Wall clock time and date at job start Mon Mar 30 2020 01:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46900 * 110.99636 * 2 1 4 4 C 1.50706 * 109.47193 * 293.95075 * 3 2 1 5 5 H 1.08000 * 119.99570 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00196 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99736 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00211 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46969 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46801 * 240.00238 * 8 6 4 11 11 H 1.48494 * 109.47222 * 120.00204 * 8 6 4 12 12 C 1.46897 * 111.00005 * 123.95366 * 2 1 3 13 13 C 1.52991 * 109.47178 * 160.23894 * 12 2 1 14 14 H 1.09004 * 109.48736 * 57.13863 * 13 12 2 15 15 C 1.53090 * 109.48853 * 177.17710 * 13 12 2 16 16 C 1.53194 * 109.23123 * 178.10681 * 15 13 12 17 17 C 1.53270 * 108.95389 * 302.46528 * 16 15 13 18 18 C 1.52483 * 109.25635 * 55.99249 * 17 16 15 19 19 C 1.54015 * 110.15761 * 181.57227 * 18 17 16 20 20 C 1.54597 * 103.89637 * 241.49059 * 19 18 17 21 21 O 1.44470 * 104.81903 * 23.88434 * 20 19 18 22 22 C 1.44544 * 105.35900 * 319.82224 * 21 20 19 23 23 O 1.42194 * 110.99515 * 304.09874 * 18 17 16 24 24 H 1.08994 * 109.47060 * 65.05747 * 1 2 3 25 25 H 1.09001 * 109.46816 * 185.06182 * 1 2 3 26 26 H 1.09003 * 109.47158 * 305.06015 * 1 2 3 27 27 H 1.08999 * 109.47155 * 173.95748 * 3 2 1 28 28 H 1.08999 * 109.47533 * 53.95418 * 3 2 1 29 29 H 0.96998 * 119.99793 * 359.97438 * 7 6 4 30 30 H 1.09007 * 109.47025 * 280.23839 * 12 2 1 31 31 H 1.09002 * 109.47213 * 40.23409 * 12 2 1 32 32 H 1.08996 * 109.50886 * 298.03273 * 15 13 12 33 33 H 1.08999 * 109.51260 * 58.12927 * 15 13 12 34 34 H 1.08997 * 109.55157 * 62.30734 * 16 15 13 35 35 H 1.09001 * 109.55541 * 182.62103 * 16 15 13 36 36 H 1.09002 * 109.50411 * 175.92879 * 17 16 15 37 37 H 1.09001 * 109.50867 * 296.01313 * 17 16 15 38 38 H 1.09001 * 110.54259 * 0.09359 * 19 18 17 39 39 H 1.08999 * 110.54345 * 122.74371 * 19 18 17 40 40 H 1.09001 * 110.36757 * 142.71644 * 20 19 18 41 41 H 1.08995 * 110.37012 * 265.04762 * 20 19 18 42 42 H 1.09005 * 110.38766 * 281.23278 * 22 21 20 43 43 H 1.08994 * 110.39119 * 158.85253 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0276 3.3492 -1.5290 7 7 2.7136 4.0013 -0.6158 8 14 1.5826 4.1869 -3.1382 9 1 0.8146 3.2445 -3.9910 10 1 2.8242 4.5934 -3.8444 11 1 0.7561 5.3885 -2.8587 12 6 1.9955 -0.7660 1.1376 13 6 3.4456 -1.1647 0.8566 14 1 4.0376 -0.2702 0.6626 15 6 4.0170 -1.9019 2.0706 16 6 5.4529 -2.3397 1.7652 17 6 5.4484 -3.2220 0.5118 18 6 4.7983 -2.4594 -0.6376 19 6 4.7474 -3.3422 -1.8986 20 6 5.6007 -2.5674 -2.9289 21 8 6.4841 -1.7459 -2.1340 22 6 5.6734 -1.2585 -1.0410 23 8 3.4912 -2.0243 -0.2855 24 1 -0.3633 0.4334 -0.9318 25 1 -0.3633 -1.0237 0.0907 26 1 -0.3633 0.5903 0.8412 27 1 3.0797 1.3445 0.1082 28 1 1.5611 1.9274 0.8309 29 1 2.9443 3.5664 0.2199 30 1 1.9552 -0.1531 2.0381 31 1 1.3933 -1.6631 1.2814 32 1 4.0150 -1.2370 2.9342 33 1 3.4060 -2.7787 2.2848 34 1 6.0730 -1.4606 1.5903 35 1 5.8489 -2.9057 2.6084 36 1 6.4732 -3.4794 0.2443 37 1 4.8842 -4.1332 0.7101 38 1 5.1845 -4.3206 -1.6985 39 1 3.7212 -3.4477 -2.2505 40 1 6.1766 -3.2604 -3.5423 41 1 4.9641 -1.9433 -3.5560 42 1 5.0495 -0.4281 -1.3719 43 1 6.3049 -0.9515 -0.2074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615773547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:56 Heat of formation + Delta-G solvation = -118.577869 kcal Electronic energy + Delta-G solvation = -22404.123463 eV Core-core repulsion = 19254.966383 eV Total energy + Delta-G solvation = -3149.157080 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.68712 -39.26592 -37.94123 -35.00601 -34.66799 -33.51760 -31.05749 -29.24216 -28.89802 -27.33299 -25.71944 -24.39091 -23.94771 -22.35187 -21.88198 -20.31905 -18.98560 -18.03781 -17.55266 -16.81094 -16.69071 -16.19517 -15.88918 -15.78331 -15.51864 -15.30225 -14.90291 -14.63364 -14.57561 -13.80317 -13.69924 -13.38559 -13.31645 -13.20727 -13.05815 -12.79429 -12.57404 -12.52608 -12.45932 -12.26501 -11.97687 -11.95543 -11.84284 -11.59049 -11.14891 -10.85421 -10.76183 -10.59426 -10.22978 -9.08603 -8.70286 -6.39943 1.49366 1.59074 1.76317 2.49790 2.53139 3.09034 3.12252 3.17249 3.45526 3.65747 3.71990 3.83340 3.96693 4.03180 4.15022 4.19211 4.25849 4.34989 4.36110 4.46426 4.52555 4.57952 4.60075 4.67641 4.75490 4.83474 4.84791 4.86907 4.93093 4.95098 4.97742 5.05196 5.08051 5.10395 5.13611 5.33459 5.65096 5.77491 5.97592 6.36527 6.37403 6.45174 6.65250 7.39604 8.68449 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.006315 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.891351 B = 4432.696943 C = 5209.414663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.540 5.540 3 C 0.198 3.802 4 C -0.595 4.595 5 H 0.051 0.949 6 C -0.038 4.038 7 N -0.938 5.938 8 Si 1.122 2.878 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.060 3.940 13 C 0.099 3.901 14 H 0.025 0.975 15 C -0.143 4.143 16 C -0.123 4.123 17 C -0.127 4.127 18 C 0.081 3.919 19 C -0.136 4.136 20 C 0.039 3.961 21 O -0.388 6.388 22 C 0.023 3.977 23 O -0.361 6.361 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.010 0.990 27 H -0.003 1.003 28 H -0.045 1.045 29 H 0.253 0.747 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 -17.699 3.023 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.264 5.264 3 C 0.072 3.928 4 C -0.633 4.633 5 H 0.069 0.931 6 C -0.235 4.235 7 N -0.575 5.575 8 Si 0.944 3.056 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.201 1.201 12 C -0.068 4.068 13 C 0.041 3.959 14 H 0.043 0.957 15 C -0.181 4.181 16 C -0.160 4.160 17 C -0.165 4.165 18 C 0.041 3.959 19 C -0.173 4.173 20 C -0.038 4.038 21 O -0.307 6.307 22 C -0.054 4.054 23 O -0.281 6.281 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.028 0.972 27 H 0.015 0.985 28 H -0.027 1.027 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.142 0.858 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.792 -16.545 1.612 17.300 hybrid contribution -0.428 -0.240 1.884 1.947 sum 4.364 -16.785 3.496 17.692 Atomic orbital electron populations 1.22183 0.87191 1.00868 1.00057 1.61875 1.08185 1.14336 1.42000 1.19538 0.93213 0.85120 0.94969 1.22318 1.38099 0.99980 1.02953 0.93112 1.27373 0.93686 0.95880 1.06533 1.70877 1.38421 1.40211 1.08040 0.82869 0.76738 0.75148 0.70881 1.19643 1.20559 1.20057 1.22185 0.95122 0.97969 0.91518 1.22068 0.95972 0.91476 0.86375 0.95655 1.22153 0.97535 1.01434 0.96951 1.21692 0.95753 0.99855 0.98735 1.22024 1.01948 0.98899 0.93602 1.22528 0.83652 0.93239 0.96501 1.22897 1.02169 0.99381 0.92859 1.23655 0.92679 0.93353 0.94066 1.89082 1.34290 1.67681 1.39671 1.24007 0.94247 0.96798 0.90369 1.87940 1.26446 1.66006 1.47664 0.92823 0.90011 0.97152 0.98483 1.02747 0.93812 0.94153 0.88912 0.90266 0.89522 0.92690 0.88501 0.89321 0.89365 0.86818 0.89671 0.85781 0.93413 0.95085 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.81 9.31 127.69 1.19 3.00 16 2 N -0.54 -24.46 4.60 -927.03 -4.26 -28.72 16 3 C 0.20 10.85 3.86 85.56 0.33 11.18 16 4 C -0.60 -35.37 8.58 25.60 0.22 -35.15 16 5 H 0.05 3.03 7.10 -2.91 -0.02 3.01 16 6 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 7 N -0.94 -59.31 13.65 21.45 0.29 -59.01 16 8 Si 1.12 52.36 29.90 68.60 2.05 54.41 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 C 0.06 2.17 4.68 86.30 0.40 2.58 16 13 C 0.10 3.36 2.49 30.62 0.08 3.44 16 14 H 0.03 1.04 5.76 -2.39 -0.01 1.02 16 15 C -0.14 -3.44 5.40 30.69 0.17 -3.27 16 16 C -0.12 -2.56 5.82 30.75 0.18 -2.38 16 17 C -0.13 -2.67 4.65 30.51 0.14 -2.52 16 18 C 0.08 2.30 1.04 -10.29 -0.01 2.28 16 19 C -0.14 -3.23 6.52 31.48 0.21 -3.02 16 20 C 0.04 0.99 7.64 72.53 0.55 1.55 16 21 O -0.39 -12.47 11.65 -148.98 -1.74 -14.20 16 22 C 0.02 0.77 5.62 72.31 0.41 1.18 16 23 O -0.36 -12.59 9.69 -148.98 -1.44 -14.03 16 24 H 0.05 2.32 7.01 -2.39 -0.02 2.31 16 25 H 0.08 2.66 7.85 -2.39 -0.02 2.64 16 26 H 0.01 0.40 8.08 -2.39 -0.02 0.38 16 27 H 0.00 -0.16 6.46 -2.39 -0.02 -0.18 16 28 H -0.04 -2.61 7.94 -2.39 -0.02 -2.63 16 29 H 0.25 16.20 7.22 -92.71 -0.67 15.54 16 30 H 0.04 1.44 8.00 -2.38 -0.02 1.42 16 31 H 0.09 2.87 7.75 -2.39 -0.02 2.85 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.26 6.56 -2.39 -0.02 1.25 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.11 1.95 7.71 -2.39 -0.02 1.93 16 39 H 0.08 2.16 7.99 -2.39 -0.02 2.14 16 40 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.03 1.31 7.90 -2.38 -0.02 1.30 16 43 H 0.10 3.03 6.21 -2.39 -0.01 3.01 16 Total: -1.00 -71.49 328.43 0.29 -71.20 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.07 Total: 13.28 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 4.32 Total: -22.92 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -3.97 Total: -87.74 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -3.18 Total: -28.23 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 2.05 Total: 54.41 kcal Total: -71.49 0.29 -71.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615773547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.376 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds