Wall clock time and date at job start Mon Mar 30 2020 01:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47082 * 2 1 4 4 C 1.46492 * 120.00082 * 270.00000 * 3 2 1 5 5 C 1.50706 * 109.47114 * 269.99897 * 4 3 2 6 6 H 1.07992 * 119.99793 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99725 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00352 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99749 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47035 * 60.00292 * 9 7 5 11 11 H 1.48496 * 109.46934 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47260 * 300.00286 * 9 7 5 13 13 C 1.34772 * 119.99811 * 89.99699 * 3 2 1 14 14 O 1.21277 * 120.00337 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00153 * 0.02562 * 13 3 2 16 16 C 1.52997 * 109.47337 * 179.97438 * 15 13 3 17 17 H 1.09001 * 109.47289 * 55.00130 * 16 15 13 18 18 C 1.53006 * 109.47269 * 294.99636 * 16 15 13 19 19 C 1.53002 * 109.47212 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.46806 * 60.00282 * 19 18 16 21 21 C 1.52996 * 109.47518 * 299.99991 * 20 19 18 22 22 C 1.52997 * 109.47131 * 59.99828 * 21 20 19 23 23 H 1.09001 * 109.47289 * 60.00050 * 22 21 20 24 24 O 1.42905 * 109.47264 * 180.02562 * 22 21 20 25 25 H 1.09001 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47600 * 299.99806 * 1 2 3 27 27 H 1.09003 * 109.46930 * 60.00421 * 1 2 3 28 28 H 1.09005 * 109.47446 * 240.00416 * 2 1 3 29 29 H 1.09001 * 109.47069 * 120.00350 * 2 1 3 30 30 H 1.09003 * 109.47561 * 29.99652 * 4 3 2 31 31 H 1.09000 * 109.47449 * 149.99777 * 4 3 2 32 32 H 0.97002 * 120.00396 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47562 * 59.99860 * 15 13 3 34 34 H 1.09004 * 109.47407 * 299.99811 * 15 13 3 35 35 H 1.08988 * 109.47058 * 300.00448 * 18 16 15 36 36 H 1.09001 * 109.46289 * 59.99955 * 18 16 15 37 37 H 1.09002 * 109.47097 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.47142 * 300.00375 * 19 18 16 39 39 H 1.09001 * 109.47194 * 60.00125 * 20 19 18 40 40 H 1.09004 * 109.46724 * 179.97438 * 20 19 18 41 41 H 1.09001 * 109.46997 * 300.00254 * 21 20 19 42 42 H 1.08992 * 109.47534 * 180.02562 * 21 20 19 43 43 H 0.96702 * 113.99404 * 300.00214 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1258 -3.6180 9 14 5.9136 2.0968 -3.4168 10 1 6.1418 0.6401 -3.5936 11 1 6.1610 2.7968 -4.7028 12 1 6.8407 2.6211 -2.3820 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1673 15 6 1.9922 1.3060 2.4723 16 6 2.3240 2.2432 3.6352 17 1 1.7583 3.1688 3.5287 18 6 3.8216 2.5567 3.6263 19 6 4.1533 3.4944 4.7889 20 6 3.7814 2.8192 6.1106 21 6 2.2840 2.5057 6.1196 22 6 1.9523 1.5681 4.9570 23 1 2.5179 0.6425 5.0639 24 8 0.5535 1.2756 4.9650 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1384 32 1 3.6749 3.5157 -4.4443 33 1 2.6227 0.4187 2.5299 34 1 0.9443 1.0114 2.5302 35 1 4.3871 1.6311 3.7328 36 1 4.0863 3.0380 2.6848 37 1 5.2201 3.7181 4.7823 38 1 3.5876 4.4200 4.6819 39 1 4.3471 1.8937 6.2176 40 1 4.0182 3.4871 6.9389 41 1 1.7183 3.4312 6.0126 42 1 2.0190 2.0251 7.0613 43 1 0.2463 0.8457 5.7750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597130343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:13 Heat of formation + Delta-G solvation = -116.855469 kcal Electronic energy + Delta-G solvation = -21797.089280 eV Core-core repulsion = 18648.006889 eV Total energy + Delta-G solvation = -3149.082392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74304 -38.32929 -35.61034 -35.10750 -32.90937 -32.24054 -29.98656 -29.63171 -27.81947 -26.00662 -23.04286 -22.76913 -22.42434 -21.09632 -19.77845 -18.08027 -17.25522 -16.48238 -16.21332 -15.56482 -15.00091 -14.76151 -14.40037 -14.31516 -13.84332 -13.66149 -13.24643 -12.94527 -12.81925 -12.64700 -12.19321 -12.11186 -11.79752 -11.66057 -11.36199 -11.25885 -11.12419 -10.92422 -10.85262 -10.64125 -10.59686 -10.43224 -10.24588 -10.11482 -10.01261 -9.77172 -9.58707 -8.65606 -8.38947 -7.55473 -5.99648 -4.04219 3.33971 3.38355 3.40811 3.57746 4.02634 4.17466 4.47988 4.66893 4.72041 4.95606 5.16241 5.18370 5.30763 5.35086 5.38053 5.40852 5.46286 5.53852 5.62873 5.72716 5.75228 5.82008 5.88245 5.98933 6.01168 6.08139 6.14867 6.25337 6.29630 6.31769 6.36199 6.58991 6.64070 6.73639 7.16237 7.52178 7.60495 7.65253 7.97476 8.29754 8.54878 8.96152 9.22468 9.60832 11.08299 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.005224 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.826445 B = 5358.233779 C = 6305.282491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.599 5.599 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.506 3.494 14 O -0.542 6.542 15 C -0.134 4.134 16 C -0.059 4.059 17 H 0.082 0.918 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.149 4.149 22 C 0.109 3.891 23 H 0.053 0.947 24 O -0.565 6.565 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 -6.424 18.000 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.420 6.420 15 C -0.174 4.174 16 C -0.078 4.078 17 H 0.101 0.899 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.187 4.187 22 C 0.050 3.950 23 H 0.071 0.929 24 O -0.370 6.370 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.358 -5.430 17.193 18.340 hybrid contribution 0.921 -0.540 0.163 1.081 sum -2.437 -5.970 17.356 18.515 Atomic orbital electron populations 1.22216 0.96889 1.01288 1.02347 1.21383 0.93478 0.84348 1.02443 1.48261 1.63812 1.13190 1.07843 1.19230 0.96082 0.93643 0.78368 1.21407 0.96981 1.31741 1.06157 0.92612 1.24930 0.97742 0.94996 0.96429 1.69926 1.35688 1.33523 1.14338 0.86581 0.84956 0.78195 0.77799 1.20305 1.21210 1.20233 1.20373 0.78167 0.86968 0.85212 1.90611 1.45976 1.18222 1.87221 1.21719 1.03469 0.99175 0.93014 1.20840 0.97177 0.98800 0.90964 0.89925 1.21734 0.94112 0.99438 1.00513 1.21548 1.01043 0.99077 0.94056 1.21502 0.95224 1.00637 0.98068 1.22240 0.97405 1.00965 0.98091 1.21904 0.81435 0.96374 0.95292 0.92948 1.86567 1.24318 1.82653 1.43437 0.92328 0.92869 0.92198 0.90216 0.91785 0.95233 0.93972 0.92735 0.90100 0.88863 0.92730 0.88489 0.91989 0.91796 0.92106 0.92107 0.91131 0.92170 0.78199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.11 1.81 5.93 -4.04 -0.02 1.79 16 3 N -0.60 -13.03 2.46 -175.06 -0.43 -13.46 16 4 C 0.25 6.58 5.16 -5.20 -0.03 6.55 16 5 C -0.52 -15.06 9.39 -34.44 -0.32 -15.39 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.90 22.10 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.51 10.74 7.39 -10.99 -0.08 10.65 16 14 O -0.54 -13.58 13.55 5.56 0.08 -13.51 16 15 C -0.13 -2.13 3.65 -27.89 -0.10 -2.23 16 16 C -0.06 -0.87 1.58 -90.62 -0.14 -1.01 16 17 H 0.08 1.41 7.95 -51.93 -0.41 1.00 16 18 C -0.12 -1.80 4.95 -26.73 -0.13 -1.93 16 19 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 20 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 21 C -0.15 -1.47 5.54 -26.73 -0.15 -1.62 16 22 C 0.11 1.24 2.90 -26.73 -0.08 1.16 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 O -0.56 -6.33 12.56 -35.23 -0.44 -6.78 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.75 7.22 -51.93 -0.38 0.38 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 29 H 0.06 0.91 6.44 -51.93 -0.33 0.58 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.08 1.16 7.40 -51.93 -0.38 0.77 16 34 H 0.09 1.41 6.58 -51.93 -0.34 1.07 16 35 H 0.05 0.75 8.14 -51.94 -0.42 0.33 16 36 H 0.10 1.83 5.95 -51.93 -0.31 1.52 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.37 2.44 9.08 45.56 0.41 2.86 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -33.24 338.48 -7.81 -41.06 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.74 Total: 2.15 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.09 Total: -5.38 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.31 Total: -39.72 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.37 Total: -20.28 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.24 -7.81 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597130343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.798 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds