Wall clock time and date at job start Mon Mar 30 2020 01:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99842 * 2 1 4 4 C 1.50701 * 109.47195 * 66.04822 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27796 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.46899 * 111.00141 * 236.04457 * 2 1 3 13 13 C 1.53000 * 109.46953 * 293.95589 * 12 2 1 14 14 H 1.08994 * 109.49148 * 59.95378 * 13 12 2 15 15 C 1.53093 * 109.48823 * 180.02562 * 13 12 2 16 16 C 1.53191 * 109.26364 * 178.22652 * 15 13 12 17 17 C 1.53307 * 108.93353 * 302.34836 * 16 15 13 18 18 C 1.52283 * 109.27003 * 55.69334 * 17 16 15 19 19 C 1.54622 * 110.16514 * 67.40807 * 18 17 16 20 20 C 1.55066 * 100.88351 * 151.53117 * 19 18 17 21 21 O 1.43718 * 105.19971 * 324.19150 * 20 19 18 22 22 C 1.43411 * 109.93061 * 24.31361 * 21 20 19 23 23 O 1.41965 * 111.43240 * 304.54367 * 18 17 16 24 24 H 1.09006 * 109.46886 * 60.00102 * 1 2 3 25 25 H 1.09003 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47165 * 299.99892 * 1 2 3 27 27 H 1.09000 * 109.47038 * 306.03965 * 3 2 1 28 28 H 1.09007 * 109.46566 * 186.04497 * 3 2 1 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47253 * 53.95521 * 12 2 1 31 31 H 1.08996 * 109.47059 * 173.95504 * 12 2 1 32 32 H 1.08999 * 109.50275 * 298.16025 * 15 13 12 33 33 H 1.09000 * 109.50847 * 58.28922 * 15 13 12 34 34 H 1.09004 * 109.55757 * 62.18669 * 16 15 13 35 35 H 1.08997 * 109.55984 * 182.40385 * 16 15 13 36 36 H 1.08996 * 109.50578 * 175.62912 * 17 16 15 37 37 H 1.08997 * 109.50869 * 295.71580 * 17 16 15 38 38 H 1.09005 * 111.14047 * 269.43250 * 19 18 17 39 39 H 1.08997 * 111.14364 * 33.62446 * 19 18 17 40 40 H 1.08999 * 110.30106 * 205.26253 * 20 19 18 41 41 H 1.09003 * 110.30048 * 83.11944 * 20 19 18 42 42 H 1.09003 * 109.85316 * 238.36764 * 22 21 20 43 43 H 1.08995 * 109.96178 * 117.36147 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0223 3.3512 1.5263 7 7 2.7075 4.0036 0.6128 8 14 1.5712 4.1913 3.1326 9 1 0.8041 3.2486 3.9858 10 1 2.8098 4.6043 3.8401 11 1 0.7406 5.3891 2.8486 12 6 1.9955 -0.7660 -1.1375 13 6 1.6314 -2.2426 -0.9703 14 1 0.5473 -2.3477 -0.9314 15 6 2.1805 -3.0414 -2.1552 16 6 1.8516 -4.5249 -1.9605 17 6 2.4507 -4.9968 -0.6306 18 6 1.9341 -4.1115 0.4956 19 6 0.4171 -4.3344 0.6958 20 6 0.2691 -4.0037 2.2035 21 8 1.4747 -4.4901 2.8161 22 6 2.5280 -4.5474 1.8446 23 8 2.2031 -2.7406 0.2428 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9273 -0.8310 28 1 3.0798 1.3444 -0.1082 29 1 2.9783 4.9211 0.7730 30 1 1.5612 -0.3873 -2.0628 31 1 3.0797 -0.6611 -1.1755 32 1 1.7223 -2.6851 -3.0778 33 1 3.2614 -2.9126 -2.2116 34 1 0.7701 -4.6595 -1.9419 35 1 2.2774 -5.1037 -2.7802 36 1 2.1568 -6.0299 -0.4453 37 1 3.5376 -4.9304 -0.6770 38 1 -0.1656 -3.6462 0.0834 39 1 0.1415 -5.3690 0.4914 40 1 -0.5991 -4.5150 2.6193 41 1 0.1796 -2.9270 2.3475 42 1 2.9079 -5.5664 1.7700 43 1 3.3345 -3.8718 2.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615773546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:54 Heat of formation + Delta-G solvation = -112.703145 kcal Electronic energy + Delta-G solvation = -22200.630752 eV Core-core repulsion = 19051.728419 eV Total energy + Delta-G solvation = -3148.902333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.66004 -39.15077 -37.78822 -34.81848 -34.60068 -33.33036 -31.14180 -29.77323 -28.79057 -27.38279 -25.94347 -23.90098 -23.52552 -22.62672 -21.69931 -20.24196 -18.54733 -18.09098 -17.18767 -17.02234 -16.67945 -16.21666 -16.05128 -15.63312 -15.53807 -15.23433 -15.05796 -14.27636 -14.14617 -13.88602 -13.69988 -13.49616 -13.38969 -12.99531 -12.87044 -12.70955 -12.63283 -12.53769 -12.49530 -12.29223 -12.04553 -11.82329 -11.78255 -11.53610 -11.27249 -10.90295 -10.63565 -10.53096 -10.19270 -8.95412 -8.21739 -6.31565 1.38660 1.40037 1.53787 2.39271 2.62963 2.93944 3.10429 3.27655 3.44608 3.76752 3.83147 3.92368 4.04180 4.09924 4.23968 4.27240 4.32900 4.39763 4.43064 4.55774 4.63607 4.71558 4.72367 4.74344 4.83583 4.88261 4.93147 4.97631 5.04197 5.06327 5.11464 5.13007 5.14954 5.21772 5.29931 5.42396 5.63874 5.97428 6.04272 6.33716 6.49232 6.68231 6.84715 7.38084 8.89645 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022325 B = 0.005164 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.914107 B = 5421.354379 C = 6161.011027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.060 3.940 13 C 0.103 3.897 14 H 0.065 0.935 15 C -0.149 4.149 16 C -0.113 4.113 17 C -0.132 4.132 18 C 0.077 3.923 19 C -0.171 4.171 20 C 0.050 3.950 21 O -0.406 6.406 22 C 0.062 3.938 23 O -0.370 6.370 24 H 0.012 0.988 25 H 0.075 0.925 26 H 0.053 0.947 27 H -0.036 1.036 28 H -0.001 1.001 29 H 0.265 0.735 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.040 0.960 42 H 0.109 0.891 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.571 -21.263 -5.333 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.200 1.200 12 C -0.069 4.069 13 C 0.046 3.954 14 H 0.083 0.917 15 C -0.187 4.187 16 C -0.150 4.150 17 C -0.170 4.170 18 C 0.037 3.963 19 C -0.209 4.209 20 C -0.026 4.026 21 O -0.326 6.326 22 C -0.015 4.015 23 O -0.289 6.289 24 H 0.030 0.970 25 H 0.093 0.907 26 H 0.072 0.928 27 H -0.018 1.018 28 H 0.017 0.983 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.059 0.941 42 H 0.127 0.873 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.202 -21.266 -4.599 22.160 hybrid contribution -0.212 1.594 -0.371 1.650 sum -4.414 -19.672 -4.970 20.765 Atomic orbital electron populations 1.22193 0.87757 1.00607 0.99845 1.61944 1.07936 1.14901 1.41814 1.19380 0.93424 0.83936 0.95036 1.21471 1.34772 0.97333 1.02339 0.92289 1.25908 0.95026 0.98030 1.00700 1.70087 1.39523 1.11798 1.36179 0.85335 0.78127 0.78206 0.78957 1.18996 1.20367 1.20025 1.22161 0.99926 0.92778 0.91995 1.22157 0.96976 0.91625 0.84659 0.91730 1.22195 1.01992 0.96589 0.97954 1.21597 1.01714 0.94362 0.97366 1.21965 1.01455 0.99671 0.93895 1.22536 0.94567 0.83465 0.95730 1.23771 0.96441 1.04292 0.96371 1.23447 0.87717 0.98557 0.92885 1.88384 1.20939 1.87013 1.36250 1.23167 0.90426 1.01879 0.85989 1.87999 1.75465 1.24017 1.41437 0.96956 0.90690 0.92842 1.01830 0.98332 0.92653 0.93619 0.92424 0.89609 0.91669 0.90699 0.89295 0.88227 0.91109 0.89473 0.87097 0.87792 0.94132 0.87298 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.76 9.16 127.69 1.17 2.93 16 2 N -0.54 -24.78 4.62 -927.02 -4.29 -29.06 16 3 C 0.21 11.69 4.72 85.56 0.40 12.09 16 4 C -0.52 -30.96 8.52 25.60 0.22 -30.74 16 5 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 6 C 0.00 0.06 5.46 84.65 0.46 0.53 16 7 N -0.94 -57.87 13.29 21.45 0.28 -57.58 16 8 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.06 2.21 4.65 86.30 0.40 2.61 16 13 C 0.10 2.95 2.30 30.63 0.07 3.02 16 14 H 0.07 1.73 4.60 -2.39 -0.01 1.71 16 15 C -0.15 -3.12 5.40 30.69 0.17 -2.95 16 16 C -0.11 -1.71 5.84 30.76 0.18 -1.53 16 17 C -0.13 -2.20 4.72 30.46 0.14 -2.05 16 18 C 0.08 1.82 0.83 -10.24 -0.01 1.81 16 19 C -0.17 -3.46 5.33 31.85 0.17 -3.29 16 20 C 0.05 1.26 7.78 72.69 0.57 1.83 16 21 O -0.41 -11.98 11.37 -148.98 -1.69 -13.68 16 22 C 0.06 1.57 7.18 72.22 0.52 2.09 16 23 O -0.37 -12.03 9.74 -148.97 -1.45 -13.48 16 24 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 25 H 0.07 2.44 6.30 -2.39 -0.02 2.43 16 26 H 0.05 2.31 6.86 -2.39 -0.02 2.30 16 27 H -0.04 -2.14 8.12 -2.39 -0.02 -2.16 16 28 H 0.00 -0.09 7.93 -2.38 -0.02 -0.11 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.05 1.58 8.12 -2.39 -0.02 1.56 16 31 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.00 7.61 -2.38 -0.02 0.98 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.16 8.04 -2.39 -0.02 1.14 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.77 6.11 -2.38 -0.01 1.76 16 39 H 0.11 1.59 7.93 -2.39 -0.02 1.57 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 2.04 7.78 -2.39 -0.02 2.02 16 43 H 0.06 1.70 8.06 -2.39 -0.02 1.68 16 Total: -1.00 -71.19 329.57 0.31 -70.88 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.97 Total: 8.65 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.46 Total: -13.67 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -4.00 Total: -86.64 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -3.15 Total: -27.16 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -71.19 0.31 -70.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615773546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.824 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds