Wall clock time and date at job start Mon Mar 30 2020 01:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47271 * 2 1 4 4 C 1.36937 * 120.00173 * 269.20005 * 3 2 1 5 5 H 1.08001 * 119.99882 * 321.94891 * 4 3 2 6 6 C 1.38815 * 119.99750 * 141.94698 * 4 3 2 7 7 N 1.31620 * 119.99490 * 157.00709 * 6 4 3 8 8 Si 1.86791 * 120.00408 * 337.00702 * 6 4 3 9 9 H 1.48498 * 109.47568 * 95.67817 * 8 6 4 10 10 H 1.48499 * 109.47577 * 215.67931 * 8 6 4 11 11 H 1.48501 * 109.46991 * 335.67893 * 8 6 4 12 12 C 1.46501 * 119.99639 * 89.19247 * 3 2 1 13 13 C 1.53005 * 109.46589 * 90.00719 * 12 3 2 14 14 H 1.08997 * 109.48967 * 304.95260 * 13 12 3 15 15 C 1.53103 * 109.48617 * 184.89582 * 13 12 3 16 16 C 1.53178 * 109.24798 * 181.90407 * 15 13 12 17 17 C 1.53280 * 108.96756 * 57.49345 * 16 15 13 18 18 C 1.52474 * 109.23535 * 304.02536 * 17 16 15 19 19 C 1.54010 * 110.20070 * 178.50197 * 18 17 16 20 20 C 1.54598 * 103.89207 * 118.30544 * 19 18 17 21 21 O 1.44472 * 104.82724 * 23.86776 * 20 19 18 22 22 C 1.44551 * 105.35238 * 319.82349 * 21 20 19 23 23 O 1.42209 * 110.98570 * 55.95894 * 18 17 16 24 24 H 1.08999 * 109.47733 * 59.99703 * 1 2 3 25 25 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46697 * 299.99739 * 1 2 3 27 27 H 1.08999 * 109.47733 * 120.00297 * 2 1 3 28 28 H 1.09004 * 109.47029 * 240.00959 * 2 1 3 29 29 H 0.97003 * 119.99769 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47188 * 210.00089 * 12 3 2 31 31 H 1.08991 * 109.47611 * 330.00629 * 12 3 2 32 32 H 1.08997 * 109.50608 * 301.83446 * 15 13 12 33 33 H 1.08996 * 109.50367 * 61.96938 * 15 13 12 34 34 H 1.09005 * 109.55599 * 297.65252 * 16 15 13 35 35 H 1.08998 * 109.64153 * 177.39257 * 16 15 13 36 36 H 1.09004 * 109.51217 * 184.09442 * 17 16 15 37 37 H 1.09004 * 109.50565 * 63.94937 * 17 16 15 38 38 H 1.08997 * 110.54164 * 236.90577 * 19 18 17 39 39 H 1.08999 * 110.54325 * 359.70543 * 19 18 17 40 40 H 1.09001 * 110.36821 * 142.70042 * 20 19 18 41 41 H 1.08998 * 110.36769 * 265.02819 * 20 19 18 42 42 H 1.08995 * 110.39386 * 281.23209 * 22 21 20 43 43 H 1.09000 * 110.38558 * 158.84369 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2622 2.0213 -1.1858 5 1 2.6941 1.4784 -2.0136 6 6 1.9543 3.3678 -1.3238 7 7 2.5665 4.0926 -2.2361 8 14 0.6713 4.1510 -0.2149 9 1 1.3441 4.8019 0.9378 10 1 -0.0913 5.1685 -0.9819 11 1 -0.2591 3.1052 0.2810 12 6 2.2456 2.0777 1.2687 13 6 3.6847 1.8394 1.7304 14 1 3.8770 0.7678 1.7833 15 6 3.8873 2.4639 3.1136 16 6 5.3420 2.2637 3.5498 17 6 6.2675 2.8886 2.4999 18 6 5.9626 2.2799 1.1356 19 6 6.8556 2.9198 0.0562 20 6 7.6847 1.7348 -0.4900 21 8 6.8915 0.5631 -0.1986 22 6 6.3460 0.7887 1.1209 23 8 4.5899 2.4413 0.8011 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 2.3516 5.0336 -2.3323 30 1 2.0805 3.1463 1.1312 31 1 1.5549 1.6971 2.0210 32 1 3.6644 3.5298 3.0678 33 1 3.2226 1.9828 3.8310 34 1 5.5540 1.1979 3.6349 35 1 5.5051 2.7463 4.5135 36 1 7.3058 2.6881 2.7643 37 1 6.1018 3.9654 2.4633 38 1 6.2460 3.3568 -0.7347 39 1 7.5089 3.6727 0.4972 40 1 7.8296 1.8370 -1.5655 41 1 8.6466 1.6781 0.0195 42 1 7.0974 0.5821 1.8829 43 1 5.4637 0.1682 1.2782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559511514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:01 Heat of formation + Delta-G solvation = -89.883666 kcal Electronic energy + Delta-G solvation = -23068.765148 eV Core-core repulsion = 19920.852342 eV Total energy + Delta-G solvation = -3147.912806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52691 -38.98143 -37.54770 -34.49359 -33.93861 -33.65966 -31.52210 -30.39917 -28.82459 -26.89688 -25.55025 -24.26937 -23.72683 -22.16369 -21.66116 -20.32935 -18.76211 -17.97382 -17.34735 -16.89959 -16.52770 -16.34891 -16.11466 -15.41434 -15.28699 -15.18013 -14.81168 -14.48192 -14.09693 -13.97148 -13.67501 -13.39584 -13.32562 -13.06735 -12.83802 -12.65606 -12.62263 -12.34406 -12.28724 -12.17062 -11.95336 -11.81659 -11.61431 -11.52631 -11.46919 -11.02523 -10.65303 -10.51243 -9.98367 -8.66884 -8.07784 -5.42474 1.29719 1.39555 1.50586 2.49327 2.86324 3.05015 3.11429 3.47347 3.58291 3.83296 3.93127 3.96261 4.12202 4.16454 4.19193 4.27680 4.36407 4.40520 4.44543 4.54891 4.64328 4.72688 4.75530 4.76783 4.81892 4.82331 4.85449 5.00195 5.01987 5.05283 5.10278 5.14674 5.18848 5.26522 5.27974 5.44640 5.54558 5.82957 6.04925 6.26910 6.76420 7.10760 7.75446 8.15569 9.13334 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.008024 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.506720 B = 3488.875889 C = 3642.487263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 N -0.611 5.611 4 C -0.224 4.224 5 H 0.023 0.977 6 C -0.013 4.013 7 N -0.950 5.950 8 Si 0.934 3.066 9 H -0.281 1.281 10 H -0.315 1.315 11 H -0.253 1.253 12 C 0.136 3.864 13 C 0.071 3.929 14 H 0.054 0.946 15 C -0.151 4.151 16 C -0.114 4.114 17 C -0.132 4.132 18 C 0.073 3.927 19 C -0.145 4.145 20 C 0.049 3.951 21 O -0.404 6.404 22 C 0.029 3.971 23 O -0.363 6.363 24 H 0.028 0.972 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.255 0.745 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -5.273 15.016 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 N -0.333 5.333 4 C -0.354 4.354 5 H 0.041 0.959 6 C -0.208 4.208 7 N -0.595 5.595 8 Si 0.764 3.236 9 H -0.209 1.209 10 H -0.244 1.244 11 H -0.177 1.177 12 C 0.011 3.989 13 C 0.012 3.988 14 H 0.072 0.928 15 C -0.190 4.190 16 C -0.151 4.151 17 C -0.170 4.170 18 C 0.033 3.967 19 C -0.182 4.182 20 C -0.027 4.027 21 O -0.323 6.323 22 C -0.048 4.048 23 O -0.282 6.282 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.722 -5.259 14.631 17.359 hybrid contribution -0.680 0.984 -0.165 1.207 sum 7.041 -4.275 14.466 16.647 Atomic orbital electron populations 1.22221 0.98061 1.01136 1.00445 1.21011 0.92935 0.84803 0.99747 1.44160 1.75743 1.12223 1.01211 1.18309 1.32816 0.93032 0.91277 0.95889 1.25874 0.99638 0.97291 0.98040 1.70045 1.43032 1.06812 1.39579 0.85987 0.81446 0.77865 0.78302 1.20866 1.24409 1.17681 1.21404 0.93311 0.96275 0.87946 1.22926 0.91334 0.95932 0.88634 0.92815 1.22229 0.99003 1.01227 0.96495 1.21608 0.92935 1.01811 0.98765 1.22071 1.01493 1.00452 0.92991 1.22586 0.83936 0.94564 0.95634 1.22932 0.97651 0.99346 0.98283 1.23558 0.94355 0.83045 1.01764 1.89123 1.67530 1.40998 1.34646 1.24072 0.98927 0.96386 0.85366 1.88271 1.14050 1.76901 1.49013 0.95252 0.90743 0.93587 0.91595 0.94508 0.93580 0.94900 0.89891 0.92871 0.88869 0.90629 0.89126 0.88138 0.91896 0.93296 0.87186 0.89548 0.88836 0.88841 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.62 10.24 71.98 0.74 -4.88 16 2 C 0.14 5.53 6.39 86.38 0.55 6.08 16 3 N -0.61 -29.41 2.05 -701.99 -1.44 -30.85 16 4 C -0.22 -13.33 9.40 84.03 0.79 -12.54 16 5 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 6 C -0.01 -0.79 5.29 84.86 0.45 -0.34 16 7 N -0.95 -62.45 13.97 21.65 0.30 -62.15 16 8 Si 0.93 48.26 25.11 68.60 1.72 49.98 16 9 H -0.28 -14.00 6.68 99.48 0.66 -13.34 16 10 H -0.31 -16.60 7.11 99.48 0.71 -15.90 16 11 H -0.25 -12.20 7.11 99.48 0.71 -11.49 16 12 C 0.14 5.76 4.23 86.38 0.37 6.12 16 13 C 0.07 2.64 2.64 30.63 0.08 2.72 16 14 H 0.05 1.90 6.22 -2.39 -0.01 1.88 16 15 C -0.15 -4.18 5.40 30.69 0.17 -4.01 16 16 C -0.11 -2.42 5.83 30.75 0.18 -2.24 16 17 C -0.13 -3.20 4.58 30.51 0.14 -3.06 16 18 C 0.07 2.42 1.04 -10.30 -0.01 2.41 16 19 C -0.14 -4.75 6.53 31.48 0.21 -4.54 16 20 C 0.05 1.44 7.64 72.53 0.55 2.00 16 21 O -0.40 -14.77 11.66 -148.98 -1.74 -16.51 16 22 C 0.03 0.89 5.90 72.31 0.43 1.32 16 23 O -0.36 -16.07 9.30 -148.98 -1.39 -17.46 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 28 H 0.04 1.54 8.03 -2.38 -0.02 1.52 16 29 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 30 H 0.03 1.59 3.39 -2.39 -0.01 1.58 16 31 H 0.08 2.93 8.07 -2.39 -0.02 2.91 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 34 H 0.08 1.42 7.58 -2.38 -0.02 1.40 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.78 8.03 -2.38 -0.02 1.76 16 37 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.05 2.10 7.99 -2.39 -0.02 2.08 16 39 H 0.11 2.78 7.71 -2.39 -0.02 2.76 16 40 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.09 2.13 7.76 -2.39 -0.02 2.11 16 43 H 0.08 2.64 6.00 -2.39 -0.01 2.62 16 Total: -1.00 -76.09 326.59 3.02 -73.07 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.92 Total: 14.89 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.63 Total: -10.98 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -1.13 Total: -93.00 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -3.12 Total: -33.97 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.72 Total: 49.98 kcal Total: -76.09 3.02 -73.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559511514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.816 kcal (2) G-P(sol) polarization free energy of solvation -76.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds