Wall clock time and date at job start Mon Mar 30 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46885 * 2 1 4 4 C 1.50698 * 109.47055 * 239.99952 * 2 1 3 5 5 H 1.08000 * 120.00294 * 245.41275 * 4 2 1 6 6 C 1.37875 * 120.00009 * 65.14378 * 4 2 1 7 7 N 1.31514 * 120.00151 * 355.40328 * 6 4 2 8 8 Si 1.86803 * 120.00180 * 175.40335 * 6 4 2 9 9 H 1.48503 * 109.46925 * 94.99823 * 8 6 4 10 10 H 1.48496 * 109.47564 * 214.99566 * 8 6 4 11 11 H 1.48503 * 109.46959 * 335.00010 * 8 6 4 12 12 N 1.46898 * 109.47379 * 119.99575 * 2 1 3 13 13 C 1.46897 * 111.00135 * 275.00230 * 12 2 1 14 14 C 1.53000 * 109.46825 * 179.97438 * 13 12 2 15 15 H 1.08998 * 110.86776 * 302.64433 * 14 13 12 16 16 C 1.54921 * 110.97549 * 178.79320 * 14 13 12 17 17 O 1.44216 * 103.08373 * 206.36538 * 16 14 13 18 18 C 1.43300 * 107.25557 * 21.40259 * 17 16 14 19 19 C 1.52959 * 109.67383 * 120.37720 * 18 17 16 20 20 C 1.53019 * 109.43218 * 180.26428 * 19 18 17 21 21 C 1.52998 * 109.46684 * 300.21769 * 20 19 18 22 22 C 1.52996 * 109.51576 * 60.13994 * 21 20 19 23 23 C 1.52964 * 109.65334 * 241.03903 * 18 17 16 24 24 O 1.43700 * 108.86651 * 0.69555 * 18 17 16 25 25 H 1.09000 * 109.47004 * 174.95607 * 1 2 3 26 26 H 1.08994 * 109.47365 * 294.95188 * 1 2 3 27 27 H 1.08998 * 109.47169 * 54.95685 * 1 2 3 28 28 H 0.97006 * 120.00360 * 180.02562 * 7 6 4 29 29 H 1.00899 * 111.00172 * 151.04354 * 12 2 1 30 30 H 1.08996 * 109.47117 * 299.99754 * 13 12 2 31 31 H 1.08999 * 109.47030 * 60.00166 * 13 12 2 32 32 H 1.09000 * 110.69680 * 324.76057 * 16 14 13 33 33 H 1.09000 * 110.69949 * 87.96915 * 16 14 13 34 34 H 1.09007 * 109.47463 * 300.24892 * 19 18 17 35 35 H 1.09003 * 109.47836 * 60.27326 * 19 18 17 36 36 H 1.09001 * 109.46886 * 180.22289 * 20 19 18 37 37 H 1.09000 * 109.47453 * 60.21753 * 20 19 18 38 38 H 1.09000 * 109.45930 * 300.12382 * 21 20 19 39 39 H 1.08999 * 109.45107 * 180.14481 * 21 20 19 40 40 H 1.09001 * 109.46896 * 179.85635 * 22 21 20 41 41 H 1.08995 * 109.47654 * 59.84906 * 22 21 20 42 42 H 1.09001 * 109.47856 * 299.70093 * 23 18 17 43 43 H 1.08992 * 109.47855 * 59.71875 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5792 -1.6367 -1.1338 6 6 1.7889 -0.1808 -2.4799 7 7 1.0420 0.8946 -2.6042 8 14 2.5199 -0.9906 -3.9963 9 1 1.5262 -1.9225 -4.5874 10 1 2.8740 0.0523 -4.9924 11 1 3.7405 -1.7454 -3.6145 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3468 14 6 2.5951 -0.5330 3.5744 15 1 1.9598 -1.3906 3.7957 16 6 2.7038 0.4085 4.7999 17 8 3.7313 -0.2127 5.5987 18 6 4.5007 -1.0493 4.7260 19 6 5.9612 -0.5948 4.7323 20 6 6.7761 -1.4874 3.7939 21 6 6.6867 -2.9399 4.2663 22 6 5.2252 -3.3924 4.2536 23 6 4.4079 -2.5030 5.1930 24 8 3.9726 -0.9412 3.3939 25 1 -0.3633 -1.0237 -0.0904 26 1 -0.3634 0.4335 0.9317 27 1 -0.3633 0.5901 -0.8413 28 1 0.8704 1.2670 -3.4834 29 1 2.9173 -1.1204 1.0288 30 1 2.7588 1.0463 2.1181 31 1 1.0871 0.6164 2.5525 32 1 3.0078 1.4087 4.4914 33 1 1.7603 0.4424 5.3446 34 1 6.0214 0.4395 4.3934 35 1 6.3609 -0.6700 5.7436 36 1 7.8178 -1.1665 3.8009 37 1 6.3787 -1.4093 2.7819 38 1 7.0822 -3.0173 5.2790 39 1 7.2694 -3.5751 3.5991 40 1 5.1627 -4.4280 4.5878 41 1 4.8289 -3.3126 3.2414 42 1 4.8021 -2.5852 6.2059 43 1 3.3660 -2.8226 5.1814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473596292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:23 Heat of formation + Delta-G solvation = -129.494363 kcal Electronic energy + Delta-G solvation = -21858.200869 eV Core-core repulsion = 18708.570414 eV Total energy + Delta-G solvation = -3149.630455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.89130 -38.28109 -37.51831 -35.98395 -34.54567 -32.36018 -31.81656 -30.34595 -28.88987 -27.33021 -25.60154 -23.82905 -23.06614 -22.53101 -21.70345 -20.58060 -18.65036 -18.35865 -17.39842 -16.89839 -16.48018 -16.27820 -15.80872 -15.65953 -15.29081 -15.09478 -14.61818 -14.27565 -14.00839 -13.90905 -13.73015 -13.41747 -13.21782 -13.17238 -12.95291 -12.93831 -12.68088 -12.53316 -12.24910 -12.21049 -12.11831 -11.75435 -11.65620 -11.50262 -11.33197 -11.09295 -10.90903 -10.59041 -10.33263 -9.11282 -8.16234 -6.28794 1.40808 1.41322 1.52703 2.38549 2.40280 2.93534 3.13777 3.25719 3.69224 3.72151 3.84347 3.97549 4.02941 4.08072 4.26573 4.28268 4.40937 4.48455 4.51930 4.53910 4.61007 4.64383 4.78240 4.82941 4.91066 4.91868 5.03274 5.04988 5.09287 5.19977 5.21563 5.24837 5.29761 5.32960 5.44456 5.54227 5.65820 5.82917 6.17147 6.18272 6.41631 6.73484 6.95631 7.41480 8.90690 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.004787 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.019050 B = 5847.958820 C = 6670.214101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.214 3.786 3 H -0.029 1.029 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.683 5.683 13 C 0.072 3.928 14 C 0.056 3.944 15 H 0.090 0.910 16 C 0.030 3.970 17 O -0.392 6.392 18 C 0.248 3.752 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.131 4.131 24 O -0.378 6.378 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.018 0.982 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 -4.462 17.085 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 H -0.011 1.011 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.194 1.194 12 N -0.313 5.313 13 C -0.057 4.057 14 C -0.001 4.001 15 H 0.108 0.892 16 C -0.047 4.047 17 O -0.313 6.313 18 C 0.172 3.828 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.169 4.169 24 O -0.299 6.299 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.036 0.964 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.818 -4.596 17.138 19.389 hybrid contribution 0.632 0.536 -1.407 1.633 sum 8.450 -4.060 15.731 18.312 Atomic orbital electron populations 1.21505 0.97352 0.99205 0.98587 1.18948 0.92883 0.90810 0.86807 1.01117 1.21551 1.35628 1.08659 0.91895 0.92602 1.25723 0.95226 0.95640 1.01926 1.70044 1.38126 1.23122 1.24339 0.85499 0.78867 0.78146 0.78856 1.20038 1.20699 1.19353 1.60650 1.32411 1.32836 1.05435 1.21903 1.00154 0.93501 0.90189 1.23978 0.83876 0.97157 0.95099 0.89210 1.24269 0.92855 0.96572 0.90993 1.88810 1.45904 1.62451 1.34139 1.23539 0.91667 0.91323 0.76280 1.21835 0.91928 0.99861 1.01837 1.21461 0.99941 0.95348 0.98500 1.21547 0.96028 0.95465 1.02284 1.21446 0.95410 0.99095 0.99198 1.22064 1.01311 0.92706 1.00769 1.89296 1.24635 1.89352 1.26596 0.95307 0.95202 0.93159 0.92794 0.84893 0.96371 0.89284 0.90495 0.85762 0.92170 0.88820 0.90179 0.93341 0.90387 0.91055 0.90180 0.93153 0.89239 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.38 9.20 71.98 0.66 -4.71 16 2 C 0.21 11.11 2.55 44.17 0.11 11.22 16 3 H -0.03 -1.65 7.80 -2.38 -0.02 -1.67 16 4 C -0.54 -30.34 8.50 25.60 0.22 -30.12 16 5 H 0.06 3.12 7.68 -2.91 -0.02 3.10 16 6 C 0.01 0.80 5.36 84.65 0.45 1.26 16 7 N -0.92 -53.38 11.58 21.45 0.25 -53.13 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.68 -29.82 6.30 -495.47 -3.12 -32.94 16 13 C 0.07 2.57 5.27 86.30 0.46 3.02 16 14 C 0.06 1.66 3.72 31.25 0.12 1.78 16 15 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 16 C 0.03 0.72 7.54 72.64 0.55 1.27 16 17 O -0.39 -10.32 10.87 -126.22 -1.37 -11.69 16 18 C 0.25 6.45 1.03 30.57 0.03 6.48 16 19 C -0.12 -2.67 5.34 30.59 0.16 -2.51 16 20 C -0.11 -2.47 5.78 30.60 0.18 -2.29 16 21 C -0.12 -2.12 5.92 30.59 0.18 -1.94 16 22 C -0.11 -2.41 5.78 30.60 0.18 -2.23 16 23 C -0.13 -2.91 5.29 30.59 0.16 -2.75 16 24 O -0.38 -11.92 9.04 -126.22 -1.14 -13.06 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.03 1.28 7.35 -2.39 -0.02 1.26 16 27 H 0.05 2.72 6.44 -2.39 -0.02 2.71 16 28 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 29 H 0.33 15.09 7.94 -89.69 -0.71 14.38 16 30 H 0.02 0.69 8.05 -2.39 -0.02 0.67 16 31 H 0.09 2.96 7.36 -2.39 -0.02 2.94 16 32 H 0.08 1.83 8.03 -2.39 -0.02 1.81 16 33 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.30 7.69 -2.39 -0.02 1.28 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.33 7.69 -2.39 -0.02 1.31 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -62.12 333.86 0.35 -61.77 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.26 Total: 24.48 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 3.46 Total: -21.53 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.87 Total: -86.07 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -2.51 Total: -24.75 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -62.12 0.35 -61.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473596292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.729 kcal (2) G-P(sol) polarization free energy of solvation -62.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds