Wall clock time and date at job start Mon Mar 30 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46885 * 2 1 4 4 C 1.50698 * 109.47055 * 239.99952 * 2 1 3 5 5 H 1.08000 * 120.00294 * 245.41275 * 4 2 1 6 6 C 1.37875 * 120.00009 * 65.14378 * 4 2 1 7 7 N 1.31514 * 120.00151 * 355.40328 * 6 4 2 8 8 Si 1.86803 * 120.00180 * 175.40335 * 6 4 2 9 9 H 1.48503 * 109.46925 * 94.99823 * 8 6 4 10 10 H 1.48496 * 109.47564 * 214.99566 * 8 6 4 11 11 H 1.48503 * 109.46959 * 335.00010 * 8 6 4 12 12 N 1.46898 * 109.47379 * 119.99575 * 2 1 3 13 13 C 1.46897 * 111.00135 * 275.00230 * 12 2 1 14 14 C 1.53000 * 109.46825 * 179.97438 * 13 12 2 15 15 H 1.08998 * 110.86776 * 302.64433 * 14 13 12 16 16 C 1.54921 * 110.97549 * 178.79320 * 14 13 12 17 17 O 1.44216 * 103.08373 * 206.36538 * 16 14 13 18 18 C 1.43300 * 107.25557 * 21.40259 * 17 16 14 19 19 C 1.52959 * 109.67383 * 120.37720 * 18 17 16 20 20 C 1.53019 * 109.43218 * 180.26428 * 19 18 17 21 21 C 1.52998 * 109.46684 * 300.21769 * 20 19 18 22 22 C 1.52996 * 109.51576 * 60.13994 * 21 20 19 23 23 C 1.52964 * 109.65334 * 241.03903 * 18 17 16 24 24 O 1.43700 * 108.86651 * 0.69555 * 18 17 16 25 25 H 1.09000 * 109.47004 * 174.95607 * 1 2 3 26 26 H 1.08994 * 109.47365 * 294.95188 * 1 2 3 27 27 H 1.08998 * 109.47169 * 54.95685 * 1 2 3 28 28 H 0.97006 * 120.00360 * 180.02562 * 7 6 4 29 29 H 1.00899 * 111.00172 * 151.04354 * 12 2 1 30 30 H 1.08996 * 109.47117 * 299.99754 * 13 12 2 31 31 H 1.08999 * 109.47030 * 60.00166 * 13 12 2 32 32 H 1.09000 * 110.69680 * 324.76057 * 16 14 13 33 33 H 1.09000 * 110.69949 * 87.96915 * 16 14 13 34 34 H 1.09007 * 109.47463 * 300.24892 * 19 18 17 35 35 H 1.09003 * 109.47836 * 60.27326 * 19 18 17 36 36 H 1.09001 * 109.46886 * 180.22289 * 20 19 18 37 37 H 1.09000 * 109.47453 * 60.21753 * 20 19 18 38 38 H 1.09000 * 109.45930 * 300.12382 * 21 20 19 39 39 H 1.08999 * 109.45107 * 180.14481 * 21 20 19 40 40 H 1.09001 * 109.46896 * 179.85635 * 22 21 20 41 41 H 1.08995 * 109.47654 * 59.84906 * 22 21 20 42 42 H 1.09001 * 109.47856 * 299.70093 * 23 18 17 43 43 H 1.08992 * 109.47855 * 59.71875 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5792 -1.6367 -1.1338 6 6 1.7889 -0.1808 -2.4799 7 7 1.0420 0.8946 -2.6042 8 14 2.5199 -0.9906 -3.9963 9 1 1.5262 -1.9225 -4.5874 10 1 2.8740 0.0523 -4.9924 11 1 3.7405 -1.7454 -3.6145 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3468 14 6 2.5951 -0.5330 3.5744 15 1 1.9598 -1.3906 3.7957 16 6 2.7038 0.4085 4.7999 17 8 3.7313 -0.2127 5.5987 18 6 4.5007 -1.0493 4.7260 19 6 5.9612 -0.5948 4.7323 20 6 6.7761 -1.4874 3.7939 21 6 6.6867 -2.9399 4.2663 22 6 5.2252 -3.3924 4.2536 23 6 4.4079 -2.5030 5.1930 24 8 3.9726 -0.9412 3.3939 25 1 -0.3633 -1.0237 -0.0904 26 1 -0.3634 0.4335 0.9317 27 1 -0.3633 0.5901 -0.8413 28 1 0.8704 1.2670 -3.4834 29 1 2.9173 -1.1204 1.0288 30 1 2.7588 1.0463 2.1181 31 1 1.0871 0.6164 2.5525 32 1 3.0078 1.4087 4.4914 33 1 1.7603 0.4424 5.3446 34 1 6.0214 0.4395 4.3934 35 1 6.3609 -0.6700 5.7436 36 1 7.8178 -1.1665 3.8009 37 1 6.3787 -1.4093 2.7819 38 1 7.0822 -3.0173 5.2790 39 1 7.2694 -3.5751 3.5991 40 1 5.1627 -4.4280 4.5878 41 1 4.8289 -3.3126 3.2414 42 1 4.8021 -2.5852 6.2059 43 1 3.3660 -2.8226 5.1814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473596292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:23 Heat of formation + Delta-G solvation = -111.514769 kcal Electronic energy + Delta-G solvation = -21857.421215 eV Core-core repulsion = 18708.570414 eV Total energy + Delta-G solvation = -3148.850801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80893 -37.15046 -35.96125 -34.69640 -32.69036 -30.97700 -30.82335 -28.94446 -27.50385 -25.28472 -24.16482 -22.87713 -22.07407 -21.24961 -19.76547 -19.60734 -17.23944 -16.75781 -16.12818 -15.51646 -15.12846 -14.89216 -14.55823 -14.19949 -14.06343 -13.71399 -13.18192 -13.03052 -12.82815 -12.62304 -12.37145 -12.28903 -12.22345 -11.67363 -11.48576 -11.22466 -11.08740 -10.87955 -10.74576 -10.69118 -10.63557 -10.46842 -10.30922 -10.18580 -9.95154 -9.86376 -9.31769 -8.83192 -8.47414 -7.29042 -6.03405 -4.08237 3.30072 3.36773 3.40967 3.45722 3.99889 4.38927 4.54390 4.66136 4.67380 4.90033 5.04256 5.10858 5.17957 5.23297 5.29509 5.39433 5.43475 5.48970 5.52143 5.59416 5.68052 5.75405 5.82110 5.93192 5.96364 6.08465 6.13635 6.18786 6.19316 6.25015 6.33075 6.45751 6.85330 7.09523 7.20783 7.25472 7.47156 7.79342 7.87854 8.23199 8.37048 8.67621 9.02832 9.57733 11.04185 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.004787 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.019050 B = 5847.958820 C = 6670.214101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.210 3.790 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.686 5.686 13 C 0.070 3.930 14 C 0.052 3.948 15 H 0.088 0.912 16 C 0.025 3.975 17 O -0.385 6.385 18 C 0.257 3.743 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.133 4.133 24 O -0.356 6.356 25 H 0.033 0.967 26 H 0.004 0.996 27 H 0.073 0.927 28 H 0.260 0.740 29 H 0.339 0.661 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.573 -3.586 15.870 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.103 3.897 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.318 5.318 13 C -0.060 4.060 14 C -0.006 4.006 15 H 0.106 0.894 16 C -0.052 4.052 17 O -0.306 6.306 18 C 0.180 3.820 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.171 4.171 24 O -0.277 6.277 25 H 0.052 0.948 26 H 0.023 0.977 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.035 -3.717 15.902 17.781 hybrid contribution 0.870 0.235 -1.072 1.400 sum 7.905 -3.483 14.830 17.163 Atomic orbital electron populations 1.21694 0.97974 0.99891 0.98308 1.19125 0.92436 0.92488 0.85678 0.97934 1.21247 1.35283 1.08519 0.90573 0.92129 1.24924 0.94991 0.95065 0.99013 1.69929 1.37384 1.22050 1.23562 0.86520 0.79538 0.78994 0.82586 1.20712 1.21236 1.19836 1.60722 1.32759 1.32470 1.05838 1.21866 0.99603 0.94095 0.90474 1.24114 0.83940 0.96858 0.95688 0.89402 1.24216 0.91835 0.97293 0.91852 1.88823 1.45645 1.62189 1.33936 1.23242 0.91152 0.90335 0.77258 1.21797 0.92569 1.00392 1.00727 1.21477 0.99335 0.94387 1.00205 1.21549 0.96698 0.96418 1.01018 1.21458 0.94835 0.98143 1.00838 1.22061 1.01385 0.93806 0.99866 1.89302 1.24398 1.89150 1.24829 0.94813 0.97682 0.90814 0.92972 0.84340 0.95244 0.90292 0.90701 0.88443 0.91076 0.90634 0.91839 0.90572 0.92340 0.91808 0.91868 0.90487 0.90906 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 9.20 37.16 0.34 -2.63 16 2 C 0.21 5.35 2.55 -68.87 -0.18 5.18 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.32 16 4 C -0.52 -14.35 8.50 -34.44 -0.29 -14.64 16 5 H 0.06 1.67 7.68 -52.49 -0.40 1.27 16 6 C 0.06 1.73 5.36 -17.82 -0.10 1.63 16 7 N -0.89 -25.60 11.58 55.43 0.64 -24.96 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.69 -14.81 6.30 -107.96 -0.68 -15.49 16 13 C 0.07 1.24 5.27 -3.83 -0.02 1.22 16 14 C 0.05 0.78 3.72 -25.72 -0.10 0.68 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 16 C 0.02 0.32 7.54 38.17 0.29 0.61 16 17 O -0.38 -5.40 10.87 -59.04 -0.64 -6.05 16 18 C 0.26 3.48 1.03 -26.77 -0.03 3.45 16 19 C -0.12 -1.41 5.34 -26.74 -0.14 -1.56 16 20 C -0.12 -1.31 5.78 -26.72 -0.15 -1.47 16 21 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 22 C -0.12 -1.30 5.78 -26.72 -0.15 -1.45 16 23 C -0.13 -1.59 5.29 -26.74 -0.14 -1.74 16 24 O -0.36 -5.62 9.04 -59.04 -0.53 -6.16 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.00 0.09 7.35 -51.93 -0.38 -0.29 16 27 H 0.07 1.97 6.44 -51.93 -0.33 1.64 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.34 7.48 7.94 -39.29 -0.31 7.16 16 30 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 31 H 0.08 1.35 7.36 -51.93 -0.38 0.96 16 32 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -29.00 333.86 -9.67 -38.67 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.64 Total: 4.62 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.83 Total: -12.08 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.04 Total: -40.44 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -1.18 Total: -12.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.00 -9.67 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473596292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.840 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds