Wall clock time and date at job start Mon Mar 30 2020 00:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46721 * 2 1 4 4 C 1.50695 * 109.47628 * 120.00461 * 2 1 3 5 5 H 1.07995 * 120.00391 * 119.99763 * 4 2 1 6 6 C 1.37882 * 119.99561 * 300.00439 * 4 2 1 7 7 N 1.31514 * 120.00231 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99706 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46918 * 59.99642 * 8 6 4 10 10 H 1.48501 * 109.47171 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47165 * 299.99700 * 8 6 4 12 12 N 1.46903 * 109.47111 * 240.00489 * 2 1 3 13 13 C 1.46898 * 111.00071 * 84.99304 * 12 2 1 14 14 C 1.53001 * 109.47241 * 180.02562 * 13 12 2 15 15 H 1.09002 * 110.61750 * 59.30242 * 14 13 12 16 16 C 1.54912 * 110.84161 * 182.48031 * 14 13 12 17 17 O 1.44796 * 101.72610 * 153.98804 * 16 14 13 18 18 C 1.43689 * 104.79581 * 323.93388 * 17 16 14 19 19 C 1.52947 * 109.45417 * 144.13318 * 18 17 16 20 20 C 1.53023 * 109.45104 * 179.79365 * 19 18 17 21 21 C 1.52992 * 109.47115 * 300.22361 * 20 19 18 22 22 C 1.53004 * 109.49745 * 60.15999 * 21 20 19 23 23 C 1.52967 * 109.42383 * 264.52463 * 18 17 16 24 24 O 1.43311 * 108.85539 * 24.30798 * 18 17 16 25 25 H 1.09004 * 109.47383 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47002 * 299.99318 * 1 2 3 27 27 H 1.09001 * 109.47865 * 59.99674 * 1 2 3 28 28 H 0.96998 * 120.00079 * 180.02562 * 7 6 4 29 29 H 1.00896 * 111.00075 * 208.95169 * 12 2 1 30 30 H 1.09004 * 109.46803 * 60.00150 * 13 12 2 31 31 H 1.09002 * 109.47672 * 300.00822 * 13 12 2 32 32 H 1.09002 * 110.97806 * 272.09618 * 16 14 13 33 33 H 1.09004 * 110.98113 * 35.87889 * 16 14 13 34 34 H 1.09003 * 109.47121 * 299.78107 * 19 18 17 35 35 H 1.08999 * 109.47833 * 59.79365 * 19 18 17 36 36 H 1.09006 * 109.46799 * 180.22496 * 20 19 18 37 37 H 1.08994 * 109.46971 * 60.22773 * 20 19 18 38 38 H 1.09002 * 109.46966 * 300.15628 * 21 20 19 39 39 H 1.08991 * 109.46556 * 180.16525 * 21 20 19 40 40 H 1.08999 * 109.47347 * 179.83749 * 22 21 20 41 41 H 1.09000 * 109.47416 * 59.83030 * 22 21 20 42 42 H 1.08996 * 109.47705 * 300.17042 * 23 18 17 43 43 H 1.09003 * 109.46954 * 60.18368 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1210 4.0079 10 1 1.8271 -0.4202 5.2204 11 1 1.8260 -2.5204 4.0075 12 7 2.0197 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5949 -0.5329 -3.5746 15 1 1.9375 -1.3692 -3.8126 16 6 2.7324 0.4183 -4.7895 17 8 3.7577 -0.2448 -5.5678 18 6 4.6564 -0.7999 -4.5937 19 6 5.1851 -2.1443 -5.0960 20 6 6.1461 -2.7329 -4.0609 21 6 7.3143 -1.7691 -3.8435 22 6 6.7818 -0.4278 -3.3351 23 6 5.8222 0.1648 -4.3692 24 8 3.9460 -0.9907 -3.3638 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 0.7094 1.1615 3.4844 29 1 2.9173 -1.1204 -1.0289 30 1 2.7587 1.0464 -2.1182 31 1 1.0869 0.6165 -2.5525 32 1 1.7973 0.4779 -5.3463 33 1 3.0611 1.4087 -4.4745 34 1 4.3507 -2.8290 -5.2478 35 1 5.7117 -1.9983 -6.0392 36 1 6.5262 -3.6892 -4.4204 37 1 5.6184 -2.8826 -3.1190 38 1 7.8403 -1.6173 -4.7860 39 1 8.0002 -2.1897 -3.1083 40 1 7.6146 0.2576 -3.1776 41 1 6.2533 -0.5798 -2.3940 42 1 6.3515 0.3201 -5.3092 43 1 5.4396 1.1185 -4.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473596291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:22 Heat of formation + Delta-G solvation = -110.532712 kcal Electronic energy + Delta-G solvation = -21904.403009 eV Core-core repulsion = 18755.594793 eV Total energy + Delta-G solvation = -3148.808216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80956 -37.14976 -35.95098 -34.70104 -32.69692 -30.97779 -30.78729 -28.89744 -27.49890 -25.28644 -24.17428 -22.80816 -22.07009 -21.33837 -19.76720 -19.55230 -17.26099 -16.74175 -16.13137 -15.65412 -14.88218 -14.80149 -14.58044 -14.36431 -13.94135 -13.70286 -13.17007 -12.99934 -12.89102 -12.68360 -12.38630 -12.25322 -12.18614 -11.64974 -11.49488 -11.22547 -11.11053 -10.85291 -10.76623 -10.72995 -10.62571 -10.44133 -10.29333 -10.12216 -9.95782 -9.84897 -9.27582 -8.82500 -8.45995 -7.27149 -6.01527 -4.07537 3.32501 3.36449 3.39781 3.46580 3.99359 4.39905 4.56002 4.66204 4.67297 4.90675 5.00974 5.10405 5.17181 5.24059 5.29944 5.40411 5.43989 5.49199 5.52869 5.57522 5.69974 5.75769 5.84108 5.92816 5.97201 6.09243 6.13345 6.20451 6.21465 6.23608 6.35287 6.47124 6.86700 7.12958 7.21983 7.28562 7.49468 7.79519 7.90726 8.28313 8.40479 8.68825 9.03048 9.58210 11.04925 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.004869 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.117696 B = 5749.414667 C = 6589.205291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.685 5.685 13 C 0.066 3.934 14 C 0.056 3.944 15 H 0.089 0.911 16 C 0.020 3.980 17 O -0.378 6.378 18 C 0.257 3.743 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.134 4.134 24 O -0.361 6.361 25 H 0.031 0.969 26 H 0.081 0.919 27 H 0.003 0.997 28 H 0.261 0.739 29 H 0.339 0.661 30 H 0.026 0.974 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 -1.883 -15.409 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.065 4.065 14 C -0.002 4.002 15 H 0.107 0.893 16 C -0.057 4.057 17 O -0.299 6.299 18 C 0.180 3.820 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.172 4.172 24 O -0.282 6.282 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.022 0.978 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.954 -2.108 -15.463 17.516 hybrid contribution 0.882 0.326 1.065 1.421 sum 8.836 -1.781 -14.398 16.987 Atomic orbital electron populations 1.21721 0.97918 0.99350 0.99286 1.19107 0.92546 0.92315 0.85668 0.98248 1.21223 1.31386 1.12505 0.90421 0.92246 1.24915 0.95055 0.95003 0.99021 1.69885 1.36703 1.22901 1.23534 0.86580 0.79095 0.79802 0.82043 1.20329 1.21312 1.20175 1.60712 1.32753 1.32406 1.05767 1.21971 0.99531 0.94062 0.90921 1.23942 0.84337 0.96547 0.95344 0.89287 1.24402 0.92355 0.96692 0.92202 1.89187 1.38608 1.71745 1.30364 1.23251 0.88314 0.92873 0.77524 1.21764 0.99737 0.94895 0.99025 1.21460 0.95931 0.97923 0.99941 1.21550 0.97589 0.95671 1.00878 1.21453 0.98266 0.96322 0.99307 1.22092 0.96219 0.98656 1.00243 1.88936 1.22130 1.84921 1.32238 0.94933 0.90088 0.97826 0.92903 0.84351 0.95570 0.90487 0.87534 0.90814 0.90979 0.90841 0.91798 0.90491 0.92359 0.91799 0.91943 0.90529 0.90780 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.41 2.60 -68.87 -0.18 5.23 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.37 8.59 -34.44 -0.30 -14.67 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -14.91 6.30 -107.95 -0.68 -15.59 16 13 C 0.07 1.17 5.28 -3.82 -0.02 1.15 16 14 C 0.06 0.85 3.93 -25.72 -0.10 0.75 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 16 C 0.02 0.26 7.36 38.17 0.28 0.54 16 17 O -0.38 -5.27 10.99 -59.04 -0.65 -5.92 16 18 C 0.26 3.49 1.02 -26.78 -0.03 3.46 16 19 C -0.12 -1.39 5.33 -26.75 -0.14 -1.53 16 20 C -0.12 -1.28 5.79 -26.72 -0.15 -1.44 16 21 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 22 C -0.12 -1.36 5.79 -26.72 -0.15 -1.51 16 23 C -0.13 -1.65 5.28 -26.74 -0.14 -1.79 16 24 O -0.36 -5.72 8.86 -59.04 -0.52 -6.24 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 27 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.34 7.53 7.80 -39.29 -0.31 7.22 16 30 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 31 H 0.08 1.32 7.44 -51.93 -0.39 0.94 16 32 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.06 7.72 -51.93 -0.40 0.66 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -29.08 333.29 -9.69 -38.77 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.62 Total: 4.82 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.85 Total: -12.34 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.05 Total: -40.56 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -1.17 Total: -12.16 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.08 -9.69 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473596291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.758 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds