Wall clock time and date at job start Mon Mar 30 2020 00:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47034 * 2 1 4 4 C 1.50696 * 109.47535 * 239.99839 * 2 1 3 5 5 H 1.07993 * 120.00287 * 240.00407 * 4 2 1 6 6 C 1.37882 * 119.99762 * 59.99276 * 4 2 1 7 7 N 1.31509 * 120.00043 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99650 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46761 * 60.00933 * 8 6 4 10 10 H 1.48500 * 109.46786 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47389 * 300.00549 * 8 6 4 12 12 C 1.50702 * 109.46978 * 119.99696 * 2 1 3 13 13 O 1.21279 * 119.99900 * 120.00186 * 12 2 1 14 14 N 1.34780 * 119.99815 * 300.00140 * 12 2 1 15 15 C 1.46502 * 119.99645 * 180.02562 * 14 12 2 16 16 H 1.08998 * 109.47068 * 325.00251 * 15 14 12 17 17 C 1.53004 * 109.46737 * 85.00209 * 15 14 12 18 18 O 1.42899 * 109.47461 * 65.00152 * 17 15 14 19 19 C 1.52998 * 109.47175 * 204.99676 * 15 14 12 20 20 C 1.53004 * 109.46624 * 65.00251 * 19 15 14 21 21 C 1.54270 * 110.48468 * 185.00074 * 20 19 15 22 22 C 1.53869 * 106.63967 * 217.73631 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 C 1.54895 * 104.19476 * 23.60777 * 23 22 21 25 25 H 1.09000 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47443 * 300.00313 * 1 2 3 27 27 H 1.08997 * 109.46818 * 60.00324 * 1 2 3 28 28 H 0.97008 * 119.99979 * 179.97438 * 7 6 4 29 29 H 0.96993 * 120.00279 * 0.02562 * 14 12 2 30 30 H 1.09003 * 109.46893 * 184.99561 * 17 15 14 31 31 H 1.08995 * 109.47213 * 304.99544 * 17 15 14 32 32 H 0.96698 * 114.00014 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.47155 * 305.00583 * 19 15 14 34 34 H 1.08997 * 109.47231 * 184.99925 * 19 15 14 35 35 H 1.08997 * 110.53944 * 307.61164 * 20 19 15 36 36 H 1.09002 * 110.03399 * 98.42629 * 21 20 19 37 37 H 1.08995 * 110.02943 * 337.04529 * 21 20 19 38 38 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 39 39 H 1.08996 * 110.03529 * 240.68999 * 22 21 20 40 40 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 41 41 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 42 42 H 1.09001 * 110.75082 * 80.37254 * 24 23 22 43 43 H 1.08991 * 110.75596 * 203.55944 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3227 -1.1197 -4.0079 9 1 1.8282 -2.5199 -4.0080 10 1 1.8280 -0.4194 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1955 -0.9401 3.6508 16 1 2.2326 -2.0128 3.4616 17 6 3.5979 -0.4339 3.9943 18 8 3.5307 0.9470 4.3557 19 6 1.2515 -0.6611 4.8221 20 6 -0.1185 -1.2769 4.5308 21 6 -1.1248 -0.9037 5.6389 22 6 -2.0084 -2.1426 5.8671 23 6 -1.5091 -3.2263 4.8893 24 6 -0.0432 -2.8235 4.5922 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7094 1.1616 -3.4845 29 1 1.1487 0.5386 2.5436 30 1 3.9972 -1.0090 4.8298 31 1 4.2489 -0.5516 3.1282 32 1 4.3857 1.3351 4.5869 33 1 1.1451 0.4156 4.9545 34 1 1.6613 -1.1003 5.7316 35 1 -0.4849 -0.9514 3.5573 36 1 -1.7381 -0.0616 5.3181 37 1 -0.5932 -0.6501 6.5560 38 1 -1.9050 -2.4907 6.8948 39 1 -3.0505 -1.9018 5.6571 40 1 -1.5470 -4.2096 5.3579 41 1 -2.1021 -3.2174 3.9747 42 1 0.6167 -3.1458 5.3977 43 1 0.2847 -3.2355 3.6379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001448257089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:38 Heat of formation + Delta-G solvation = -144.016916 kcal Electronic energy + Delta-G solvation = -21679.123310 eV Core-core repulsion = 18528.863110 eV Total energy + Delta-G solvation = -3150.260200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88844 -39.26858 -37.88606 -35.78347 -35.56345 -33.03505 -31.75642 -29.64908 -29.29888 -27.19186 -25.75936 -24.64247 -22.19352 -21.29617 -20.88139 -20.59575 -18.44184 -18.28620 -17.78311 -16.89968 -16.66864 -16.33783 -16.07352 -15.56056 -15.24767 -14.86235 -14.73587 -14.34636 -14.21471 -14.10606 -13.48673 -13.09767 -12.95889 -12.86718 -12.68351 -12.61038 -12.57861 -12.19739 -12.02788 -11.99033 -11.87997 -11.52386 -11.45550 -11.37047 -11.19147 -11.04315 -10.90857 -10.58066 -10.23980 -9.85025 -8.14177 -6.24749 1.40448 1.42238 1.50764 1.98333 2.37284 2.57284 3.15067 3.44933 3.58740 3.77038 3.83929 4.07836 4.20268 4.37026 4.41209 4.47064 4.61616 4.62195 4.66887 4.74551 4.78015 4.81107 4.85466 4.95198 4.95878 4.97946 5.03400 5.10916 5.18386 5.28121 5.30978 5.38355 5.50433 5.55066 5.60217 5.70351 5.78446 5.95643 6.22731 6.77082 6.89135 6.90147 7.41054 7.59991 8.91519 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.005045 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.535235 B = 5549.188300 C = 6270.703001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.024 3.976 3 H 0.035 0.965 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.589 6.589 14 N -0.711 5.711 15 C 0.141 3.859 16 H 0.078 0.922 17 C 0.069 3.931 18 O -0.576 6.576 19 C -0.096 4.096 20 C -0.096 4.096 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.122 4.122 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.264 0.736 29 H 0.405 0.595 30 H 0.078 0.922 31 H 0.020 0.980 32 H 0.393 0.607 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.722 -1.516 19.667 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.003 3.997 3 H 0.053 0.947 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.469 6.469 14 N -0.363 5.363 15 C 0.036 3.964 16 H 0.096 0.904 17 C -0.010 4.010 18 O -0.383 6.383 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.164 4.164 24 C -0.160 4.160 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.241 0.759 30 H 0.096 0.904 31 H 0.038 0.962 32 H 0.242 0.758 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.947 -2.192 19.352 19.698 hybrid contribution 0.820 -0.011 -1.208 1.460 sum -2.127 -2.202 18.144 18.401 Atomic orbital electron populations 1.21518 0.95207 0.99223 1.01463 1.18781 0.95235 0.95701 0.90022 0.94722 1.21254 1.31561 1.12690 0.91126 0.93336 1.25617 0.95219 0.95759 1.01457 1.69953 1.37250 1.23596 1.24304 0.85648 0.78656 0.78723 0.78823 1.20150 1.19909 1.20172 1.21440 0.78174 0.83552 0.85640 1.90484 1.40160 1.28720 1.87558 1.45989 1.53762 1.32038 1.04506 1.21167 0.93070 0.96637 0.85496 0.90431 1.22528 0.96828 0.83236 0.98371 1.86416 1.37058 1.24347 1.90498 1.21698 0.93265 1.02143 0.96227 1.22027 0.95200 0.95231 0.98975 1.22167 0.96841 0.97917 0.98382 1.22115 0.99271 0.94823 0.99612 1.22356 0.95596 0.99234 0.99227 1.22582 0.97364 0.95381 1.00654 0.95944 0.93348 0.91196 0.92638 0.75950 0.90425 0.96165 0.75801 0.90395 0.88885 0.92527 0.91916 0.90503 0.90724 0.91789 0.90934 0.92938 0.90299 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.87 71.98 0.64 -4.84 16 2 C 0.02 1.24 2.64 -12.29 -0.03 1.21 16 3 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.53 -31.30 8.37 25.60 0.21 -31.08 16 5 H 0.05 3.06 6.75 -2.91 -0.02 3.04 16 6 C 0.02 1.06 5.30 84.66 0.45 1.50 16 7 N -0.91 -52.29 11.32 21.45 0.24 -52.04 16 8 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.52 24.60 7.11 87.66 0.62 25.23 16 13 O -0.59 -31.68 15.12 -3.03 -0.05 -31.73 16 14 N -0.71 -25.23 4.29 -442.52 -1.90 -27.13 16 15 C 0.14 4.10 2.31 44.99 0.10 4.20 16 16 H 0.08 2.56 6.79 -2.39 -0.02 2.54 16 17 C 0.07 1.83 6.85 71.98 0.49 2.32 16 18 O -0.58 -13.59 12.83 -148.98 -1.91 -15.50 16 19 C -0.10 -2.06 3.82 30.60 0.12 -1.95 16 20 C -0.10 -2.14 2.80 -9.69 -0.03 -2.17 16 21 C -0.12 -2.05 6.37 31.32 0.20 -1.85 16 22 C -0.12 -2.02 6.80 31.32 0.21 -1.81 16 23 C -0.13 -2.52 6.83 31.67 0.22 -2.30 16 24 C -0.12 -2.77 5.65 31.91 0.18 -2.59 16 25 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 27 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 28 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 29 H 0.41 13.05 8.02 -92.71 -0.74 12.31 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.39 5.83 9.12 -74.06 -0.68 5.16 16 33 H 0.08 1.69 7.73 -2.39 -0.02 1.67 16 34 H 0.09 1.63 8.02 -2.39 -0.02 1.61 16 35 H 0.06 1.54 7.62 -2.39 -0.02 1.52 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.16 7.84 -2.39 -0.02 1.14 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.54 7.97 -2.39 -0.02 1.52 16 43 H 0.04 1.13 7.95 -2.39 -0.02 1.11 16 Total: -1.00 -69.37 341.16 1.38 -67.99 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.42 Total: 24.80 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 3.39 Total: -14.13 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -1.66 Total: -79.17 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.96 Total: -47.23 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -69.37 1.38 -67.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448257089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.024 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds