Wall clock time and date at job start Mon Mar 30 2020 00:43:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08997 * 109.47308 * 2 1
4 4 C 1.50699 * 109.47107 * 239.99791 * 2 1 3
5 5 H 1.08004 * 119.99705 * 240.00259 * 4 2 1
6 6 C 1.37874 * 120.00174 * 59.99871 * 4 2 1
7 7 N 1.31515 * 119.99978 * 0.02562 * 6 4 2
8 8 Si 1.86802 * 120.00062 * 180.02562 * 6 4 2
9 9 H 1.48499 * 109.46859 * 60.00097 * 8 6 4
10 10 H 1.48499 * 109.47073 * 180.02562 * 8 6 4
11 11 H 1.48493 * 109.47112 * 300.00062 * 8 6 4
12 12 C 1.50705 * 109.47218 * 119.99881 * 2 1 3
13 13 O 1.21274 * 120.00041 * 120.00056 * 12 2 1
14 14 N 1.34776 * 119.99786 * 299.99770 * 12 2 1
15 15 C 1.46504 * 120.00219 * 180.02562 * 14 12 2
16 16 H 1.09008 * 109.46847 * 35.00024 * 15 14 12
17 17 C 1.52994 * 109.47145 * 275.00364 * 15 14 12
18 18 O 1.42907 * 109.47234 * 294.99711 * 17 15 14
19 19 C 1.52997 * 109.47349 * 154.99866 * 15 14 12
20 20 C 1.53000 * 109.47060 * 295.00344 * 19 15 14
21 21 C 1.54264 * 110.03002 * 292.16491 * 20 19 15
22 22 C 1.54897 * 104.19675 * 217.10856 * 21 20 19
23 23 C 1.54887 * 102.74744 * 37.94098 * 22 21 20
24 24 C 1.53874 * 110.03037 * 175.00332 * 20 19 15
25 25 H 1.09000 * 109.46972 * 60.00029 * 1 2 3
26 26 H 1.09001 * 109.47090 * 180.02562 * 1 2 3
27 27 H 1.09000 * 109.46824 * 299.99923 * 1 2 3
28 28 H 0.96994 * 120.00208 * 179.97438 * 7 6 4
29 29 H 0.97006 * 120.00290 * 359.97438 * 14 12 2
30 30 H 1.09005 * 109.47364 * 54.99229 * 17 15 14
31 31 H 1.08996 * 109.47643 * 174.99473 * 17 15 14
32 32 H 0.96699 * 114.00491 * 179.97438 * 18 17 15
33 33 H 1.09002 * 109.47153 * 175.00025 * 19 15 14
34 34 H 1.09001 * 109.46832 * 55.00216 * 19 15 14
35 35 H 1.08994 * 110.02013 * 53.60972 * 20 19 15
36 36 H 1.08998 * 110.49133 * 335.78593 * 21 20 19
37 37 H 1.09000 * 110.48973 * 98.43075 * 21 20 19
38 38 H 1.08998 * 110.75483 * 279.63133 * 22 21 20
39 39 H 1.08991 * 110.91636 * 156.33038 * 22 21 20
40 40 H 1.09001 * 110.48698 * 203.37806 * 23 22 21
41 41 H 1.09006 * 110.48488 * 80.73848 * 23 22 21
42 42 H 1.09000 * 110.03070 * 238.57126 * 24 20 19
43 43 H 1.09006 * 110.03299 * 359.94372 * 24 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5886 -1.1312
6 6 1.6992 -0.2395 -2.4827
7 7 0.9435 0.8301 -2.6034
8 14 2.3213 -1.1206 -4.0079
9 1 1.8257 -2.5204 -4.0075
10 1 1.8269 -0.4202 -5.2204
11 1 3.8062 -1.1212 -4.0081
12 6 2.0323 -0.7104 1.2305
13 8 2.7296 -1.6964 1.1193
14 7 1.7068 -0.2499 2.4546
15 6 2.1955 -0.9401 3.6508
16 1 3.1950 -1.3319 3.4614
17 6 1.2521 -2.0942 3.9950
18 8 -0.0279 -1.5716 4.3566
19 6 2.2469 0.0433 4.8219
20 6 3.2831 1.1304 4.5299
21 6 4.7013 0.5233 4.5341
22 6 5.5830 1.6222 5.1776
23 6 4.6609 2.1977 6.2810
24 6 3.2575 2.1949 5.6407
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 0.7095 1.1616 -3.4844
29 1 1.1494 0.5391 2.5436
30 1 1.1462 -2.7476 3.1289
31 1 1.6619 -2.6619 4.8303
32 1 -0.6784 -2.2488 4.5875
33 1 2.5251 -0.4891 5.7314
34 1 1.2669 0.5017 4.9545
35 1 3.0770 1.5928 3.5647
36 1 4.7255 -0.3857 5.1351
37 1 5.0311 0.3173 3.5158
38 1 5.8372 2.3904 4.4473
39 1 6.4847 1.1921 5.6133
40 1 4.9612 3.2136 6.5377
41 1 4.6785 1.5591 7.1643
42 1 3.0396 3.1742 5.2144
43 1 2.5060 1.9376 6.3872
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001448257087.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:43:36
Heat of formation + Delta-G solvation = -121.915208 kcal
Electronic energy + Delta-G solvation = -21636.294779 eV
Core-core repulsion = 18486.992980 eV
Total energy + Delta-G solvation = -3149.301798 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.43631 -38.10067 -36.73243 -34.27855 -33.64996 -31.38458 -30.08864 -28.74296
-28.20874 -25.07178 -24.74279 -22.82126 -21.05461 -20.34559 -19.50372 -19.27018
-17.28601 -16.38905 -16.02899 -15.57788 -15.41060 -14.89477 -14.54047 -14.32108
-13.96179 -13.47525 -13.33726 -13.21084 -12.71894 -12.44647 -12.10011 -11.76442
-11.63424 -11.39649 -11.14411 -11.02308 -10.95157 -10.70127 -10.69197 -10.62861
-10.48411 -10.43104 -10.31721 -10.18120 -9.91650 -9.82413 -8.91881 -8.52439
-8.32735 -8.24023 -5.97799 -4.00719 3.38901 3.41194 3.46663 3.80743
3.99766 4.47668 4.52269 4.53923 4.63704 4.70571 5.04796 5.24609
5.34975 5.36596 5.44809 5.47819 5.60171 5.63628 5.65035 5.70060
5.80614 5.85697 5.88429 5.96548 6.05070 6.18523 6.19440 6.28464
6.32400 6.50007 6.53159 6.71595 6.92545 7.01604 7.23170 7.55604
7.72498 7.82733 8.05760 8.24167 8.55825 9.07773 9.34378 9.64553
11.09753
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.020178 B = 0.004876 C = 0.004390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1387.326667 B = 5740.518148 C = 6375.930091
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.029 3.971
3 H 0.050 0.950
4 C -0.499 4.499
5 H 0.073 0.927
6 C 0.058 3.942
7 N -0.897 5.897
8 Si 0.900 3.100
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.277 1.277
12 C 0.520 3.480
13 O -0.552 6.552
14 N -0.731 5.731
15 C 0.147 3.853
16 H 0.094 0.906
17 C 0.063 3.937
18 O -0.567 6.567
19 C -0.110 4.110
20 C -0.094 4.094
21 C -0.121 4.121
22 C -0.126 4.126
23 C -0.124 4.124
24 C -0.120 4.120
25 H 0.091 0.909
26 H 0.029 0.971
27 H 0.013 0.987
28 H 0.260 0.740
29 H 0.397 0.603
30 H 0.052 0.948
31 H 0.044 0.956
32 H 0.372 0.628
33 H 0.068 0.932
34 H 0.074 0.926
35 H 0.077 0.923
36 H 0.064 0.936
37 H 0.067 0.933
38 H 0.065 0.935
39 H 0.062 0.938
40 H 0.060 0.940
41 H 0.061 0.939
42 H 0.061 0.939
43 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.046 1.207 17.943 18.100
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.008 3.992
3 H 0.068 0.932
4 C -0.538 4.538
5 H 0.091 0.909
6 C -0.143 4.143
7 N -0.537 5.537
8 Si 0.728 3.272
9 H -0.203 1.203
10 H -0.214 1.214
11 H -0.202 1.202
12 C 0.310 3.690
13 O -0.429 6.429
14 N -0.384 5.384
15 C 0.042 3.958
16 H 0.112 0.888
17 C -0.016 4.016
18 O -0.371 6.371
19 C -0.148 4.148
20 C -0.113 4.113
21 C -0.158 4.158
22 C -0.163 4.163
23 C -0.161 4.161
24 C -0.158 4.158
25 H 0.110 0.890
26 H 0.048 0.952
27 H 0.032 0.968
28 H 0.070 0.930
29 H 0.231 0.769
30 H 0.070 0.930
31 H 0.062 0.938
32 H 0.218 0.782
33 H 0.087 0.913
34 H 0.093 0.907
35 H 0.096 0.904
36 H 0.082 0.918
37 H 0.086 0.914
38 H 0.084 0.916
39 H 0.080 0.920
40 H 0.079 0.921
41 H 0.080 0.920
42 H 0.080 0.920
43 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 2.790 1.169 17.579 17.837
hybrid contribution -0.297 -0.672 -0.675 0.998
sum 2.493 0.497 16.904 17.094
Atomic orbital electron populations
1.21711 0.96561 0.99665 1.00859 1.18848 0.94117 0.96752 0.89465
0.93196 1.21109 1.30853 1.12728 0.89074 0.90934 1.24947 0.95180
0.95089 0.99050 1.69867 1.37180 1.23101 1.23518 0.86528 0.79247
0.79707 0.81760 1.20268 1.21416 1.20249 1.21943 0.78187 0.84223
0.84634 1.90507 1.38414 1.27105 1.86880 1.46236 1.54846 1.32384
1.04984 1.20918 0.96964 0.92064 0.85902 0.88804 1.22697 0.84219
0.96389 0.98289 1.86475 1.22546 1.37525 1.90580 1.21855 0.99605
0.96323 0.97016 1.21813 0.94790 0.95450 0.99246 1.22456 0.94515
0.97836 1.01043 1.22494 0.97703 0.98349 0.97772 1.22347 0.95313
1.00434 0.98040 1.22216 0.96968 0.98946 0.97679 0.89024 0.95215
0.96817 0.92991 0.76923 0.92985 0.93808 0.78166 0.91308 0.90739
0.90424 0.91754 0.91443 0.91597 0.91967 0.92125 0.91976 0.91974
0.91863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.08 8.87 37.16 0.33 -2.75 16
2 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16
3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16
4 C -0.50 -14.37 8.37 -34.44 -0.29 -14.66 16
5 H 0.07 2.20 6.75 -52.48 -0.35 1.84 16
6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16
7 N -0.90 -25.55 11.32 55.43 0.63 -24.93 16
8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16
9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16
12 C 0.52 11.94 7.11 -10.98 -0.08 11.87 16
13 O -0.55 -14.33 15.12 5.56 0.08 -14.25 16
14 N -0.73 -13.01 4.29 -53.80 -0.23 -13.24 16
15 C 0.15 2.21 2.29 -67.93 -0.16 2.05 16
16 H 0.09 1.54 6.81 -51.92 -0.35 1.19 16
17 C 0.06 0.88 6.85 37.15 0.25 1.14 16
18 O -0.57 -7.40 12.83 -35.23 -0.45 -7.85 16
19 C -0.11 -1.32 3.60 -26.73 -0.10 -1.42 16
20 C -0.09 -1.12 2.87 -89.50 -0.26 -1.38 16
21 C -0.12 -1.43 5.46 -25.07 -0.14 -1.57 16
22 C -0.13 -1.29 6.91 -24.74 -0.17 -1.46 16
23 C -0.12 -1.15 6.83 -25.07 -0.17 -1.33 16
24 C -0.12 -1.22 6.46 -25.61 -0.17 -1.39 16
25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16
26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16
27 H 0.01 0.27 7.56 -51.93 -0.39 -0.13 16
28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
29 H 0.40 6.56 8.02 -40.82 -0.33 6.23 16
30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.37 3.28 9.12 45.56 0.42 3.70 16
33 H 0.07 0.74 8.00 -51.93 -0.42 0.33 16
34 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16
35 H 0.08 1.06 7.62 -51.93 -0.40 0.67 16
36 H 0.06 0.72 7.76 -51.93 -0.40 0.31 16
37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
43 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16
LS Contribution 340.81 15.07 5.14 5.14
Total: -1.00 -31.63 340.81 -7.84 -39.47
By element:
Atomic # 1 Polarization: 14.13 SS G_CDS: -6.70 Total: 7.43 kcal
Atomic # 6 Polarization: -7.59 SS G_CDS: -1.28 Total: -8.86 kcal
Atomic # 7 Polarization: -38.57 SS G_CDS: 0.40 Total: -38.17 kcal
Atomic # 8 Polarization: -21.73 SS G_CDS: -0.37 Total: -22.10 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -31.63 -7.84 -39.47 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001448257087.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -82.446 kcal
(2) G-P(sol) polarization free energy of solvation -31.633 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.079 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.915 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds