Wall clock time and date at job start Mon Mar 30 2020 01:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46900 * 110.99636 * 2 1 4 4 C 1.50706 * 109.47193 * 293.95075 * 3 2 1 5 5 H 1.08000 * 119.99570 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00196 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99736 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00211 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46969 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46801 * 240.00238 * 8 6 4 11 11 H 1.48494 * 109.47222 * 120.00204 * 8 6 4 12 12 C 1.46897 * 111.00005 * 123.95366 * 2 1 3 13 13 C 1.52991 * 109.47178 * 160.23894 * 12 2 1 14 14 H 1.09004 * 109.48736 * 57.13863 * 13 12 2 15 15 C 1.53090 * 109.48853 * 177.17710 * 13 12 2 16 16 C 1.53194 * 109.23123 * 178.10681 * 15 13 12 17 17 C 1.53270 * 108.95389 * 302.46528 * 16 15 13 18 18 C 1.52483 * 109.25635 * 55.99249 * 17 16 15 19 19 C 1.54015 * 110.15761 * 181.57227 * 18 17 16 20 20 C 1.54597 * 103.89637 * 241.49059 * 19 18 17 21 21 O 1.44470 * 104.81903 * 23.88434 * 20 19 18 22 22 C 1.44544 * 105.35900 * 319.82224 * 21 20 19 23 23 O 1.42194 * 110.99515 * 304.09874 * 18 17 16 24 24 H 1.08994 * 109.47060 * 65.05747 * 1 2 3 25 25 H 1.09001 * 109.46816 * 185.06182 * 1 2 3 26 26 H 1.09003 * 109.47158 * 305.06015 * 1 2 3 27 27 H 1.08999 * 109.47155 * 173.95748 * 3 2 1 28 28 H 1.08999 * 109.47533 * 53.95418 * 3 2 1 29 29 H 0.96998 * 119.99793 * 359.97438 * 7 6 4 30 30 H 1.09007 * 109.47025 * 280.23839 * 12 2 1 31 31 H 1.09002 * 109.47213 * 40.23409 * 12 2 1 32 32 H 1.08996 * 109.50886 * 298.03273 * 15 13 12 33 33 H 1.08999 * 109.51260 * 58.12927 * 15 13 12 34 34 H 1.08997 * 109.55157 * 62.30734 * 16 15 13 35 35 H 1.09001 * 109.55541 * 182.62103 * 16 15 13 36 36 H 1.09002 * 109.50411 * 175.92879 * 17 16 15 37 37 H 1.09001 * 109.50867 * 296.01313 * 17 16 15 38 38 H 1.09001 * 110.54259 * 0.09359 * 19 18 17 39 39 H 1.08999 * 110.54345 * 122.74371 * 19 18 17 40 40 H 1.09001 * 110.36757 * 142.71644 * 20 19 18 41 41 H 1.08995 * 110.37012 * 265.04762 * 20 19 18 42 42 H 1.09005 * 110.38766 * 281.23278 * 22 21 20 43 43 H 1.08994 * 110.39119 * 158.85253 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0276 3.3492 -1.5290 7 7 2.7136 4.0013 -0.6158 8 14 1.5826 4.1869 -3.1382 9 1 0.8146 3.2445 -3.9910 10 1 2.8242 4.5934 -3.8444 11 1 0.7561 5.3885 -2.8587 12 6 1.9955 -0.7660 1.1376 13 6 3.4456 -1.1647 0.8566 14 1 4.0376 -0.2702 0.6626 15 6 4.0170 -1.9019 2.0706 16 6 5.4529 -2.3397 1.7652 17 6 5.4484 -3.2220 0.5118 18 6 4.7983 -2.4594 -0.6376 19 6 4.7474 -3.3422 -1.8986 20 6 5.6007 -2.5674 -2.9289 21 8 6.4841 -1.7459 -2.1340 22 6 5.6734 -1.2585 -1.0410 23 8 3.4912 -2.0243 -0.2855 24 1 -0.3633 0.4334 -0.9318 25 1 -0.3633 -1.0237 0.0907 26 1 -0.3633 0.5903 0.8412 27 1 3.0797 1.3445 0.1082 28 1 1.5611 1.9274 0.8309 29 1 2.9443 3.5664 0.2199 30 1 1.9552 -0.1531 2.0381 31 1 1.3933 -1.6631 1.2814 32 1 4.0150 -1.2370 2.9342 33 1 3.4060 -2.7787 2.2848 34 1 6.0730 -1.4606 1.5903 35 1 5.8489 -2.9057 2.6084 36 1 6.4732 -3.4794 0.2443 37 1 4.8842 -4.1332 0.7101 38 1 5.1845 -4.3206 -1.6985 39 1 3.7212 -3.4477 -2.2505 40 1 6.1766 -3.2604 -3.5423 41 1 4.9641 -1.9433 -3.5560 42 1 5.0495 -0.4281 -1.3719 43 1 6.3049 -0.9515 -0.2074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615773547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:56 Heat of formation + Delta-G solvation = -96.248219 kcal Electronic energy + Delta-G solvation = -22403.155177 eV Core-core repulsion = 19254.966383 eV Total energy + Delta-G solvation = -3148.188794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50530 -37.90814 -36.30765 -33.57587 -32.95711 -32.13948 -29.86334 -27.85315 -26.91077 -26.05334 -23.92986 -23.17649 -22.40581 -21.17532 -20.23724 -19.15784 -16.99936 -16.61632 -16.37395 -15.56179 -15.22124 -14.76199 -14.41684 -14.31151 -13.89243 -13.70027 -13.59802 -13.43271 -13.03998 -12.62797 -12.24575 -12.01217 -11.75787 -11.68342 -11.36830 -11.30197 -11.24104 -11.05161 -10.96497 -10.89952 -10.65714 -10.50868 -10.29636 -10.08678 -9.82983 -9.64079 -9.00535 -8.62696 -8.34278 -7.26356 -6.34523 -4.02544 3.46081 3.50129 3.64142 3.71768 4.28114 4.51820 4.54264 4.66195 4.68978 4.84329 5.00947 5.06306 5.15740 5.27897 5.35101 5.41393 5.44108 5.56399 5.64218 5.74638 5.77912 5.81474 5.85774 5.90286 5.95086 5.98466 6.00237 6.05083 6.11449 6.15472 6.22469 6.30076 6.41458 6.68483 6.84923 6.99110 7.09398 7.63158 7.84555 8.02695 8.35003 8.63573 8.90261 9.67703 11.04645 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.006315 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.891351 B = 4432.696943 C = 5209.414663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.526 5.526 3 C 0.182 3.818 4 C -0.583 4.583 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 1.076 2.924 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.288 1.288 12 C 0.062 3.938 13 C 0.098 3.902 14 H 0.063 0.937 15 C -0.151 4.151 16 C -0.123 4.123 17 C -0.135 4.135 18 C 0.088 3.912 19 C -0.141 4.141 20 C 0.046 3.954 21 O -0.375 6.375 22 C 0.020 3.980 23 O -0.339 6.339 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.010 0.990 27 H 0.018 0.982 28 H -0.022 1.022 29 H 0.266 0.734 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.348 -15.284 2.929 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.250 5.250 3 C 0.056 3.944 4 C -0.622 4.622 5 H 0.076 0.924 6 C -0.190 4.190 7 N -0.554 5.554 8 Si 0.904 3.096 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.215 1.215 12 C -0.067 4.067 13 C 0.040 3.960 14 H 0.080 0.920 15 C -0.189 4.189 16 C -0.161 4.161 17 C -0.173 4.173 18 C 0.047 3.953 19 C -0.179 4.179 20 C -0.031 4.031 21 O -0.294 6.294 22 C -0.057 4.057 23 O -0.258 6.258 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.036 0.964 28 H -0.005 1.005 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.694 -14.101 1.501 14.937 hybrid contribution -0.394 -0.951 1.925 2.183 sum 4.300 -15.051 3.426 16.024 Atomic orbital electron populations 1.22173 0.88462 0.98787 1.01105 1.61951 1.06877 1.16724 1.39452 1.19896 0.94582 0.83016 0.96880 1.22020 1.38461 0.99540 1.02169 0.92411 1.25834 0.94512 0.94760 1.03929 1.70748 1.36820 1.39945 1.07851 0.83447 0.76307 0.75316 0.74495 1.21430 1.21351 1.21471 1.22043 0.93886 0.97804 0.92954 1.22154 0.97278 0.92054 0.84543 0.91955 1.22216 0.96523 1.01248 0.98951 1.21657 0.96917 0.99849 0.97665 1.22054 1.01284 0.98920 0.95009 1.22264 0.84956 0.93678 0.94377 1.22844 1.02426 0.98416 0.94185 1.23433 0.92455 0.93304 0.93931 1.89103 1.33686 1.67187 1.39396 1.24130 0.94293 0.97108 0.90141 1.87995 1.24568 1.66115 1.47111 0.90880 0.93626 0.97136 0.96383 1.00458 0.92414 0.94376 0.91431 0.91015 0.91193 0.91606 0.91478 0.90751 0.91087 0.90140 0.88960 0.89230 0.91642 0.90265 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 9.31 60.07 0.56 1.43 16 2 N -0.53 -11.69 4.60 -244.36 -1.12 -12.82 16 3 C 0.18 4.75 3.86 -4.97 -0.02 4.73 16 4 C -0.58 -16.77 8.58 -34.44 -0.30 -17.06 16 5 H 0.06 1.68 7.10 -52.49 -0.37 1.31 16 6 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 7 N -0.92 -28.12 13.65 55.43 0.76 -27.36 16 8 Si 1.08 25.85 29.90 -169.99 -5.08 20.77 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.06 1.13 4.68 -3.83 -0.02 1.11 16 13 C 0.10 1.65 2.49 -26.69 -0.07 1.58 16 14 H 0.06 1.19 5.76 -51.93 -0.30 0.89 16 15 C -0.15 -1.97 5.40 -26.58 -0.14 -2.11 16 16 C -0.12 -1.44 5.82 -26.49 -0.15 -1.59 16 17 C -0.13 -1.62 4.65 -26.86 -0.12 -1.74 16 18 C 0.09 1.29 1.04 -89.85 -0.09 1.19 16 19 C -0.14 -1.81 6.52 -25.36 -0.17 -1.97 16 20 C 0.05 0.60 7.64 38.00 0.29 0.89 16 21 O -0.37 -6.03 11.65 -35.23 -0.41 -6.44 16 22 C 0.02 0.33 5.62 37.67 0.21 0.54 16 23 O -0.34 -5.95 9.69 -35.23 -0.34 -6.29 16 24 H 0.07 1.57 7.01 -51.93 -0.36 1.21 16 25 H 0.04 0.78 7.85 -51.93 -0.41 0.38 16 26 H 0.01 0.20 8.08 -51.93 -0.42 -0.22 16 27 H 0.02 0.50 6.46 -51.93 -0.34 0.16 16 28 H -0.02 -0.61 7.94 -51.93 -0.41 -1.02 16 29 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 30 H 0.04 0.68 8.00 -51.93 -0.42 0.26 16 31 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.79 6.56 -51.93 -0.34 0.45 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.85 7.71 -51.93 -0.40 0.45 16 39 H 0.09 1.23 7.99 -51.93 -0.41 0.81 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.53 7.90 -51.93 -0.41 1.12 16 43 H 0.09 1.35 6.21 -51.93 -0.32 1.03 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -31.85 328.43 -8.74 -40.59 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.37 Total: -0.68 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.12 Total: -12.72 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.37 Total: -40.18 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.75 Total: -12.73 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.85 -8.74 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615773547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.661 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds