Wall clock time and date at job start Mon Mar 30 2020 00:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47250 * 240.00198 * 2 1 3 5 5 N 1.46502 * 109.47132 * 61.56419 * 4 2 1 6 6 C 1.36934 * 120.00370 * 263.82978 * 5 4 2 7 7 H 1.07999 * 119.99748 * 10.72298 * 6 5 4 8 8 C 1.38811 * 120.00172 * 190.72764 * 6 5 4 9 9 N 1.31613 * 119.99849 * 23.55043 * 8 6 5 10 10 Si 1.86805 * 119.99869 * 203.54561 * 8 6 5 11 11 H 1.48504 * 109.46490 * 90.00308 * 10 8 6 12 12 H 1.48497 * 109.47157 * 209.99774 * 10 8 6 13 13 H 1.48500 * 109.47119 * 330.00336 * 10 8 6 14 14 C 1.46505 * 119.99718 * 83.83059 * 5 4 2 15 15 C 1.50699 * 109.47096 * 91.80736 * 14 5 4 16 16 O 1.20820 * 120.00099 * 1.26502 * 15 14 5 17 17 O 1.34230 * 119.99874 * 181.27426 * 15 14 5 18 18 C 1.52998 * 109.47477 * 120.00070 * 2 1 3 19 19 C 1.53001 * 109.46984 * 300.00290 * 18 2 1 20 20 C 1.52998 * 109.47338 * 180.02562 * 19 18 2 21 21 C 1.53003 * 109.47407 * 59.99537 * 20 19 18 22 22 C 1.53001 * 109.47250 * 300.00517 * 21 20 19 23 23 C 1.53004 * 109.47144 * 180.02562 * 18 2 1 24 24 H 1.08998 * 109.47301 * 62.62667 * 1 2 3 25 25 H 1.09002 * 109.46708 * 182.62423 * 1 2 3 26 26 H 1.08996 * 109.47227 * 302.61593 * 1 2 3 27 27 H 1.08996 * 109.47215 * 181.56395 * 4 2 1 28 28 H 1.08998 * 109.47063 * 301.56792 * 4 2 1 29 29 H 0.97008 * 119.99865 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.47127 * 211.80702 * 14 5 4 31 31 H 1.09003 * 109.46896 * 331.80137 * 14 5 4 32 32 H 0.96697 * 117.00007 * 180.02562 * 17 15 14 33 33 H 1.09001 * 109.47042 * 59.99930 * 18 2 1 34 34 H 1.09001 * 109.46937 * 299.99705 * 19 18 2 35 35 H 1.08997 * 109.47583 * 59.99895 * 19 18 2 36 36 H 1.09001 * 109.46759 * 299.99684 * 20 19 18 37 37 H 1.08994 * 109.47588 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47639 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.46570 * 60.00136 * 21 20 19 40 40 H 1.09001 * 109.46937 * 299.99866 * 22 21 20 41 41 H 1.08996 * 109.47119 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.46457 * 299.99508 * 23 18 2 43 43 H 1.08991 * 109.47056 * 60.00060 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.5828 -0.0091 -2.4451 6 6 0.4507 -0.4209 -3.0963 7 1 -0.1989 -1.1529 -2.6396 8 6 0.1382 0.1024 -4.3434 9 7 1.0880 0.6064 -5.1024 10 14 -1.6305 0.0910 -4.9445 11 1 -2.3039 1.3462 -4.5245 12 1 -1.6492 -0.0089 -6.4260 13 1 -2.3442 -1.0730 -4.3607 14 6 2.3367 1.1436 -2.9444 15 6 3.3473 0.6804 -3.9618 16 8 3.4139 -0.4890 -4.2581 17 8 4.1736 1.5670 -4.5388 18 6 2.0401 -0.7212 1.2492 19 6 1.5301 0.0000 2.4984 20 6 2.0406 -0.7208 3.7477 21 6 3.5707 -0.7203 3.7474 22 6 4.0807 -1.4415 2.4981 23 6 3.5702 -0.7206 1.2494 24 1 -0.3634 0.4725 -0.9126 25 1 -0.3633 -1.0266 0.0471 26 1 -0.3633 0.5539 0.8656 27 1 3.1297 -0.7456 -1.2353 28 1 1.6540 -1.7404 -1.2635 29 1 0.8696 0.9717 -5.9741 30 1 1.6513 1.8522 -3.4095 31 1 2.8519 1.6277 -2.1147 32 1 4.8045 1.2227 -5.1856 33 1 1.6768 -1.7489 1.2492 34 1 1.8934 1.0276 2.4984 35 1 0.4401 -0.0001 2.4985 36 1 1.6777 -1.7486 3.7479 37 1 1.6770 -0.2074 4.6377 38 1 3.9344 -1.2342 4.6371 39 1 3.9335 0.3075 3.7471 40 1 3.7177 -2.4693 2.4983 41 1 5.1707 -1.4407 2.4977 42 1 3.9337 -1.2343 0.3594 43 1 3.9330 0.3071 1.2497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592592649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:08 Heat of formation + Delta-G solvation = -116.195314 kcal Electronic energy + Delta-G solvation = -22112.480278 eV Core-core repulsion = 18963.426513 eV Total energy + Delta-G solvation = -3149.053765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56784 -39.94199 -37.70288 -36.26305 -34.99354 -32.81653 -31.63048 -29.99934 -28.87228 -27.70893 -24.73756 -23.44727 -22.96717 -21.92930 -20.62234 -20.38996 -18.74332 -18.45013 -17.18833 -16.83414 -16.36448 -15.95619 -15.70158 -15.16931 -15.10219 -14.89860 -14.70320 -14.15959 -14.13169 -13.55078 -13.33104 -13.24269 -13.03748 -12.84285 -12.54666 -12.46187 -12.20460 -12.11673 -12.06651 -11.88883 -11.85811 -11.80356 -11.60242 -11.37957 -11.17349 -11.05280 -10.68584 -10.62856 -10.47122 -8.92961 -7.92923 -5.19519 1.48079 1.49898 1.57471 2.12401 2.50712 2.84957 3.27934 3.60534 3.87367 3.93400 4.02101 4.19588 4.38488 4.51307 4.57685 4.58686 4.63059 4.70137 4.75993 4.84952 4.86353 4.91549 5.02454 5.11456 5.13372 5.20282 5.23212 5.30742 5.30960 5.36407 5.39736 5.47455 5.48724 5.59300 5.61655 5.66462 5.76643 5.82450 6.21497 6.25065 7.07642 7.67922 7.88591 8.22055 9.17198 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.005783 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.267801 B = 4840.861269 C = 5846.459115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 H 0.060 0.940 4 C 0.154 3.846 5 N -0.580 5.580 6 C -0.237 4.237 7 H 0.079 0.921 8 C -0.056 4.056 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.282 1.282 12 H -0.306 1.306 13 H -0.274 1.274 14 C 0.195 3.805 15 C 0.484 3.516 16 O -0.559 6.559 17 O -0.538 6.538 18 C -0.072 4.072 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.116 4.116 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.247 0.753 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.397 0.603 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.961 1.090 16.165 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.111 4.111 3 H 0.079 0.921 4 C 0.029 3.971 5 N -0.299 5.299 6 C -0.367 4.367 7 H 0.097 0.903 8 C -0.250 4.250 9 N -0.581 5.581 10 Si 0.795 3.205 11 H -0.208 1.208 12 H -0.233 1.233 13 H -0.199 1.199 14 C 0.065 3.935 15 C 0.325 3.675 16 O -0.448 6.448 17 O -0.349 6.349 18 C -0.091 4.091 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.154 4.154 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.651 0.945 16.249 16.681 hybrid contribution -0.353 -0.459 -1.778 1.870 sum 3.298 0.486 14.471 14.850 Atomic orbital electron populations 1.21706 0.95363 1.00623 1.01249 1.21555 0.96224 0.99289 0.94045 0.92127 1.21049 0.96167 0.94132 0.85771 1.44209 1.26282 1.32192 1.27258 1.19497 0.97143 1.21109 0.98945 0.90328 1.25389 1.00780 1.02828 0.95985 1.69867 1.31064 1.47152 1.10056 0.85271 0.81133 0.78081 0.76018 1.20846 1.23333 1.19868 1.20232 0.90721 0.90525 0.92025 1.25401 0.77531 0.83701 0.80830 1.90464 1.69119 1.22020 1.63177 1.84559 1.48521 1.45306 1.56543 1.21078 0.95128 0.99040 0.93869 1.21584 1.00424 0.99135 0.93634 1.21527 0.95752 1.00598 0.97541 1.21523 0.95645 1.00699 0.97486 1.21515 1.00230 0.99215 0.94482 1.21614 0.95279 1.00677 0.97819 0.93330 0.94237 0.92172 0.94598 0.94601 0.94335 0.89627 0.89951 0.74491 0.92222 0.92171 0.91796 0.92311 0.91212 0.91266 0.92023 0.92361 0.91759 0.93262 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 8.37 71.98 0.60 -3.66 16 2 C -0.09 -2.85 2.20 -10.79 -0.02 -2.88 16 3 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 4 C 0.15 6.12 4.85 86.38 0.42 6.54 16 5 N -0.58 -27.64 1.72 -706.33 -1.21 -28.85 16 6 C -0.24 -12.55 7.94 84.03 0.67 -11.88 16 7 H 0.08 4.11 7.92 -2.91 -0.02 4.08 16 8 C -0.06 -3.07 4.91 84.86 0.42 -2.66 16 9 N -0.93 -53.92 8.58 21.65 0.19 -53.74 16 10 Si 0.97 45.01 29.61 68.60 2.03 47.04 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 C 0.19 9.04 5.58 85.63 0.48 9.52 16 15 C 0.48 23.84 6.26 71.24 0.45 24.29 16 16 O -0.56 -31.94 16.55 21.98 0.36 -31.57 16 17 O -0.54 -22.16 13.42 -51.42 -0.69 -22.85 16 18 C -0.07 -1.83 1.78 -10.79 -0.02 -1.85 16 19 C -0.11 -2.33 4.85 30.59 0.15 -2.18 16 20 C -0.12 -2.06 5.92 30.59 0.18 -1.88 16 21 C -0.12 -1.97 5.92 30.60 0.18 -1.79 16 22 C -0.12 -2.31 5.92 30.58 0.18 -2.12 16 23 C -0.12 -2.81 4.85 30.58 0.15 -2.66 16 24 H 0.05 1.87 6.45 -2.39 -0.02 1.85 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.63 6.57 -2.39 -0.02 1.62 16 27 H 0.04 1.42 6.32 -2.39 -0.02 1.41 16 28 H 0.04 1.51 7.99 -2.39 -0.02 1.49 16 29 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 30 H 0.09 4.34 6.55 -2.39 -0.02 4.32 16 31 H 0.08 3.21 8.05 -2.39 -0.02 3.19 16 32 H 0.40 13.12 9.10 -74.06 -0.67 12.45 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.35 6.49 -2.39 -0.02 1.34 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 1.35 6.39 -2.39 -0.02 1.33 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -65.44 330.26 4.81 -60.63 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.31 Total: 22.56 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 3.83 Total: 6.78 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.03 Total: -82.59 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -0.33 Total: -54.42 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.44 4.81 -60.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592592649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.565 kcal (2) G-P(sol) polarization free energy of solvation -65.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds