Wall clock time and date at job start Mon Mar 30 2020 00:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46798 * 2 1 4 4 C 1.52996 * 109.46571 * 120.00194 * 2 1 3 5 5 N 1.46502 * 109.47279 * 293.05073 * 4 2 1 6 6 C 1.36935 * 120.00316 * 275.14185 * 5 4 2 7 7 H 1.08006 * 120.00126 * 324.43847 * 6 5 4 8 8 C 1.38811 * 119.99937 * 144.42957 * 6 5 4 9 9 N 1.31617 * 119.99925 * 170.25578 * 8 6 5 10 10 Si 1.86799 * 120.00027 * 350.25741 * 8 6 5 11 11 H 1.48499 * 109.47283 * 88.77578 * 10 8 6 12 12 H 1.48503 * 109.46766 * 208.77204 * 10 8 6 13 13 H 1.48498 * 109.47044 * 328.76796 * 10 8 6 14 14 C 1.46504 * 119.99751 * 95.14336 * 5 4 2 15 15 C 1.50700 * 109.47126 * 83.90136 * 14 5 4 16 16 O 1.20817 * 119.99988 * 0.02562 * 15 14 5 17 17 O 1.34229 * 119.99813 * 179.97438 * 15 14 5 18 18 C 1.52998 * 109.46812 * 240.00044 * 2 1 3 19 19 C 1.53006 * 109.46791 * 180.02562 * 18 2 1 20 20 C 1.52998 * 109.46791 * 179.97438 * 19 18 2 21 21 C 1.53000 * 109.47654 * 60.00028 * 20 19 18 22 22 C 1.52998 * 109.46598 * 300.00028 * 21 20 19 23 23 C 1.52998 * 109.47395 * 60.00120 * 18 2 1 24 24 H 1.09004 * 109.47235 * 62.64384 * 1 2 3 25 25 H 1.08991 * 109.47473 * 182.64376 * 1 2 3 26 26 H 1.08996 * 109.47229 * 302.64714 * 1 2 3 27 27 H 1.08996 * 109.47829 * 53.05857 * 4 2 1 28 28 H 1.09004 * 109.46887 * 173.05663 * 4 2 1 29 29 H 0.96998 * 120.00250 * 180.02562 * 9 8 6 30 30 H 1.08995 * 109.46699 * 203.90711 * 14 5 4 31 31 H 1.08998 * 109.46688 * 323.90167 * 14 5 4 32 32 H 0.96700 * 117.00058 * 180.02562 * 17 15 14 33 33 H 1.09003 * 109.47191 * 300.00068 * 18 2 1 34 34 H 1.09000 * 109.47201 * 59.99871 * 19 18 2 35 35 H 1.08995 * 109.46911 * 299.99451 * 19 18 2 36 36 H 1.09003 * 109.46729 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47650 * 299.99489 * 20 19 18 38 38 H 1.09003 * 109.47088 * 59.99611 * 21 20 19 39 39 H 1.09000 * 109.47543 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.46966 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.47060 * 299.99600 * 22 21 20 42 42 H 1.09003 * 109.46994 * 59.99827 * 23 18 2 43 43 H 1.09000 * 109.47035 * 299.99668 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6927 0.0590 2.4396 6 6 2.5087 1.0784 2.8520 7 1 3.5796 0.9906 2.7433 8 6 1.9593 2.2247 3.4097 9 7 2.7397 3.1184 3.9795 10 14 0.1125 2.4990 3.3516 11 1 -0.5172 1.8838 4.5475 12 1 -0.1712 3.9566 3.3375 13 1 -0.4422 1.8748 2.1236 14 6 0.4726 -0.2514 3.1887 15 6 0.7480 -1.3754 4.1540 16 8 1.8505 -1.8664 4.2108 17 8 -0.2312 -1.8303 4.9515 18 6 2.0399 -0.7212 -1.2492 19 6 3.5700 -0.7218 -1.2489 20 6 4.0799 -1.4436 -2.4978 21 6 3.5705 -0.7226 -3.7475 22 6 2.0405 -0.7221 -3.7477 23 6 1.5300 0.0000 -2.4985 24 1 -0.3634 0.4722 -0.9128 25 1 -0.3634 -1.0265 0.0474 26 1 -0.3633 0.5544 0.8653 27 1 1.5787 -1.7068 1.3135 28 1 3.1228 -0.8302 1.1893 29 1 2.3559 3.9193 4.3696 30 1 0.1509 0.6314 3.7411 31 1 -0.3128 -0.5523 2.4953 32 1 -0.0066 -2.5523 5.5543 33 1 1.6766 -1.7489 -1.2493 34 1 3.9330 -1.2359 -0.3589 35 1 3.9336 0.3057 -1.2488 36 1 5.1699 -1.4444 -2.4974 37 1 3.7163 -2.4712 -2.4976 38 1 3.9342 0.3050 -3.7477 39 1 3.9341 -1.2366 -4.6372 40 1 1.6775 -0.2088 -4.6382 41 1 1.6768 -1.7496 -3.7474 42 1 1.8933 1.0277 -2.4985 43 1 0.4400 0.0000 -2.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592592650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:10 Heat of formation + Delta-G solvation = -91.184573 kcal Electronic energy + Delta-G solvation = -22149.649225 eV Core-core repulsion = 19001.680007 eV Total energy + Delta-G solvation = -3147.969218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.50103 -38.87284 -36.41448 -35.20142 -33.56553 -31.51920 -30.69731 -28.80127 -28.05672 -25.92389 -23.41550 -22.29751 -21.82091 -20.62680 -19.59925 -19.21121 -17.48611 -17.02257 -16.14008 -15.66455 -15.28154 -14.76253 -14.45637 -14.03831 -13.87768 -13.72389 -13.19686 -13.03581 -12.73842 -12.49082 -12.36141 -12.21028 -12.12251 -11.47632 -11.27966 -11.17828 -10.92940 -10.85920 -10.80610 -10.69189 -10.50314 -10.25075 -10.09458 -9.95293 -9.82037 -9.72835 -9.53473 -9.24670 -8.68728 -7.05457 -6.03464 -3.52853 2.99956 3.17152 3.30343 3.40194 3.74475 4.36661 4.76795 4.87671 4.90422 4.99851 5.25319 5.35510 5.40776 5.60550 5.63964 5.66503 5.70470 5.71470 5.80902 5.82447 5.93462 5.99537 6.01494 6.12034 6.13762 6.19788 6.25239 6.30928 6.35501 6.43272 6.47365 6.48515 6.63083 6.73453 6.75234 6.96233 7.10247 7.16320 7.91271 8.30197 8.63283 8.85810 9.57681 9.92162 11.11516 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.006152 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.017954 B = 4549.912614 C = 5004.133648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 H 0.080 0.920 4 C 0.160 3.840 5 N -0.573 5.573 6 C -0.261 4.261 7 H 0.087 0.913 8 C 0.029 3.971 9 N -0.904 5.904 10 Si 0.880 3.120 11 H -0.283 1.283 12 H -0.300 1.300 13 H -0.255 1.255 14 C 0.132 3.868 15 C 0.439 3.561 16 O -0.505 6.505 17 O -0.536 6.536 18 C -0.077 4.077 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.115 4.115 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.265 0.735 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.389 0.611 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 -8.267 -11.403 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 H 0.098 0.902 4 C 0.035 3.965 5 N -0.293 5.293 6 C -0.390 4.390 7 H 0.104 0.896 8 C -0.171 4.171 9 N -0.545 5.545 10 Si 0.713 3.287 11 H -0.212 1.212 12 H -0.228 1.228 13 H -0.180 1.180 14 C 0.002 3.998 15 C 0.278 3.722 16 O -0.391 6.391 17 O -0.347 6.347 18 C -0.096 4.096 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.153 4.153 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.246 0.754 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.419 -7.896 -11.601 14.712 hybrid contribution -0.804 -0.251 0.708 1.100 sum -5.223 -8.147 -10.892 14.570 Atomic orbital electron populations 1.22033 0.96494 1.00594 1.01694 1.21732 0.95179 1.01463 0.94401 0.90191 1.21017 0.99056 0.92102 0.84351 1.43940 1.25047 1.36223 1.24099 1.18890 0.90617 0.91562 1.37881 0.89555 1.25446 0.97594 0.95529 0.98555 1.69736 1.34840 1.11258 1.38700 0.87019 0.86928 0.76200 0.78553 1.21196 1.22812 1.18021 1.21492 0.92659 0.93184 0.92421 1.26428 0.82309 0.83802 0.79705 1.90606 1.24565 1.57079 1.66880 1.84706 1.45469 1.53213 1.51315 1.21121 0.95040 0.99093 0.94313 1.21656 0.95501 1.01075 0.97264 1.21540 0.99820 0.99214 0.95031 1.21528 0.95830 1.00695 0.97562 1.21539 0.95652 1.00465 0.97882 1.21653 1.00202 0.99470 0.93950 0.93467 0.93922 0.91673 0.94277 0.92347 0.92471 0.89195 0.89650 0.75401 0.91998 0.91373 0.91764 0.92477 0.92452 0.92132 0.92789 0.92691 0.92429 0.92056 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.02 37.16 0.30 -2.11 16 2 C -0.11 -1.81 2.14 -90.62 -0.19 -2.01 16 3 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 4 C 0.16 3.11 4.89 -4.04 -0.02 3.09 16 5 N -0.57 -13.24 1.50 -174.61 -0.26 -13.50 16 6 C -0.26 -7.14 10.06 -15.06 -0.15 -7.29 16 7 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 8 C 0.03 0.81 5.46 -17.43 -0.10 0.71 16 9 N -0.90 -27.25 13.97 55.49 0.78 -26.47 16 10 Si 0.88 21.04 24.53 -169.99 -4.17 16.87 16 11 H -0.28 -6.64 6.65 56.52 0.38 -6.26 16 12 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.25 -5.55 4.73 56.52 0.27 -5.28 16 14 C 0.13 2.83 3.98 -5.19 -0.02 2.81 16 15 C 0.44 9.26 8.39 36.01 0.30 9.57 16 16 O -0.51 -12.11 17.14 -18.74 -0.32 -12.43 16 17 O -0.54 -9.15 13.42 -39.26 -0.53 -9.67 16 18 C -0.08 -1.06 1.77 -90.62 -0.16 -1.22 16 19 C -0.12 -1.62 4.86 -26.73 -0.13 -1.75 16 20 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.42 16 22 C -0.12 -1.26 5.92 -26.71 -0.16 -1.42 16 23 C -0.12 -1.43 4.86 -26.71 -0.13 -1.56 16 24 H 0.05 0.67 6.29 -51.93 -0.33 0.34 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.18 4.26 -51.93 -0.22 0.96 16 27 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 28 H 0.06 1.18 6.02 -51.93 -0.31 0.86 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 30 H 0.09 2.08 2.18 -51.93 -0.11 1.97 16 31 H 0.09 1.58 6.35 -51.93 -0.33 1.25 16 32 H 0.39 4.78 9.10 45.56 0.41 5.19 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.00 6.28 -51.93 -0.33 0.68 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.75 6.37 -51.93 -0.33 0.42 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -31.12 322.07 -6.76 -37.88 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.33 Total: 6.59 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.78 Total: -4.12 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.51 Total: -39.97 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.85 Total: -22.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.17 Total: 16.87 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.12 -6.76 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592592650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.302 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds