Wall clock time and date at job start Mon Mar 30 2020 00:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47250 * 240.00198 * 2 1 3 5 5 N 1.46502 * 109.47132 * 61.56419 * 4 2 1 6 6 C 1.36934 * 120.00370 * 263.82978 * 5 4 2 7 7 H 1.07999 * 119.99748 * 10.72298 * 6 5 4 8 8 C 1.38811 * 120.00172 * 190.72764 * 6 5 4 9 9 N 1.31613 * 119.99849 * 23.55043 * 8 6 5 10 10 Si 1.86805 * 119.99869 * 203.54561 * 8 6 5 11 11 H 1.48504 * 109.46490 * 90.00308 * 10 8 6 12 12 H 1.48497 * 109.47157 * 209.99774 * 10 8 6 13 13 H 1.48500 * 109.47119 * 330.00336 * 10 8 6 14 14 C 1.46505 * 119.99718 * 83.83059 * 5 4 2 15 15 C 1.50699 * 109.47096 * 91.80736 * 14 5 4 16 16 O 1.20820 * 120.00099 * 1.26502 * 15 14 5 17 17 O 1.34230 * 119.99874 * 181.27426 * 15 14 5 18 18 C 1.52998 * 109.47477 * 120.00070 * 2 1 3 19 19 C 1.53001 * 109.46984 * 300.00290 * 18 2 1 20 20 C 1.52998 * 109.47338 * 180.02562 * 19 18 2 21 21 C 1.53003 * 109.47407 * 59.99537 * 20 19 18 22 22 C 1.53001 * 109.47250 * 300.00517 * 21 20 19 23 23 C 1.53004 * 109.47144 * 180.02562 * 18 2 1 24 24 H 1.08998 * 109.47301 * 62.62667 * 1 2 3 25 25 H 1.09002 * 109.46708 * 182.62423 * 1 2 3 26 26 H 1.08996 * 109.47227 * 302.61593 * 1 2 3 27 27 H 1.08996 * 109.47215 * 181.56395 * 4 2 1 28 28 H 1.08998 * 109.47063 * 301.56792 * 4 2 1 29 29 H 0.97008 * 119.99865 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.47127 * 211.80702 * 14 5 4 31 31 H 1.09003 * 109.46896 * 331.80137 * 14 5 4 32 32 H 0.96697 * 117.00007 * 180.02562 * 17 15 14 33 33 H 1.09001 * 109.47042 * 59.99930 * 18 2 1 34 34 H 1.09001 * 109.46937 * 299.99705 * 19 18 2 35 35 H 1.08997 * 109.47583 * 59.99895 * 19 18 2 36 36 H 1.09001 * 109.46759 * 299.99684 * 20 19 18 37 37 H 1.08994 * 109.47588 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47639 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.46570 * 60.00136 * 21 20 19 40 40 H 1.09001 * 109.46937 * 299.99866 * 22 21 20 41 41 H 1.08996 * 109.47119 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.46457 * 299.99508 * 23 18 2 43 43 H 1.08991 * 109.47056 * 60.00060 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.5828 -0.0091 -2.4451 6 6 0.4507 -0.4209 -3.0963 7 1 -0.1989 -1.1529 -2.6396 8 6 0.1382 0.1024 -4.3434 9 7 1.0880 0.6064 -5.1024 10 14 -1.6305 0.0910 -4.9445 11 1 -2.3039 1.3462 -4.5245 12 1 -1.6492 -0.0089 -6.4260 13 1 -2.3442 -1.0730 -4.3607 14 6 2.3367 1.1436 -2.9444 15 6 3.3473 0.6804 -3.9618 16 8 3.4139 -0.4890 -4.2581 17 8 4.1736 1.5670 -4.5388 18 6 2.0401 -0.7212 1.2492 19 6 1.5301 0.0000 2.4984 20 6 2.0406 -0.7208 3.7477 21 6 3.5707 -0.7203 3.7474 22 6 4.0807 -1.4415 2.4981 23 6 3.5702 -0.7206 1.2494 24 1 -0.3634 0.4725 -0.9126 25 1 -0.3633 -1.0266 0.0471 26 1 -0.3633 0.5539 0.8656 27 1 3.1297 -0.7456 -1.2353 28 1 1.6540 -1.7404 -1.2635 29 1 0.8696 0.9717 -5.9741 30 1 1.6513 1.8522 -3.4095 31 1 2.8519 1.6277 -2.1147 32 1 4.8045 1.2227 -5.1856 33 1 1.6768 -1.7489 1.2492 34 1 1.8934 1.0276 2.4984 35 1 0.4401 -0.0001 2.4985 36 1 1.6777 -1.7486 3.7479 37 1 1.6770 -0.2074 4.6377 38 1 3.9344 -1.2342 4.6371 39 1 3.9335 0.3075 3.7471 40 1 3.7177 -2.4693 2.4983 41 1 5.1707 -1.4407 2.4977 42 1 3.9337 -1.2343 0.3594 43 1 3.9330 0.3071 1.2497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592592649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:08 Heat of formation + Delta-G solvation = -99.593841 kcal Electronic energy + Delta-G solvation = -22111.760384 eV Core-core repulsion = 18963.426513 eV Total energy + Delta-G solvation = -3148.333871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.03166 -38.46070 -36.08962 -34.43006 -33.44800 -31.03972 -30.64370 -28.71343 -27.13344 -26.01921 -23.21297 -22.32611 -21.63508 -20.25093 -19.64202 -18.97118 -16.79916 -16.55872 -15.63076 -15.00050 -14.94649 -14.47177 -14.03847 -14.00112 -13.69336 -13.47608 -13.32890 -12.95923 -12.78337 -12.20902 -11.98080 -11.63966 -11.45622 -11.21013 -11.10272 -11.01978 -10.86659 -10.72462 -10.70017 -10.54734 -10.30364 -10.13977 -10.01132 -9.92845 -9.80572 -9.59480 -9.48514 -8.98726 -8.49157 -7.01008 -5.88296 -3.15239 3.38051 3.45130 3.46793 4.06645 4.38811 4.66726 4.80000 4.87097 4.89911 5.24045 5.33196 5.38757 5.43924 5.60379 5.63540 5.66070 5.68753 5.74842 5.82882 6.06658 6.08663 6.14823 6.18156 6.24522 6.28579 6.37222 6.40865 6.44388 6.45574 6.58567 6.64337 6.76942 6.81041 7.03167 7.09332 7.14259 7.20293 7.74435 8.00339 8.22095 9.08789 9.58230 9.80220 10.20110 11.23706 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.005783 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.267801 B = 4840.861269 C = 5846.459115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.060 0.940 4 C 0.153 3.847 5 N -0.569 5.569 6 C -0.242 4.242 7 H 0.081 0.919 8 C -0.004 4.004 9 N -0.906 5.906 10 Si 0.907 3.093 11 H -0.288 1.288 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.195 3.805 15 C 0.480 3.520 16 O -0.516 6.516 17 O -0.548 6.548 18 C -0.079 4.079 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.117 4.117 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.256 0.744 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.377 0.623 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 0.715 14.024 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.079 0.921 4 C 0.026 3.974 5 N -0.288 5.288 6 C -0.371 4.371 7 H 0.099 0.901 8 C -0.201 4.201 9 N -0.552 5.552 10 Si 0.737 3.263 11 H -0.215 1.215 12 H -0.221 1.221 13 H -0.206 1.206 14 C 0.065 3.935 15 C 0.320 3.680 16 O -0.401 6.401 17 O -0.359 6.359 18 C -0.098 4.098 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.155 4.155 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.233 0.767 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.608 0.559 14.073 14.539 hybrid contribution -0.423 -0.335 -1.125 1.247 sum 3.185 0.224 12.948 13.336 Atomic orbital electron populations 1.21795 0.95250 1.00762 1.01759 1.21735 0.96492 0.99577 0.94596 0.92128 1.20926 0.96176 0.94687 0.85578 1.44025 1.26463 1.31803 1.26509 1.19294 0.96495 1.22042 0.99245 0.90080 1.24736 0.97856 1.01988 0.95478 1.69727 1.29865 1.45508 1.10144 0.86190 0.84752 0.77854 0.77491 1.21469 1.22057 1.20557 1.20217 0.91138 0.90858 0.91282 1.25198 0.77591 0.84194 0.81041 1.90486 1.67682 1.20270 1.61680 1.84636 1.48584 1.46362 1.56277 1.21160 0.94623 0.99553 0.94440 1.21624 1.00437 0.99129 0.93930 1.21540 0.95536 1.00648 0.97929 1.21526 0.95931 1.00527 0.97577 1.21532 0.99716 0.99424 0.94982 1.21646 0.95872 1.00552 0.97401 0.90286 0.94000 0.94600 0.94598 0.93121 0.93353 0.87742 0.93278 0.76733 0.91694 0.92355 0.91819 0.92316 0.92670 0.92750 0.92260 0.92272 0.92548 0.91519 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.37 37.16 0.31 -2.00 16 2 C -0.10 -1.68 2.20 -90.62 -0.20 -1.88 16 3 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 4 C 0.15 3.04 4.85 -4.04 -0.02 3.02 16 5 N -0.57 -13.49 1.72 -174.61 -0.30 -13.79 16 6 C -0.24 -6.34 7.94 -15.06 -0.12 -6.46 16 7 H 0.08 2.10 7.92 -52.49 -0.42 1.68 16 8 C 0.00 -0.10 4.91 -17.43 -0.09 -0.18 16 9 N -0.91 -25.79 8.58 55.49 0.48 -25.31 16 10 Si 0.91 21.60 29.61 -169.99 -5.03 16.57 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.19 4.54 5.58 -5.19 -0.03 4.51 16 15 C 0.48 11.84 6.26 36.01 0.23 12.07 16 16 O -0.52 -14.58 16.55 -18.75 -0.31 -14.89 16 17 O -0.55 -11.54 13.42 -39.26 -0.53 -12.07 16 18 C -0.08 -1.06 1.78 -90.62 -0.16 -1.22 16 19 C -0.11 -1.35 4.85 -26.73 -0.13 -1.48 16 20 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 21 C -0.12 -1.19 5.92 -26.73 -0.16 -1.34 16 22 C -0.12 -1.30 5.92 -26.75 -0.16 -1.46 16 23 C -0.12 -1.50 4.85 -26.75 -0.13 -1.63 16 24 H 0.08 1.54 6.45 -51.93 -0.33 1.21 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 27 H 0.04 0.71 6.32 -51.93 -0.33 0.38 16 28 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.10 2.62 6.55 -51.93 -0.34 2.28 16 31 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 32 H 0.38 6.45 9.10 45.56 0.41 6.87 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.76 6.49 -51.93 -0.34 0.43 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.93 6.39 -51.93 -0.33 0.60 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -30.60 330.26 -8.16 -38.76 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.63 Total: 5.20 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.81 Total: 0.54 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.18 Total: -39.10 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.84 Total: -26.96 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.60 -8.16 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592592649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.830 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds