Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99570 * 2 1 4 4 C 1.50697 * 109.47700 * 66.04418 * 3 2 1 5 5 H 1.08001 * 119.99537 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00547 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99561 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00180 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47138 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46963 * 119.99937 * 8 6 4 11 11 H 1.48499 * 109.47070 * 239.99915 * 8 6 4 12 12 C 1.46896 * 111.00112 * 236.04632 * 2 1 3 13 13 C 1.53006 * 109.46958 * 199.85112 * 12 2 1 14 14 H 1.09003 * 109.49006 * 300.50289 * 13 12 2 15 15 C 1.53093 * 109.48675 * 180.45988 * 13 12 2 16 16 C 1.53185 * 109.27134 * 181.86387 * 15 13 12 17 17 C 1.53379 * 108.90955 * 57.50255 * 16 15 13 18 18 C 1.52485 * 109.27527 * 304.04819 * 17 16 15 19 19 C 1.54015 * 110.17601 * 178.43058 * 18 17 16 20 20 C 1.54604 * 103.88879 * 118.27490 * 19 18 17 21 21 O 1.44464 * 104.82116 * 23.88787 * 20 19 18 22 22 C 1.44546 * 105.36259 * 319.82142 * 21 20 19 23 23 O 1.42203 * 110.98547 * 55.90938 * 18 17 16 24 24 H 1.09007 * 109.47041 * 188.78127 * 1 2 3 25 25 H 1.08997 * 109.47631 * 308.77603 * 1 2 3 26 26 H 1.09000 * 109.47436 * 68.77939 * 1 2 3 27 27 H 1.08996 * 109.47175 * 186.04948 * 3 2 1 28 28 H 1.09007 * 109.47144 * 306.04493 * 3 2 1 29 29 H 0.97001 * 119.99676 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47312 * 79.85309 * 12 2 1 31 31 H 1.09000 * 109.46943 * 319.84958 * 12 2 1 32 32 H 1.08996 * 109.50847 * 301.81520 * 15 13 12 33 33 H 1.08997 * 109.50911 * 61.91015 * 15 13 12 34 34 H 1.08996 * 109.55647 * 177.39066 * 16 15 13 35 35 H 1.08997 * 109.55873 * 297.70107 * 16 15 13 36 36 H 1.09010 * 109.49863 * 184.11352 * 17 16 15 37 37 H 1.09002 * 109.53544 * 64.01317 * 17 16 15 38 38 H 1.08991 * 110.54603 * 236.87850 * 19 18 17 39 39 H 1.09005 * 110.53891 * 359.67654 * 19 18 17 40 40 H 1.08991 * 110.36713 * 142.72742 * 20 19 18 41 41 H 1.09003 * 110.36506 * 265.05498 * 20 19 18 42 42 H 1.08998 * 110.39009 * 281.22751 * 22 21 20 43 43 H 1.08997 * 110.39388 * 158.83681 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0473 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0265 3.3497 1.5284 7 7 2.7117 4.0020 0.6148 8 14 1.5827 4.1870 3.1381 9 1 0.8155 3.2444 3.9913 10 1 2.8246 4.5947 3.8428 11 1 0.7546 5.3878 2.8595 12 6 1.9954 -0.7659 -1.1375 13 6 3.4449 -1.1666 -0.8555 14 1 4.0465 -0.2707 -0.7018 15 6 3.9976 -1.9551 -2.0457 16 6 5.4330 -2.3936 -1.7389 17 6 5.4337 -3.2267 -0.4511 18 6 4.8018 -2.4145 0.6741 19 6 4.7562 -3.2469 1.9692 20 6 5.6314 -2.4429 2.9581 21 8 5.6020 -1.0873 2.4596 22 6 5.6902 -1.2060 1.0218 23 8 3.4947 -1.9822 0.3182 24 1 -0.3633 -1.0157 0.1569 25 1 -0.3634 0.6436 0.8011 26 1 -0.3634 0.3720 -0.9580 27 1 3.0795 1.3445 -0.1083 28 1 1.5609 1.9274 -0.8310 29 1 2.9856 4.9184 0.7764 30 1 1.9566 -0.1526 -2.0377 31 1 1.3923 -1.6623 -1.2823 32 1 3.3775 -2.8345 -2.2193 33 1 3.9917 -1.3242 -2.9345 34 1 5.8150 -2.9948 -2.5639 35 1 6.0624 -1.5139 -1.6045 36 1 6.4591 -3.4824 -0.1838 37 1 4.8597 -4.1400 -0.6076 38 1 3.7337 -3.3240 2.3386 39 1 5.1793 -4.2375 1.8021 40 1 5.2084 -2.4874 3.9616 41 1 6.6522 -2.8250 2.9584 42 1 6.7204 -1.3924 0.7186 43 1 5.3094 -0.3043 0.5422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615773548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = -89.624473 kcal Electronic energy + Delta-G solvation = -22441.988437 eV Core-core repulsion = 19294.086870 eV Total energy + Delta-G solvation = -3147.901567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42566 -37.74168 -36.10989 -33.48030 -32.73847 -32.07993 -29.74668 -27.87946 -27.18338 -25.90707 -23.92956 -23.18886 -22.32942 -21.04634 -19.91693 -19.19158 -16.82812 -16.26316 -15.90105 -15.66714 -15.26208 -14.75350 -14.48643 -14.31473 -14.00139 -13.66100 -13.48216 -13.07265 -12.73777 -12.38671 -12.29447 -11.91673 -11.83755 -11.61413 -11.30038 -11.26622 -11.20872 -10.97401 -10.89513 -10.82429 -10.57559 -10.41396 -10.33496 -9.92751 -9.65839 -9.50282 -9.06277 -8.86877 -8.34415 -7.08766 -5.94375 -3.93730 3.37966 3.45088 3.51001 3.92858 4.17176 4.51118 4.59809 4.75913 4.81551 4.96517 5.06525 5.10835 5.19481 5.27192 5.41508 5.44316 5.50154 5.59286 5.64635 5.71431 5.79421 5.82471 5.88553 5.95084 6.03150 6.04032 6.09547 6.15518 6.20461 6.24962 6.35926 6.42240 6.53084 6.82843 6.99826 7.35262 7.39850 7.76309 7.92233 8.18743 8.31150 8.65983 9.13908 9.69933 11.16910 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.006512 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.781094 B = 4298.947390 C = 5082.361413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.499 4.499 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.065 3.935 13 C 0.095 3.905 14 H 0.066 0.934 15 C -0.151 4.151 16 C -0.122 4.122 17 C -0.137 4.137 18 C 0.088 3.912 19 C -0.141 4.141 20 C 0.045 3.955 21 O -0.360 6.360 22 C 0.023 3.977 23 O -0.334 6.334 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.006 0.994 27 H 0.028 0.972 28 H -0.013 1.013 29 H 0.259 0.741 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -15.576 -3.562 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.537 4.537 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.542 5.542 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.213 1.213 12 C -0.064 4.064 13 C 0.037 3.963 14 H 0.083 0.917 15 C -0.190 4.190 16 C -0.160 4.160 17 C -0.175 4.175 18 C 0.047 3.953 19 C -0.178 4.178 20 C -0.033 4.033 21 O -0.278 6.278 22 C -0.054 4.054 23 O -0.252 6.252 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.005 0.995 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.060 -15.475 -2.921 16.874 hybrid contribution -0.123 0.866 -0.289 0.922 sum 5.937 -14.609 -3.210 16.093 Atomic orbital electron populations 1.22203 0.88866 0.99988 0.99878 1.62023 1.06586 1.17499 1.39410 1.19761 0.95266 0.81698 0.96500 1.21195 1.34271 0.96651 1.01633 0.91823 1.24969 0.95397 0.97401 0.96885 1.69969 1.38828 1.11309 1.34055 0.86463 0.78130 0.79198 0.83793 1.19649 1.21028 1.21264 1.21984 0.93619 0.97717 0.93057 1.22214 0.97581 0.92617 0.83868 0.91661 1.22221 0.96414 1.01100 0.99236 1.21634 0.97135 0.99979 0.97238 1.22108 1.00957 0.99118 0.95316 1.22288 0.85558 0.93379 0.94095 1.22899 1.02734 0.98284 0.93931 1.23411 0.98214 0.83103 0.98526 1.89271 1.94869 1.24573 1.19052 1.24045 0.98288 1.00305 0.82752 1.88031 1.24309 1.68498 1.44405 0.93698 0.90557 0.97508 0.95430 0.99480 0.93150 0.94326 0.91746 0.91274 0.90977 0.91584 0.91663 0.91132 0.90968 0.89019 0.90098 0.89059 0.92780 0.92345 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.37 60.06 0.56 1.37 16 2 N -0.53 -12.10 4.56 -244.37 -1.11 -13.22 16 3 C 0.19 5.19 4.55 -4.98 -0.02 5.16 16 4 C -0.50 -14.57 8.39 -34.44 -0.29 -14.86 16 5 H 0.06 1.87 7.17 -52.49 -0.38 1.49 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 8 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 C 0.07 1.22 4.69 -3.82 -0.02 1.20 16 13 C 0.10 1.65 2.46 -26.68 -0.07 1.58 16 14 H 0.07 1.28 4.87 -51.93 -0.25 1.03 16 15 C -0.15 -1.98 5.40 -26.59 -0.14 -2.12 16 16 C -0.12 -1.38 5.84 -26.44 -0.15 -1.54 16 17 C -0.14 -1.56 4.58 -26.80 -0.12 -1.68 16 18 C 0.09 1.29 1.04 -89.85 -0.09 1.20 16 19 C -0.14 -1.82 6.53 -25.36 -0.17 -1.99 16 20 C 0.04 0.60 7.64 38.00 0.29 0.89 16 21 O -0.36 -6.64 11.65 -35.23 -0.41 -7.05 16 22 C 0.02 0.38 5.91 37.66 0.22 0.60 16 23 O -0.33 -6.08 9.70 -35.23 -0.34 -6.42 16 24 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.08 1.68 6.67 -51.93 -0.35 1.33 16 26 H 0.01 0.13 8.13 -51.93 -0.42 -0.30 16 27 H 0.03 0.79 6.63 -51.93 -0.34 0.44 16 28 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 31 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.76 7.59 -51.93 -0.39 0.36 16 36 H 0.07 0.68 8.03 -51.92 -0.42 0.26 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.30 7.99 -51.93 -0.41 0.89 16 39 H 0.08 0.80 7.71 -51.93 -0.40 0.40 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.79 7.76 -51.93 -0.40 0.39 16 43 H 0.10 1.91 6.01 -51.93 -0.31 1.60 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -32.72 329.81 -8.70 -41.42 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.43 Total: -1.81 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.10 Total: -8.71 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.38 Total: -39.90 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.75 Total: -13.47 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.72 -8.70 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615773548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.203 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds