Wall clock time and date at job start Mon Mar 30 2020 00:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47034 * 2 1 4 4 C 1.50696 * 109.47535 * 239.99839 * 2 1 3 5 5 H 1.07993 * 120.00287 * 240.00407 * 4 2 1 6 6 C 1.37882 * 119.99762 * 59.99276 * 4 2 1 7 7 N 1.31509 * 120.00043 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99650 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46761 * 60.00933 * 8 6 4 10 10 H 1.48500 * 109.46786 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47389 * 300.00549 * 8 6 4 12 12 C 1.50702 * 109.46978 * 119.99696 * 2 1 3 13 13 O 1.21279 * 119.99900 * 120.00186 * 12 2 1 14 14 N 1.34780 * 119.99815 * 300.00140 * 12 2 1 15 15 C 1.46502 * 119.99645 * 180.02562 * 14 12 2 16 16 H 1.08998 * 109.47068 * 325.00251 * 15 14 12 17 17 C 1.53004 * 109.46737 * 85.00209 * 15 14 12 18 18 O 1.42899 * 109.47461 * 65.00152 * 17 15 14 19 19 C 1.52998 * 109.47175 * 204.99676 * 15 14 12 20 20 C 1.53004 * 109.46624 * 65.00251 * 19 15 14 21 21 C 1.54270 * 110.48468 * 185.00074 * 20 19 15 22 22 C 1.53869 * 106.63967 * 217.73631 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 C 1.54895 * 104.19476 * 23.60777 * 23 22 21 25 25 H 1.09000 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47443 * 300.00313 * 1 2 3 27 27 H 1.08997 * 109.46818 * 60.00324 * 1 2 3 28 28 H 0.97008 * 119.99979 * 179.97438 * 7 6 4 29 29 H 0.96993 * 120.00279 * 0.02562 * 14 12 2 30 30 H 1.09003 * 109.46893 * 184.99561 * 17 15 14 31 31 H 1.08995 * 109.47213 * 304.99544 * 17 15 14 32 32 H 0.96698 * 114.00014 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.47155 * 305.00583 * 19 15 14 34 34 H 1.08997 * 109.47231 * 184.99925 * 19 15 14 35 35 H 1.08997 * 110.53944 * 307.61164 * 20 19 15 36 36 H 1.09002 * 110.03399 * 98.42629 * 21 20 19 37 37 H 1.08995 * 110.02943 * 337.04529 * 21 20 19 38 38 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 39 39 H 1.08996 * 110.03529 * 240.68999 * 22 21 20 40 40 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 41 41 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 42 42 H 1.09001 * 110.75082 * 80.37254 * 24 23 22 43 43 H 1.08991 * 110.75596 * 203.55944 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3227 -1.1197 -4.0079 9 1 1.8282 -2.5199 -4.0080 10 1 1.8280 -0.4194 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1955 -0.9401 3.6508 16 1 2.2326 -2.0128 3.4616 17 6 3.5979 -0.4339 3.9943 18 8 3.5307 0.9470 4.3557 19 6 1.2515 -0.6611 4.8221 20 6 -0.1185 -1.2769 4.5308 21 6 -1.1248 -0.9037 5.6389 22 6 -2.0084 -2.1426 5.8671 23 6 -1.5091 -3.2263 4.8893 24 6 -0.0432 -2.8235 4.5922 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7094 1.1616 -3.4845 29 1 1.1487 0.5386 2.5436 30 1 3.9972 -1.0090 4.8298 31 1 4.2489 -0.5516 3.1282 32 1 4.3857 1.3351 4.5869 33 1 1.1451 0.4156 4.9545 34 1 1.6613 -1.1003 5.7316 35 1 -0.4849 -0.9514 3.5573 36 1 -1.7381 -0.0616 5.3181 37 1 -0.5932 -0.6501 6.5560 38 1 -1.9050 -2.4907 6.8948 39 1 -3.0505 -1.9018 5.6571 40 1 -1.5470 -4.2096 5.3579 41 1 -2.1021 -3.2174 3.9747 42 1 0.6167 -3.1458 5.3977 43 1 0.2847 -3.2355 3.6379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001448257089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:38 Heat of formation + Delta-G solvation = -122.381837 kcal Electronic energy + Delta-G solvation = -21678.185143 eV Core-core repulsion = 18528.863110 eV Total energy + Delta-G solvation = -3149.322033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40337 -38.06348 -36.74883 -34.29532 -33.65377 -31.40361 -30.12249 -28.72169 -28.19764 -25.07459 -24.75417 -22.83690 -21.00683 -20.14325 -19.67457 -19.30760 -17.28854 -16.36382 -16.07128 -15.55873 -15.38410 -14.93314 -14.54183 -14.21636 -13.93243 -13.56095 -13.38494 -13.21110 -12.79192 -12.41193 -11.96970 -11.79691 -11.67118 -11.40884 -11.21122 -11.01687 -10.95562 -10.69852 -10.65683 -10.56833 -10.48328 -10.43813 -10.32450 -10.17764 -9.91838 -9.83174 -8.92362 -8.53480 -8.30903 -8.25114 -5.97920 -4.00789 3.38887 3.41180 3.46652 3.80872 3.99676 4.46946 4.51968 4.53500 4.64406 4.71736 5.07429 5.25682 5.34052 5.36199 5.44253 5.48065 5.61291 5.63568 5.66794 5.72048 5.78537 5.87509 5.90983 5.97097 6.05382 6.18484 6.19645 6.25794 6.35628 6.49955 6.53858 6.69555 6.90146 7.00324 7.23110 7.55357 7.71929 7.82276 8.05562 8.23942 8.55812 9.07768 9.34354 9.64470 11.09623 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.005045 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.535235 B = 5549.188300 C = 6270.703001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.552 6.552 14 N -0.731 5.731 15 C 0.148 3.852 16 H 0.094 0.906 17 C 0.063 3.937 18 O -0.567 6.567 19 C -0.110 4.110 20 C -0.094 4.094 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.121 4.121 25 H 0.030 0.970 26 H 0.012 0.988 27 H 0.092 0.908 28 H 0.260 0.740 29 H 0.397 0.603 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.373 0.627 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 -1.786 17.729 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.310 3.690 13 O -0.429 6.429 14 N -0.385 5.385 15 C 0.042 3.958 16 H 0.112 0.888 17 C -0.016 4.016 18 O -0.372 6.372 19 C -0.148 4.148 20 C -0.112 4.112 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.159 4.159 25 H 0.049 0.951 26 H 0.031 0.969 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.231 0.769 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.564 -2.502 17.370 17.736 hybrid contribution 0.691 0.038 -0.654 0.952 sum -1.873 -2.464 16.717 17.001 Atomic orbital electron populations 1.21722 0.96629 0.99673 1.00850 1.18849 0.94090 0.96792 0.89468 0.93150 1.21108 1.30865 1.12723 0.89068 0.90928 1.24949 0.95186 0.95084 0.99053 1.69868 1.37185 1.23090 1.23516 0.86527 0.79242 0.79712 0.81757 1.20251 1.21418 1.20268 1.21940 0.78320 0.84074 0.84634 1.90508 1.38372 1.27149 1.86883 1.46235 1.54918 1.32321 1.04986 1.20910 0.91256 0.97748 0.85879 0.88801 1.22705 0.98523 0.82077 0.98327 1.86473 1.35179 1.24948 1.90583 1.21771 0.94128 1.01829 0.97042 1.22056 0.94655 0.95197 0.99342 1.22192 0.97223 0.97651 0.98674 1.22118 0.99231 0.95604 0.99174 1.22347 0.96646 0.98042 0.99259 1.22589 0.96248 0.95443 1.01610 0.95107 0.96940 0.88981 0.92989 0.76916 0.93761 0.92962 0.78138 0.90711 0.91300 0.90068 0.91997 0.91998 0.92282 0.92190 0.92098 0.91626 0.91764 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.35 8.37 -34.44 -0.29 -14.64 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 11.93 7.11 -10.98 -0.08 11.86 16 13 O -0.55 -14.31 15.12 5.56 0.08 -14.23 16 14 N -0.73 -13.00 4.29 -53.80 -0.23 -13.23 16 15 C 0.15 2.21 2.31 -67.93 -0.16 2.06 16 16 H 0.09 1.54 6.79 -51.93 -0.35 1.19 16 17 C 0.06 0.87 6.85 37.16 0.25 1.13 16 18 O -0.57 -7.35 12.83 -35.23 -0.45 -7.80 16 19 C -0.11 -1.32 3.82 -26.73 -0.10 -1.42 16 20 C -0.09 -1.12 2.80 -88.92 -0.25 -1.37 16 21 C -0.12 -1.23 6.37 -25.61 -0.16 -1.39 16 22 C -0.12 -1.20 6.80 -25.62 -0.17 -1.37 16 23 C -0.13 -1.33 6.83 -25.07 -0.17 -1.50 16 24 C -0.12 -1.43 5.65 -24.70 -0.14 -1.57 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.40 6.56 8.02 -40.82 -0.33 6.23 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.37 3.23 9.12 45.56 0.42 3.65 16 33 H 0.07 0.93 7.73 -51.93 -0.40 0.52 16 34 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 35 H 0.08 1.13 7.62 -51.93 -0.40 0.74 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.69 7.97 -51.93 -0.41 0.28 16 43 H 0.07 0.94 7.95 -51.93 -0.41 0.52 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -31.58 341.16 -7.84 -39.43 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.71 Total: 7.46 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.28 Total: -8.94 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.40 Total: -38.14 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.37 Total: -22.03 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.58 -7.84 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448257089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.956 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds