Wall clock time and date at job start Mon Mar 30 2020 01:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99842 * 2 1 4 4 C 1.50701 * 109.47195 * 66.04822 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27796 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.46899 * 111.00141 * 236.04457 * 2 1 3 13 13 C 1.53000 * 109.46953 * 293.95589 * 12 2 1 14 14 H 1.08994 * 109.49148 * 59.95378 * 13 12 2 15 15 C 1.53093 * 109.48823 * 180.02562 * 13 12 2 16 16 C 1.53191 * 109.26364 * 178.22652 * 15 13 12 17 17 C 1.53307 * 108.93353 * 302.34836 * 16 15 13 18 18 C 1.52283 * 109.27003 * 55.69334 * 17 16 15 19 19 C 1.54622 * 110.16514 * 67.40807 * 18 17 16 20 20 C 1.55066 * 100.88351 * 151.53117 * 19 18 17 21 21 O 1.43718 * 105.19971 * 324.19150 * 20 19 18 22 22 C 1.43411 * 109.93061 * 24.31361 * 21 20 19 23 23 O 1.41965 * 111.43240 * 304.54367 * 18 17 16 24 24 H 1.09006 * 109.46886 * 60.00102 * 1 2 3 25 25 H 1.09003 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47165 * 299.99892 * 1 2 3 27 27 H 1.09000 * 109.47038 * 306.03965 * 3 2 1 28 28 H 1.09007 * 109.46566 * 186.04497 * 3 2 1 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47253 * 53.95521 * 12 2 1 31 31 H 1.08996 * 109.47059 * 173.95504 * 12 2 1 32 32 H 1.08999 * 109.50275 * 298.16025 * 15 13 12 33 33 H 1.09000 * 109.50847 * 58.28922 * 15 13 12 34 34 H 1.09004 * 109.55757 * 62.18669 * 16 15 13 35 35 H 1.08997 * 109.55984 * 182.40385 * 16 15 13 36 36 H 1.08996 * 109.50578 * 175.62912 * 17 16 15 37 37 H 1.08997 * 109.50869 * 295.71580 * 17 16 15 38 38 H 1.09005 * 111.14047 * 269.43250 * 19 18 17 39 39 H 1.08997 * 111.14364 * 33.62446 * 19 18 17 40 40 H 1.08999 * 110.30106 * 205.26253 * 20 19 18 41 41 H 1.09003 * 110.30048 * 83.11944 * 20 19 18 42 42 H 1.09003 * 109.85316 * 238.36764 * 22 21 20 43 43 H 1.08995 * 109.96178 * 117.36147 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0223 3.3512 1.5263 7 7 2.7075 4.0036 0.6128 8 14 1.5712 4.1913 3.1326 9 1 0.8041 3.2486 3.9858 10 1 2.8098 4.6043 3.8401 11 1 0.7406 5.3891 2.8486 12 6 1.9955 -0.7660 -1.1375 13 6 1.6314 -2.2426 -0.9703 14 1 0.5473 -2.3477 -0.9314 15 6 2.1805 -3.0414 -2.1552 16 6 1.8516 -4.5249 -1.9605 17 6 2.4507 -4.9968 -0.6306 18 6 1.9341 -4.1115 0.4956 19 6 0.4171 -4.3344 0.6958 20 6 0.2691 -4.0037 2.2035 21 8 1.4747 -4.4901 2.8161 22 6 2.5280 -4.5474 1.8446 23 8 2.2031 -2.7406 0.2428 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9273 -0.8310 28 1 3.0798 1.3444 -0.1082 29 1 2.9783 4.9211 0.7730 30 1 1.5612 -0.3873 -2.0628 31 1 3.0797 -0.6611 -1.1755 32 1 1.7223 -2.6851 -3.0778 33 1 3.2614 -2.9126 -2.2116 34 1 0.7701 -4.6595 -1.9419 35 1 2.2774 -5.1037 -2.7802 36 1 2.1568 -6.0299 -0.4453 37 1 3.5376 -4.9304 -0.6770 38 1 -0.1656 -3.6462 0.0834 39 1 0.1415 -5.3690 0.4914 40 1 -0.5991 -4.5150 2.6193 41 1 0.1796 -2.9270 2.3475 42 1 2.9079 -5.5664 1.7700 43 1 3.3345 -3.8718 2.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615773546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:54 Heat of formation + Delta-G solvation = -90.363006 kcal Electronic energy + Delta-G solvation = -22199.662011 eV Core-core repulsion = 19051.728419 eV Total energy + Delta-G solvation = -3147.933592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64065 -37.92578 -36.20456 -33.66735 -32.83781 -31.97200 -30.10979 -28.29359 -27.01902 -26.08607 -24.39407 -22.75943 -22.31945 -21.42012 -20.04895 -19.25275 -17.07144 -16.35553 -16.14991 -15.85693 -15.02598 -14.93028 -14.66552 -14.51390 -13.95775 -13.87177 -13.67329 -13.20658 -12.92595 -12.66597 -12.41237 -11.99496 -11.86056 -11.75202 -11.62693 -11.42236 -11.14939 -11.00288 -10.91402 -10.84596 -10.68231 -10.54435 -10.37529 -10.08545 -9.66847 -9.45185 -9.18675 -9.09180 -8.39092 -7.14293 -5.98044 -3.98499 3.34691 3.41967 3.47763 3.68367 3.93314 4.35786 4.45661 4.64288 4.64890 4.78780 4.90734 5.05561 5.10757 5.20542 5.27242 5.34991 5.38944 5.44810 5.49955 5.64527 5.71365 5.75928 5.79539 5.83007 5.89721 5.91862 5.95692 6.02649 6.12348 6.14078 6.21738 6.34205 6.44469 6.75700 7.00391 7.32437 7.37003 7.57053 7.86296 8.14709 8.25553 8.60921 9.09604 9.65514 11.13083 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022325 B = 0.005164 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.914107 B = 5421.354379 C = 6161.011027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.062 3.938 13 C 0.096 3.904 14 H 0.057 0.943 15 C -0.153 4.153 16 C -0.118 4.118 17 C -0.137 4.137 18 C 0.084 3.916 19 C -0.182 4.182 20 C 0.057 3.943 21 O -0.383 6.383 22 C 0.068 3.932 23 O -0.331 6.331 24 H 0.009 0.991 25 H 0.041 0.959 26 H 0.073 0.927 27 H -0.011 1.011 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 -19.040 -5.013 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.067 4.067 13 C 0.038 3.962 14 H 0.075 0.925 15 C -0.191 4.191 16 C -0.156 4.156 17 C -0.175 4.175 18 C 0.044 3.956 19 C -0.220 4.220 20 C -0.020 4.020 21 O -0.303 6.303 22 C -0.009 4.009 23 O -0.250 6.250 24 H 0.027 0.973 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.007 0.993 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.968 -19.018 -4.266 19.715 hybrid contribution -0.631 0.919 -0.475 1.212 sum -3.599 -18.099 -4.742 19.053 Atomic orbital electron populations 1.22235 0.89356 0.98730 1.00727 1.62051 1.06409 1.17534 1.39306 1.19748 0.95411 0.81499 0.96573 1.21202 1.34505 0.96654 1.01681 0.91802 1.24985 0.95394 0.97386 0.96948 1.69969 1.38756 1.11277 1.34091 0.86453 0.78171 0.79257 0.83627 1.19635 1.21014 1.21205 1.22057 1.01062 0.90541 0.92996 1.22269 0.96578 0.93866 0.83489 0.92496 1.22228 1.02572 0.95218 0.99111 1.21588 1.00818 0.96187 0.97007 1.21968 1.01628 0.99008 0.94861 1.22304 0.93520 0.84733 0.95069 1.23782 0.97531 1.02566 0.98085 1.23358 0.87453 1.00068 0.91091 1.88411 1.19989 1.87066 1.34815 1.22998 0.91312 1.00700 0.85844 1.88057 1.74804 1.21479 1.40625 0.97276 0.94049 0.90837 0.99325 0.95232 0.93066 0.94626 0.90656 0.90997 0.90828 0.91903 0.91526 0.90928 0.90772 0.89461 0.90140 0.90185 0.91006 0.90402 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.16 60.06 0.55 1.31 16 2 N -0.53 -11.73 4.62 -244.36 -1.13 -12.86 16 3 C 0.19 5.15 4.72 -4.97 -0.02 5.12 16 4 C -0.50 -14.45 8.52 -34.44 -0.29 -14.75 16 5 H 0.06 1.84 7.10 -52.49 -0.37 1.47 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 C 0.06 1.13 4.65 -3.82 -0.02 1.12 16 13 C 0.10 1.42 2.30 -26.68 -0.06 1.36 16 14 H 0.06 0.82 4.60 -51.93 -0.24 0.58 16 15 C -0.15 -1.77 5.40 -26.58 -0.14 -1.92 16 16 C -0.12 -1.13 5.84 -26.47 -0.15 -1.29 16 17 C -0.14 -1.37 4.72 -26.94 -0.13 -1.50 16 18 C 0.08 1.08 0.83 -89.77 -0.07 1.00 16 19 C -0.18 -2.10 5.33 -24.79 -0.13 -2.23 16 20 C 0.06 0.75 7.78 38.25 0.30 1.04 16 21 O -0.38 -5.79 11.37 -35.23 -0.40 -6.19 16 22 C 0.07 0.90 7.18 37.52 0.27 1.17 16 23 O -0.33 -5.43 9.74 -35.23 -0.34 -5.78 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.04 0.69 6.30 -51.93 -0.33 0.37 16 26 H 0.07 1.56 6.86 -51.93 -0.36 1.21 16 27 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 28 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 31 H 0.07 1.42 7.93 -51.93 -0.41 1.01 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.57 7.61 -51.93 -0.40 0.18 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.02 6.11 -51.93 -0.32 0.70 16 39 H 0.08 0.77 7.93 -51.93 -0.41 0.35 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 0.82 7.78 -51.93 -0.40 0.41 16 43 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 LS Contribution 329.57 15.07 4.97 4.97 Total: -1.00 -31.75 329.57 -8.62 -40.37 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -7.42 Total: -3.01 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.01 Total: -8.11 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.39 Total: -39.36 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.74 Total: -11.97 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.75 -8.62 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615773546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.997 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds