.1462 -2.7476 3.1289 31 1 1.6619 -2.6619 4.8303 32 1 -0.6784 -2.2488 4.5875 33 1 2.5251 -0.4891 5.7314 34 1 1.2669 0.5017 4.9545 35 1 3.0770 1.5928 3.5647 36 1 4.7255 -0.3857 5.1351 37 1 5.0311 0.3173 3.5158 38 1 5.8372 2.3904 4.4473 39 1 6.4847 1.1921 5.6133 40 1 4.9612 3.2136 6.5377 41 1 4.6785 1.5591 7.1643 42 1 3.0396 3.1742 5.2144 43 1 2.5060 1.9376 6.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001448257087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:36 Heat of formation + Delta-G solvation = -121.915208 kcal Electronic energy + Delta-G solvation = -21636.294779 eV Core-core repulsion = 18486.992980 eV Total energy + Delta-G solvation = -3149.301798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43631 -38.10067 -36.73243 -34.27855 -33.64996 -31.38458 -30.08864 -28.74296 -28.20874 -25.07178 -24.74279 -22.82126 -21.05461 -20.34559 -19.50372 -19.27018 -17.28601 -16.38905 -16.02899 -15.57788 -15.41060 -14.89477 -14.54047 -14.32108 -13.96179 -13.47525 -13.33726 -13.21084 -12.71894 -12.44647 -12.10011 -11.76442 -11.63424 -11.39649 -11.14411 -11.02308 -10.95157 -10.70127 -10.69197 -10.62861 -10.48411 -10.43104 -10.31721 -10.18120 -9.91650 -9.82413 -8.91881 -8.52439 -8.32735 -8.24023 -5.97799 -4.00719 3.38901 3.41194 3.46663 3.80743 3.99766 4.47668 4.52269 4.53923 4.63704 4.70571 5.04796 5.24609 5.34975 5.36596 5.44809 5.47819 5.60171 5.63628 5.65035 5.70060 5.80614 5.85697 5.88429 5.96548 6.05070 6.18523 6.19440 6.28464 6.32400 6.50007 6.53159 6.71595 6.92545 7.01604 7.23170 7.55604 7.72498 7.82733 8.05760 8.24167 8.55825 9.07773 9.34378 9.64553 11.09753 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.004876 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.326667 B = 5740.518148 C = 6375.930091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.029 3.971 3 H 0.050 0.950 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.552 6.552 14 N -0.731 5.731 15 C 0.147 3.853 16 H 0.094 0.906 17 C 0.063 3.937 18 O -0.567 6.567 19 C -0.110 4.110 20 C -0.094 4.094 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.120 4.120 25 H 0.091 0.909 26 H 0.029 0.971 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.397 0.603 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.372 0.628 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 1.207 17.943 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.429 6.429 14 N -0.384 5.384 15 C 0.042 3.958 16 H 0.112 0.888 17 C -0.016 4.016 18 O -0.371 6.371 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.158 4.158 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.158 4.158 25 H 0.110 0.890 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.231 0.769 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.218 0.782 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.790 1.169 17.579 17.837 hybrid contribution -0.297 -0.672 -0.675 0.998 sum 2.493 0.497 16.904 17.094 Atomic orbital electron populations 1.21711 0.96561 0.99665 1.00859 1.18848 0.94117 0.96752 0.89465 0.93196 1.21109 1.30853 1.12728 0.89074 0.90934 1.24947 0.95180 0.95089 0.99050 1.69867 1.37180 1.23101 1.23518 0.86528 0.79247 0.79707 0.81760 1.20268 1.21416 1.20249 1.21943 0.78187 0.84223 0.84634 1.90507 1.38414 1.27105 1.86880 1.46236 1.54846 1.32384 1.04984 1.20918 0.96964 0.92064 0.85902 0.88804 1.22697 0.84219 0.96389 0.98289 1.86475 1.22546 1.37525 1.90580 1.21855 0.99605 0.96323 0.97016 1.21813 0.94790 0.95450 0.99246 1.22456 0.94515 0.97836 1.01043 1.22494 0.97703 0.98349 0.97772 1.22347 0.95313 1.00434 0.98040 1.22216 0.96968 0.98946 0.97679 0.89024 0.95215 0.96817 0.92991 0.76923 0.92985 0.93808 0.78166 0.91308 0.90739 0.90424 0.91754 0.91443 0.91597 0.91967 0.92125 0.91976 0.91974 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.87 37.16 0.33 -2.75 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.07 2.20 6.75 -52.48 -0.35 1.84 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.55 11.32 55.43 0.63 -24.93 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.52 11.94 7.11 -10.98 -0.08 11.87 16 13 O -0.55 -14.33 15.12 5.56 0.08 -14.25 16 14 N -0.73 -13.01 4.29 -53.80 -0.23 -13.24 16 15 C 0.15 2.21 2.29 -67.93 -0.16 2.05 16 16 H 0.09 1.54 6.81 -51.92 -0.35 1.19 16 17 C 0.06 0.88 6.85 37.15 0.25 1.14 16 18 O -0.57 -7.40 12.83 -35.23 -0.45 -7.85 16 19 C -0.11 -1.32 3.60 -26.73 -0.10 -1.42 16 20 C -0.09 -1.12 2.87 -89.50 -0.26 -1.38 16 21 C -0.12 -1.43 5.46 -25.07 -0.14 -1.57 16 22 C -0.13 -1.29 6.91 -24.74 -0.17 -1.46 16 23 C -0.12 -1.15 6.83 -25.07 -0.17 -1.33 16 24 C -0.12 -1.22 6.46 -25.61 -0.17 -1.39 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.01 0.27 7.56 -51.93 -0.39 -0.13 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.40 6.56 8.02 -40.82 -0.33 6.23 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.37 3.28 9.12 45.56 0.42 3.70 16 33 H 0.07 0.74 8.00 -51.93 -0.42 0.33 16 34 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16 35 H 0.08 1.06 7.62 -51.93 -0.40 0.67 16 36 H 0.06 0.72 7.76 -51.93 -0.40 0.31 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -31.63 340.81 -7.84 -39.47 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.70 Total: 7.43 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.28 Total: -8.86 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.40 Total: -38.17 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.37 Total: -22.10 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.63 -7.84 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448257087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.446 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds