Wall clock time and date at job start Mon Mar 30 2020 01:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47082 * 2 1 4 4 C 1.46492 * 120.00082 * 270.00000 * 3 2 1 5 5 C 1.50706 * 109.47114 * 269.99897 * 4 3 2 6 6 H 1.07992 * 119.99793 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99725 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00352 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99749 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47035 * 60.00292 * 9 7 5 11 11 H 1.48496 * 109.46934 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47260 * 300.00286 * 9 7 5 13 13 C 1.34772 * 119.99811 * 89.99699 * 3 2 1 14 14 O 1.21277 * 120.00337 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00153 * 0.02562 * 13 3 2 16 16 C 1.52997 * 109.47337 * 179.97438 * 15 13 3 17 17 H 1.09001 * 109.47289 * 55.00130 * 16 15 13 18 18 C 1.53006 * 109.47269 * 294.99636 * 16 15 13 19 19 C 1.53002 * 109.47212 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.46806 * 60.00282 * 19 18 16 21 21 C 1.52996 * 109.47518 * 299.99991 * 20 19 18 22 22 C 1.52997 * 109.47131 * 59.99828 * 21 20 19 23 23 H 1.09001 * 109.47289 * 60.00050 * 22 21 20 24 24 O 1.42905 * 109.47264 * 180.02562 * 22 21 20 25 25 H 1.09001 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47600 * 299.99806 * 1 2 3 27 27 H 1.09003 * 109.46930 * 60.00421 * 1 2 3 28 28 H 1.09005 * 109.47446 * 240.00416 * 2 1 3 29 29 H 1.09001 * 109.47069 * 120.00350 * 2 1 3 30 30 H 1.09003 * 109.47561 * 29.99652 * 4 3 2 31 31 H 1.09000 * 109.47449 * 149.99777 * 4 3 2 32 32 H 0.97002 * 120.00396 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47562 * 59.99860 * 15 13 3 34 34 H 1.09004 * 109.47407 * 299.99811 * 15 13 3 35 35 H 1.08988 * 109.47058 * 300.00448 * 18 16 15 36 36 H 1.09001 * 109.46289 * 59.99955 * 18 16 15 37 37 H 1.09002 * 109.47097 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.47142 * 300.00375 * 19 18 16 39 39 H 1.09001 * 109.47194 * 60.00125 * 20 19 18 40 40 H 1.09004 * 109.46724 * 179.97438 * 20 19 18 41 41 H 1.09001 * 109.46997 * 300.00254 * 21 20 19 42 42 H 1.08992 * 109.47534 * 180.02562 * 21 20 19 43 43 H 0.96702 * 113.99404 * 300.00214 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1258 -3.6180 9 14 5.9136 2.0968 -3.4168 10 1 6.1418 0.6401 -3.5936 11 1 6.1610 2.7968 -4.7028 12 1 6.8407 2.6211 -2.3820 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1673 15 6 1.9922 1.3060 2.4723 16 6 2.3240 2.2432 3.6352 17 1 1.7583 3.1688 3.5287 18 6 3.8216 2.5567 3.6263 19 6 4.1533 3.4944 4.7889 20 6 3.7814 2.8192 6.1106 21 6 2.2840 2.5057 6.1196 22 6 1.9523 1.5681 4.9570 23 1 2.5179 0.6425 5.0639 24 8 0.5535 1.2756 4.9650 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1384 32 1 3.6749 3.5157 -4.4443 33 1 2.6227 0.4187 2.5299 34 1 0.9443 1.0114 2.5302 35 1 4.3871 1.6311 3.7328 36 1 4.0863 3.0380 2.6848 37 1 5.2201 3.7181 4.7823 38 1 3.5876 4.4200 4.6819 39 1 4.3471 1.8937 6.2176 40 1 4.0182 3.4871 6.9389 41 1 1.7183 3.4312 6.0126 42 1 2.0190 2.0251 7.0613 43 1 0.2463 0.8457 5.7750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597130343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:13 Heat of formation + Delta-G solvation = -139.808050 kcal Electronic energy + Delta-G solvation = -21798.084579 eV Core-core repulsion = 18648.006889 eV Total energy + Delta-G solvation = -3150.077690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12638 -39.60446 -36.98763 -36.33617 -34.95171 -33.54811 -31.57041 -30.59186 -29.49631 -27.58150 -24.90265 -24.11078 -23.50018 -22.25769 -20.78790 -19.71617 -18.61156 -18.11584 -17.83130 -17.21295 -16.45490 -16.05979 -16.02149 -15.44065 -15.04521 -14.78731 -14.62450 -14.36872 -14.09123 -13.91958 -13.71126 -13.51274 -13.23448 -13.17389 -12.91449 -12.66631 -12.57119 -12.45283 -12.26319 -12.11738 -11.98291 -11.77885 -11.72191 -11.57923 -11.30945 -11.11744 -10.66425 -10.63976 -10.32209 -9.39447 -8.21963 -6.37367 1.35300 1.40053 1.47391 1.90648 2.32190 2.48187 3.06929 3.33552 3.67948 3.68585 3.95686 4.07815 4.13447 4.20733 4.31204 4.40922 4.43506 4.47799 4.49335 4.57403 4.65592 4.70213 4.83641 4.94659 4.98921 5.01510 5.05298 5.09786 5.20877 5.21279 5.27675 5.28518 5.32666 5.39483 5.50441 5.56974 5.59472 5.89221 6.07430 6.70456 6.85207 7.03368 7.29033 7.55409 8.84919 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.005224 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.826445 B = 5358.233779 C = 6305.282491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.607 5.607 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.494 3.506 14 O -0.592 6.592 15 C -0.117 4.117 16 C -0.060 4.060 17 H 0.047 0.953 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.146 4.146 22 C 0.118 3.882 23 H 0.075 0.925 24 O -0.582 6.582 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.018 0.982 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 -9.174 20.388 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.021 4.021 3 N -0.338 5.338 4 C 0.141 3.859 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.283 3.717 14 O -0.474 6.474 15 C -0.157 4.157 16 C -0.079 4.079 17 H 0.066 0.934 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.184 4.184 22 C 0.059 3.941 23 H 0.093 0.907 24 O -0.390 6.390 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.036 0.964 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.825 -8.233 19.612 21.457 hybrid contribution 0.683 0.351 -0.595 0.971 sum -2.142 -7.882 19.018 20.698 Atomic orbital electron populations 1.22143 0.94839 1.03446 1.01413 1.21714 0.95149 0.81503 1.03768 1.48324 1.64050 1.15082 1.06336 1.18663 0.95303 0.91349 0.80614 1.21671 0.97786 1.31990 1.06518 0.92844 1.25889 1.02505 0.94441 0.96395 1.70057 1.37906 1.34255 1.14784 0.85455 0.78864 0.79075 0.77334 1.18330 1.20320 1.20315 1.21441 0.76863 0.86659 0.86701 1.90592 1.48009 1.20705 1.88064 1.21697 1.04817 0.99463 0.89714 1.20819 0.96535 0.97582 0.92969 0.93414 1.21629 0.94652 1.00201 0.99144 1.21537 1.01086 0.98144 0.94942 1.21476 0.95514 1.01359 0.96452 1.22225 0.97018 1.00235 0.98881 1.21734 0.82043 0.97121 0.93170 0.90723 1.86507 1.24018 1.83143 1.45339 0.88520 0.92477 0.94477 0.91054 0.88216 0.96399 0.98913 0.92438 0.87420 0.87339 0.91097 0.93491 0.91573 0.93541 0.90506 0.90512 0.92732 0.88971 0.75561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 10.24 71.98 0.74 -3.62 16 2 C 0.10 3.28 5.93 86.38 0.51 3.79 16 3 N -0.61 -27.14 2.46 -826.16 -2.03 -29.17 16 4 C 0.26 14.84 5.16 85.64 0.44 15.28 16 5 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 9 Si 0.97 45.82 29.54 68.60 2.03 47.84 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 C 0.49 21.66 7.39 87.66 0.65 22.31 16 14 O -0.59 -31.84 13.55 -3.02 -0.04 -31.88 16 15 C -0.12 -3.59 3.65 29.85 0.11 -3.48 16 16 C -0.06 -1.75 1.58 -10.79 -0.02 -1.76 16 17 H 0.05 1.71 7.95 -2.39 -0.02 1.69 16 18 C -0.12 -3.57 4.95 30.60 0.15 -3.42 16 19 C -0.12 -2.92 5.92 30.60 0.18 -2.74 16 20 C -0.11 -1.88 5.92 30.59 0.18 -1.69 16 21 C -0.15 -2.43 5.54 30.59 0.17 -2.26 16 22 C 0.12 2.32 2.90 30.60 0.09 2.41 16 23 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 24 O -0.58 -11.11 12.56 -148.98 -1.87 -12.98 16 25 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.51 7.22 -2.39 -0.02 1.49 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 2.43 8.07 -2.38 -0.02 2.41 16 29 H 0.10 2.53 6.44 -2.39 -0.02 2.51 16 30 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 31 H -0.01 -0.48 7.42 -2.39 -0.02 -0.49 16 32 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.11 2.74 7.40 -2.39 -0.02 2.72 16 34 H 0.11 3.02 6.58 -2.38 -0.02 3.01 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.89 5.95 -2.39 -0.01 1.87 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.39 3.54 9.08 -74.06 -0.67 2.86 16 Total: -1.00 -77.73 338.48 2.58 -75.15 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.31 Total: 14.90 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 3.91 Total: -6.27 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.74 Total: -86.76 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.91 Total: -44.86 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.73 2.58 -75.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597130343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.659 kcal (2) G-P(sol) polarization free energy of solvation -77.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds