Wall clock time and date at job start Mon Mar 30 2020 00:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47308 * 2 1 4 4 C 1.50699 * 109.47107 * 239.99791 * 2 1 3 5 5 H 1.08004 * 119.99705 * 240.00259 * 4 2 1 6 6 C 1.37874 * 120.00174 * 59.99871 * 4 2 1 7 7 N 1.31515 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00062 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46859 * 60.00097 * 8 6 4 10 10 H 1.48499 * 109.47073 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47112 * 300.00062 * 8 6 4 12 12 C 1.50705 * 109.47218 * 119.99881 * 2 1 3 13 13 O 1.21274 * 120.00041 * 120.00056 * 12 2 1 14 14 N 1.34776 * 119.99786 * 299.99770 * 12 2 1 15 15 C 1.46504 * 120.00219 * 180.02562 * 14 12 2 16 16 H 1.09008 * 109.46847 * 35.00024 * 15 14 12 17 17 C 1.52994 * 109.47145 * 275.00364 * 15 14 12 18 18 O 1.42907 * 109.47234 * 294.99711 * 17 15 14 19 19 C 1.52997 * 109.47349 * 154.99866 * 15 14 12 20 20 C 1.53000 * 109.47060 * 295.00344 * 19 15 14 21 21 C 1.54264 * 110.03002 * 292.16491 * 20 19 15 22 22 C 1.54897 * 104.19675 * 217.10856 * 21 20 19 23 23 C 1.54887 * 102.74744 * 37.94098 * 22 21 20 24 24 C 1.53874 * 110.03037 * 175.00332 * 20 19 15 25 25 H 1.09000 * 109.46972 * 60.00029 * 1 2 3 26 26 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46824 * 299.99923 * 1 2 3 28 28 H 0.96994 * 120.00208 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00290 * 359.97438 * 14 12 2 30 30 H 1.09005 * 109.47364 * 54.99229 * 17 15 14 31 31 H 1.08996 * 109.47643 * 174.99473 * 17 15 14 32 32 H 0.96699 * 114.00491 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.47153 * 175.00025 * 19 15 14 34 34 H 1.09001 * 109.46832 * 55.00216 * 19 15 14 35 35 H 1.08994 * 110.02013 * 53.60972 * 20 19 15 36 36 H 1.08998 * 110.49133 * 335.78593 * 21 20 19 37 37 H 1.09000 * 110.48973 * 98.43075 * 21 20 19 38 38 H 1.08998 * 110.75483 * 279.63133 * 22 21 20 39 39 H 1.08991 * 110.91636 * 156.33038 * 22 21 20 40 40 H 1.09001 * 110.48698 * 203.37806 * 23 22 21 41 41 H 1.09006 * 110.48488 * 80.73848 * 23 22 21 42 42 H 1.09000 * 110.03070 * 238.57126 * 24 20 19 43 43 H 1.09006 * 110.03299 * 359.94372 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.8257 -2.5204 -4.0075 10 1 1.8269 -0.4202 -5.2204 11 1 3.8062 -1.1212 -4.0081 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7068 -0.2499 2.4546 15 6 2.1955 -0.9401 3.6508 16 1 3.1950 -1.3319 3.4614 17 6 1.2521 -2.0942 3.9950 18 8 -0.0279 -1.5716 4.3566 19 6 2.2469 0.0433 4.8219 20 6 3.2831 1.1304 4.5299 21 6 4.7013 0.5233 4.5341 22 6 5.5830 1.6222 5.1776 23 6 4.6609 2.1977 6.2810 24 6 3.2575 2.1949 5.6407 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7095 1.1616 -3.4844 29 1 1.1494 0.5391 2.5436 30 1 1.1462 -2.7476 3.1289 31 1 1.6619 -2.6619 4.8303 32 1 -0.6784 -2.2488 4.5875 33 1 2.5251 -0.4891 5.7314 34 1 1.2669 0.5017 4.9545 35 1 3.0770 1.5928 3.5647 36 1 4.7255 -0.3857 5.1351 37 1 5.0311 0.3173 3.5158 38 1 5.8372 2.3904 4.4473 39 1 6.4847 1.1921 5.6133 40 1 4.9612 3.2136 6.5377 41 1 4.6785 1.5591 7.1643 42 1 3.0396 3.1742 5.2144 43 1 2.5060 1.9376 6.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001448257087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:36 Heat of formation + Delta-G solvation = -143.577368 kcal Electronic energy + Delta-G solvation = -21637.234120 eV Core-core repulsion = 18486.992980 eV Total energy + Delta-G solvation = -3150.241140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90733 -39.32353 -37.87035 -35.78556 -35.54939 -33.02700 -31.71715 -29.67622 -29.29832 -27.19678 -25.74444 -24.64221 -22.20369 -21.45137 -20.93969 -20.40299 -18.46183 -18.29345 -17.74042 -16.91887 -16.68912 -16.35562 -15.97284 -15.71991 -15.12244 -15.01379 -14.69142 -14.34262 -14.17098 -14.04831 -13.50083 -13.10381 -12.98529 -12.88359 -12.70817 -12.60161 -12.56672 -12.19935 -11.99329 -11.92059 -11.87306 -11.53670 -11.46902 -11.42973 -11.22747 -11.04717 -10.90200 -10.57799 -10.24249 -9.85564 -8.14292 -6.24905 1.40375 1.42154 1.50693 1.97931 2.37194 2.57028 3.14930 3.45068 3.60368 3.77176 3.81042 4.06195 4.20324 4.37932 4.40684 4.47916 4.59299 4.61990 4.68023 4.74137 4.76951 4.80830 4.85620 4.93246 4.96381 4.98376 5.03042 5.11758 5.18572 5.27556 5.30228 5.41418 5.50107 5.52533 5.58929 5.70100 5.77796 5.95155 6.22375 6.76817 6.89172 6.90109 7.40909 7.59681 8.91449 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.004876 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.326667 B = 5740.518148 C = 6375.930091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.024 3.976 3 H 0.036 0.964 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.589 6.589 14 N -0.711 5.711 15 C 0.140 3.860 16 H 0.077 0.923 17 C 0.070 3.930 18 O -0.575 6.575 19 C -0.096 4.096 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.047 0.953 28 H 0.264 0.736 29 H 0.405 0.595 30 H 0.020 0.980 31 H 0.077 0.923 32 H 0.393 0.607 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 1.453 19.882 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.003 3.997 3 H 0.054 0.946 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.469 6.469 14 N -0.363 5.363 15 C 0.036 3.964 16 H 0.095 0.905 17 C -0.009 4.009 18 O -0.382 6.382 19 C -0.133 4.133 20 C -0.115 4.115 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.156 4.156 24 C -0.155 4.155 25 H 0.088 0.912 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.242 0.758 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.386 1.438 19.562 19.759 hybrid contribution -0.197 -0.730 -1.236 1.449 sum 2.189 0.707 18.326 18.470 Atomic orbital electron populations 1.21505 0.95257 0.99131 1.01393 1.18783 0.95158 0.95774 0.90023 0.94603 1.21254 1.31555 1.12701 0.91125 0.93339 1.25615 0.95209 0.95763 1.01455 1.69950 1.37244 1.23599 1.24314 0.85647 0.78647 0.78731 0.78822 1.20135 1.19899 1.20189 1.21442 0.78056 0.83683 0.85639 1.90483 1.40207 1.28672 1.87554 1.45989 1.53657 1.32138 1.04505 1.21175 0.96485 0.93255 0.85510 0.90462 1.22512 0.84758 0.95288 0.98323 1.86417 1.22594 1.38716 1.90492 1.21780 0.99788 0.95573 0.96193 1.21795 0.94752 0.95988 0.98919 1.22451 0.94983 0.98944 0.99685 1.22500 0.98191 0.97632 0.97991 1.22339 0.94175 1.01280 0.97811 1.22190 0.98028 0.98050 0.97197 0.91181 0.96108 0.93444 0.92632 0.75953 0.96180 0.90499 0.75831 0.88937 0.90385 0.92904 0.90767 0.94387 0.92452 0.90850 0.91075 0.90701 0.92117 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.47 8.87 71.98 0.64 -4.84 16 2 C 0.02 1.24 2.64 -12.29 -0.03 1.21 16 3 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.53 -31.32 8.37 25.60 0.21 -31.10 16 5 H 0.05 3.06 6.75 -2.91 -0.02 3.04 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -52.29 11.32 21.45 0.24 -52.05 16 8 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 12 C 0.52 24.63 7.11 87.66 0.62 25.26 16 13 O -0.59 -31.72 15.12 -3.01 -0.05 -31.76 16 14 N -0.71 -25.28 4.29 -442.53 -1.90 -27.18 16 15 C 0.14 4.09 2.29 44.99 0.10 4.20 16 16 H 0.08 2.55 6.81 -2.38 -0.02 2.54 16 17 C 0.07 1.85 6.85 71.98 0.49 2.34 16 18 O -0.57 -13.52 12.83 -148.98 -1.91 -15.43 16 19 C -0.10 -2.08 3.60 30.59 0.11 -1.97 16 20 C -0.10 -2.17 2.87 -10.07 -0.03 -2.20 16 21 C -0.12 -2.84 5.46 31.67 0.17 -2.67 16 22 C -0.13 -2.41 6.91 31.89 0.22 -2.19 16 23 C -0.12 -1.89 6.83 31.67 0.22 -1.67 16 24 C -0.12 -2.10 6.46 31.32 0.20 -1.89 16 25 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.88 7.56 -2.39 -0.02 1.86 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.41 13.09 8.02 -92.70 -0.74 12.34 16 30 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.39 5.83 9.12 -74.06 -0.68 5.15 16 33 H 0.09 1.64 8.00 -2.39 -0.02 1.62 16 34 H 0.08 1.70 7.73 -2.39 -0.02 1.68 16 35 H 0.05 1.45 7.62 -2.39 -0.02 1.43 16 36 H 0.07 1.54 7.76 -2.39 -0.02 1.52 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.19 7.67 -2.38 -0.02 1.17 16 Total: -1.00 -69.35 340.81 1.37 -67.98 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.42 Total: 24.71 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 3.38 Total: -14.01 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -1.65 Total: -79.23 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -1.96 Total: -47.19 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.35 1.37 -67.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448257087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.600 kcal (2) G-P(sol) polarization free energy of solvation -69.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds