Wall clock time and date at job start Mon Mar 30 2020 01:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47271 * 2 1 4 4 C 1.36937 * 120.00173 * 269.20005 * 3 2 1 5 5 H 1.08001 * 119.99882 * 321.94891 * 4 3 2 6 6 C 1.38815 * 119.99750 * 141.94698 * 4 3 2 7 7 N 1.31620 * 119.99490 * 157.00709 * 6 4 3 8 8 Si 1.86791 * 120.00408 * 337.00702 * 6 4 3 9 9 H 1.48498 * 109.47568 * 95.67817 * 8 6 4 10 10 H 1.48499 * 109.47577 * 215.67931 * 8 6 4 11 11 H 1.48501 * 109.46991 * 335.67893 * 8 6 4 12 12 C 1.46501 * 119.99639 * 89.19247 * 3 2 1 13 13 C 1.53005 * 109.46589 * 90.00719 * 12 3 2 14 14 H 1.08997 * 109.48967 * 304.95260 * 13 12 3 15 15 C 1.53103 * 109.48617 * 184.89582 * 13 12 3 16 16 C 1.53178 * 109.24798 * 181.90407 * 15 13 12 17 17 C 1.53280 * 108.96756 * 57.49345 * 16 15 13 18 18 C 1.52474 * 109.23535 * 304.02536 * 17 16 15 19 19 C 1.54010 * 110.20070 * 178.50197 * 18 17 16 20 20 C 1.54598 * 103.89207 * 118.30544 * 19 18 17 21 21 O 1.44472 * 104.82724 * 23.86776 * 20 19 18 22 22 C 1.44551 * 105.35238 * 319.82349 * 21 20 19 23 23 O 1.42209 * 110.98570 * 55.95894 * 18 17 16 24 24 H 1.08999 * 109.47733 * 59.99703 * 1 2 3 25 25 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46697 * 299.99739 * 1 2 3 27 27 H 1.08999 * 109.47733 * 120.00297 * 2 1 3 28 28 H 1.09004 * 109.47029 * 240.00959 * 2 1 3 29 29 H 0.97003 * 119.99769 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47188 * 210.00089 * 12 3 2 31 31 H 1.08991 * 109.47611 * 330.00629 * 12 3 2 32 32 H 1.08997 * 109.50608 * 301.83446 * 15 13 12 33 33 H 1.08996 * 109.50367 * 61.96938 * 15 13 12 34 34 H 1.09005 * 109.55599 * 297.65252 * 16 15 13 35 35 H 1.08998 * 109.64153 * 177.39257 * 16 15 13 36 36 H 1.09004 * 109.51217 * 184.09442 * 17 16 15 37 37 H 1.09004 * 109.50565 * 63.94937 * 17 16 15 38 38 H 1.08997 * 110.54164 * 236.90577 * 19 18 17 39 39 H 1.08999 * 110.54325 * 359.70543 * 19 18 17 40 40 H 1.09001 * 110.36821 * 142.70042 * 20 19 18 41 41 H 1.08998 * 110.36769 * 265.02819 * 20 19 18 42 42 H 1.08995 * 110.39386 * 281.23209 * 22 21 20 43 43 H 1.09000 * 110.38558 * 158.84369 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2622 2.0213 -1.1858 5 1 2.6941 1.4784 -2.0136 6 6 1.9543 3.3678 -1.3238 7 7 2.5665 4.0926 -2.2361 8 14 0.6713 4.1510 -0.2149 9 1 1.3441 4.8019 0.9378 10 1 -0.0913 5.1685 -0.9819 11 1 -0.2591 3.1052 0.2810 12 6 2.2456 2.0777 1.2687 13 6 3.6847 1.8394 1.7304 14 1 3.8770 0.7678 1.7833 15 6 3.8873 2.4639 3.1136 16 6 5.3420 2.2637 3.5498 17 6 6.2675 2.8886 2.4999 18 6 5.9626 2.2799 1.1356 19 6 6.8556 2.9198 0.0562 20 6 7.6847 1.7348 -0.4900 21 8 6.8915 0.5631 -0.1986 22 6 6.3460 0.7887 1.1209 23 8 4.5899 2.4413 0.8011 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 2.3516 5.0336 -2.3323 30 1 2.0805 3.1463 1.1312 31 1 1.5549 1.6971 2.0210 32 1 3.6644 3.5298 3.0678 33 1 3.2226 1.9828 3.8310 34 1 5.5540 1.1979 3.6349 35 1 5.5051 2.7463 4.5135 36 1 7.3058 2.6881 2.7643 37 1 6.1018 3.9654 2.4633 38 1 6.2460 3.3568 -0.7347 39 1 7.5089 3.6727 0.4972 40 1 7.8296 1.8370 -1.5655 41 1 8.6466 1.6781 0.0195 42 1 7.0974 0.5821 1.8829 43 1 5.4637 0.1682 1.2782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559511514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:01 Heat of formation + Delta-G solvation = -67.680540 kcal Electronic energy + Delta-G solvation = -23067.802348 eV Core-core repulsion = 19920.852342 eV Total energy + Delta-G solvation = -3146.950007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22332 -37.54160 -35.83583 -33.23636 -32.35085 -31.71419 -30.01085 -28.90939 -27.34007 -25.42817 -23.68341 -23.03679 -22.33678 -20.85078 -19.85473 -19.06040 -16.79459 -16.50091 -15.78245 -15.61680 -15.13479 -14.73945 -14.48577 -14.16306 -13.79507 -13.56331 -13.12174 -12.88611 -12.77516 -12.32293 -12.19720 -11.99811 -11.71159 -11.54174 -11.36636 -11.25112 -11.05450 -10.86186 -10.79329 -10.75258 -10.61971 -10.25137 -10.03387 -9.91727 -9.56554 -9.42815 -9.36208 -8.62688 -8.31106 -6.68438 -5.80120 -3.18723 3.40051 3.54945 3.59619 4.17815 4.31034 4.67962 4.79921 4.90419 4.98860 5.09809 5.19998 5.26102 5.35788 5.40388 5.51845 5.56921 5.61822 5.71200 5.82587 5.87089 5.94099 5.97864 5.98057 6.07820 6.13566 6.17337 6.19894 6.24189 6.34531 6.38485 6.49581 6.51548 6.56989 6.58912 6.82312 6.89427 7.05946 7.12179 8.09822 8.24931 8.58289 9.14617 9.90726 10.28804 11.36392 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.008024 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.506720 B = 3488.875889 C = 3642.487263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.145 3.855 3 N -0.598 5.598 4 C -0.244 4.244 5 H 0.074 0.926 6 C 0.043 3.957 7 N -0.898 5.898 8 Si 0.866 3.134 9 H -0.289 1.289 10 H -0.305 1.305 11 H -0.269 1.269 12 C 0.144 3.856 13 C 0.071 3.929 14 H 0.049 0.951 15 C -0.156 4.156 16 C -0.119 4.119 17 C -0.138 4.138 18 C 0.085 3.915 19 C -0.143 4.143 20 C 0.049 3.951 21 O -0.367 6.367 22 C 0.026 3.974 23 O -0.310 6.310 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.258 0.742 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 -4.197 11.135 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 N -0.320 5.320 4 C -0.373 4.373 5 H 0.092 0.908 6 C -0.157 4.157 7 N -0.540 5.540 8 Si 0.697 3.303 9 H -0.217 1.217 10 H -0.233 1.233 11 H -0.194 1.194 12 C 0.018 3.982 13 C 0.011 3.989 14 H 0.067 0.933 15 C -0.194 4.194 16 C -0.157 4.157 17 C -0.176 4.176 18 C 0.044 3.956 19 C -0.180 4.180 20 C -0.028 4.028 21 O -0.285 6.285 22 C -0.051 4.051 23 O -0.228 6.228 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.216 -4.148 10.703 13.558 hybrid contribution -0.603 0.752 1.109 1.469 sum 6.614 -3.396 11.811 13.956 Atomic orbital electron populations 1.22352 0.99835 0.99067 1.01579 1.20866 0.91586 0.86786 0.98881 1.44065 1.75005 1.11071 1.01842 1.18603 1.34750 0.93243 0.90669 0.90796 1.25330 0.97719 0.96630 0.95979 1.69896 1.40941 1.06606 1.36565 0.87090 0.84264 0.78799 0.80181 1.21699 1.23312 1.19435 1.21263 0.90437 0.98123 0.88414 1.23041 0.93422 0.95408 0.87047 0.93333 1.22278 0.96239 1.02437 0.98490 1.21593 0.95349 1.00600 0.98129 1.22096 0.99265 1.01287 0.94963 1.22265 0.86103 0.93565 0.93669 1.22893 0.97525 0.98132 0.99458 1.23389 0.93365 0.84694 1.01367 1.89173 1.66625 1.39628 1.33098 1.23992 0.98403 0.97377 0.85368 1.88351 1.11409 1.76132 1.46897 0.92499 0.94385 0.94207 0.94860 0.92964 0.93219 0.92071 0.93083 0.91263 0.91439 0.92142 0.91949 0.91469 0.90921 0.88077 0.90403 0.89025 0.93034 0.92677 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.24 37.16 0.38 -2.78 16 2 C 0.14 2.94 6.39 -4.04 -0.03 2.91 16 3 N -0.60 -14.35 2.05 -173.23 -0.35 -14.70 16 4 C -0.24 -6.93 9.40 -15.06 -0.14 -7.07 16 5 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.04 1.26 5.29 -17.43 -0.09 1.17 16 7 N -0.90 -27.93 13.97 55.49 0.78 -27.15 16 8 Si 0.87 22.61 25.11 -169.99 -4.27 18.35 16 9 H -0.29 -7.38 6.68 56.52 0.38 -7.01 16 10 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.14 3.14 4.23 -4.04 -0.02 3.12 16 13 C 0.07 1.37 2.64 -26.68 -0.07 1.30 16 14 H 0.05 0.90 6.22 -51.93 -0.32 0.58 16 15 C -0.16 -2.40 5.40 -26.59 -0.14 -2.54 16 16 C -0.12 -1.53 5.83 -26.49 -0.15 -1.69 16 17 C -0.14 -1.90 4.58 -26.86 -0.12 -2.03 16 18 C 0.09 1.46 1.04 -89.85 -0.09 1.36 16 19 C -0.14 -2.33 6.53 -25.36 -0.17 -2.49 16 20 C 0.05 0.74 7.64 38.00 0.29 1.03 16 21 O -0.37 -6.78 11.66 -35.23 -0.41 -7.19 16 22 C 0.03 0.42 5.90 37.67 0.22 0.64 16 23 O -0.31 -6.76 9.30 -35.23 -0.33 -7.09 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.05 1.08 8.03 -51.93 -0.42 0.67 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.06 1.50 3.39 -51.93 -0.18 1.32 16 31 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.73 7.58 -51.93 -0.39 0.33 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.10 2.01 7.99 -51.93 -0.41 1.59 16 39 H 0.08 1.04 7.71 -51.93 -0.40 0.64 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.75 7.76 -51.93 -0.40 0.34 16 43 H 0.09 1.62 6.00 -51.93 -0.31 1.31 16 LS Contribution 326.59 15.07 4.92 4.92 Total: -1.00 -32.31 326.59 -7.28 -39.59 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.48 Total: 0.34 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.13 Total: -7.07 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.42 Total: -41.86 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.74 Total: -14.27 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.27 Total: 18.35 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.31 -7.28 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559511514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.092 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds