Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99570 * 2 1 4 4 C 1.50697 * 109.47700 * 66.04418 * 3 2 1 5 5 H 1.08001 * 119.99537 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00547 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99561 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00180 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47138 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46963 * 119.99937 * 8 6 4 11 11 H 1.48499 * 109.47070 * 239.99915 * 8 6 4 12 12 C 1.46896 * 111.00112 * 236.04632 * 2 1 3 13 13 C 1.53006 * 109.46958 * 199.85112 * 12 2 1 14 14 H 1.09003 * 109.49006 * 300.50289 * 13 12 2 15 15 C 1.53093 * 109.48675 * 180.45988 * 13 12 2 16 16 C 1.53185 * 109.27134 * 181.86387 * 15 13 12 17 17 C 1.53379 * 108.90955 * 57.50255 * 16 15 13 18 18 C 1.52485 * 109.27527 * 304.04819 * 17 16 15 19 19 C 1.54015 * 110.17601 * 178.43058 * 18 17 16 20 20 C 1.54604 * 103.88879 * 118.27490 * 19 18 17 21 21 O 1.44464 * 104.82116 * 23.88787 * 20 19 18 22 22 C 1.44546 * 105.36259 * 319.82142 * 21 20 19 23 23 O 1.42203 * 110.98547 * 55.90938 * 18 17 16 24 24 H 1.09007 * 109.47041 * 188.78127 * 1 2 3 25 25 H 1.08997 * 109.47631 * 308.77603 * 1 2 3 26 26 H 1.09000 * 109.47436 * 68.77939 * 1 2 3 27 27 H 1.08996 * 109.47175 * 186.04948 * 3 2 1 28 28 H 1.09007 * 109.47144 * 306.04493 * 3 2 1 29 29 H 0.97001 * 119.99676 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47312 * 79.85309 * 12 2 1 31 31 H 1.09000 * 109.46943 * 319.84958 * 12 2 1 32 32 H 1.08996 * 109.50847 * 301.81520 * 15 13 12 33 33 H 1.08997 * 109.50911 * 61.91015 * 15 13 12 34 34 H 1.08996 * 109.55647 * 177.39066 * 16 15 13 35 35 H 1.08997 * 109.55873 * 297.70107 * 16 15 13 36 36 H 1.09010 * 109.49863 * 184.11352 * 17 16 15 37 37 H 1.09002 * 109.53544 * 64.01317 * 17 16 15 38 38 H 1.08991 * 110.54603 * 236.87850 * 19 18 17 39 39 H 1.09005 * 110.53891 * 359.67654 * 19 18 17 40 40 H 1.08991 * 110.36713 * 142.72742 * 20 19 18 41 41 H 1.09003 * 110.36506 * 265.05498 * 20 19 18 42 42 H 1.08998 * 110.39009 * 281.22751 * 22 21 20 43 43 H 1.08997 * 110.39388 * 158.83681 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0473 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0265 3.3497 1.5284 7 7 2.7117 4.0020 0.6148 8 14 1.5827 4.1870 3.1381 9 1 0.8155 3.2444 3.9913 10 1 2.8246 4.5947 3.8428 11 1 0.7546 5.3878 2.8595 12 6 1.9954 -0.7659 -1.1375 13 6 3.4449 -1.1666 -0.8555 14 1 4.0465 -0.2707 -0.7018 15 6 3.9976 -1.9551 -2.0457 16 6 5.4330 -2.3936 -1.7389 17 6 5.4337 -3.2267 -0.4511 18 6 4.8018 -2.4145 0.6741 19 6 4.7562 -3.2469 1.9692 20 6 5.6314 -2.4429 2.9581 21 8 5.6020 -1.0873 2.4596 22 6 5.6902 -1.2060 1.0218 23 8 3.4947 -1.9822 0.3182 24 1 -0.3633 -1.0157 0.1569 25 1 -0.3634 0.6436 0.8011 26 1 -0.3634 0.3720 -0.9580 27 1 3.0795 1.3445 -0.1083 28 1 1.5609 1.9274 -0.8310 29 1 2.9856 4.9184 0.7764 30 1 1.9566 -0.1526 -2.0377 31 1 1.3923 -1.6623 -1.2823 32 1 3.3775 -2.8345 -2.2193 33 1 3.9917 -1.3242 -2.9345 34 1 5.8150 -2.9948 -2.5639 35 1 6.0624 -1.5139 -1.6045 36 1 6.4591 -3.4824 -0.1838 37 1 4.8597 -4.1400 -0.6076 38 1 3.7337 -3.3240 2.3386 39 1 5.1793 -4.2375 1.8021 40 1 5.2084 -2.4874 3.9616 41 1 6.6522 -2.8250 2.9584 42 1 6.7204 -1.3924 0.7186 43 1 5.3094 -0.3043 0.5422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615773548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = -113.120509 kcal Electronic energy + Delta-G solvation = -22443.007302 eV Core-core repulsion = 19294.086870 eV Total energy + Delta-G solvation = -3148.920432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59721 -39.10931 -37.76231 -34.75496 -34.56055 -33.54797 -30.95503 -29.46993 -28.99999 -27.20247 -25.72580 -24.30585 -23.84233 -22.21305 -21.61011 -20.36507 -18.59660 -17.96262 -17.14178 -16.91327 -16.55170 -16.43235 -16.15813 -15.60919 -15.37391 -15.28882 -14.91169 -14.30358 -14.10129 -13.93522 -13.57526 -13.47594 -13.23018 -13.22377 -12.80045 -12.70564 -12.57087 -12.47948 -12.38259 -12.26428 -12.12570 -11.92243 -11.74884 -11.50113 -11.26639 -11.00659 -10.68565 -10.62019 -10.08853 -8.93702 -8.21646 -6.30127 1.36532 1.38788 1.51930 2.39079 2.72158 3.05361 3.10705 3.29766 3.53723 3.79182 3.89678 3.92324 4.06083 4.11050 4.18679 4.25392 4.35877 4.39458 4.44231 4.49991 4.65997 4.67127 4.74232 4.77642 4.79630 4.84982 4.94244 5.00195 5.04902 5.07715 5.11017 5.16022 5.17589 5.22704 5.29045 5.40287 5.64452 5.85190 6.06483 6.36356 6.52203 6.69907 6.85445 7.38814 8.89787 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.006512 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.781094 B = 4298.947390 C = 5082.361413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.546 5.546 3 C 0.214 3.786 4 C -0.519 4.519 5 H 0.057 0.943 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.062 3.938 13 C 0.097 3.903 14 H 0.027 0.973 15 C -0.143 4.143 16 C -0.122 4.122 17 C -0.129 4.129 18 C 0.078 3.922 19 C -0.136 4.136 20 C 0.038 3.962 21 O -0.408 6.408 22 C 0.021 3.979 23 O -0.363 6.363 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.015 0.985 27 H -0.001 1.001 28 H -0.040 1.040 29 H 0.264 0.736 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 -17.977 -3.532 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.270 5.270 3 C 0.088 3.912 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.791 3.209 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.198 1.198 12 C -0.066 4.066 13 C 0.039 3.961 14 H 0.045 0.955 15 C -0.181 4.181 16 C -0.159 4.159 17 C -0.166 4.166 18 C 0.038 3.962 19 C -0.173 4.173 20 C -0.038 4.038 21 O -0.328 6.328 22 C -0.056 4.056 23 O -0.282 6.282 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.017 0.983 28 H -0.022 1.022 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.590 -17.900 -2.900 19.294 hybrid contribution -0.285 1.595 -0.288 1.645 sum 6.305 -16.305 -3.188 17.770 Atomic orbital electron populations 1.22206 0.87498 1.01445 0.99535 1.61947 1.08000 1.15059 1.41958 1.19331 0.93390 0.83825 0.94682 1.21470 1.34549 0.97349 1.02373 0.92481 1.25882 0.95071 0.98059 1.00621 1.70086 1.39522 1.11795 1.36063 0.85380 0.78074 0.78298 0.79178 1.18983 1.20572 1.19827 1.22134 0.95057 0.97821 0.91566 1.22099 0.96040 0.92159 0.85755 0.95498 1.22154 0.97849 1.00999 0.97145 1.21675 0.95573 1.00183 0.98507 1.22087 1.02314 0.98666 0.93536 1.22609 0.84042 0.93181 0.96329 1.22953 1.01891 0.99803 0.92649 1.23703 1.00326 0.81076 0.98714 1.89204 1.95285 1.27974 1.20287 1.24091 1.00112 0.99522 0.81840 1.87959 1.26753 1.68472 1.45020 0.90580 0.92681 0.96652 0.98283 1.02228 0.92754 0.94313 0.89292 0.89756 0.90391 0.88495 0.92640 0.88435 0.89478 0.90918 0.86052 0.88679 0.89532 0.89508 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 9.37 127.69 1.20 2.90 16 2 N -0.55 -25.65 4.56 -927.05 -4.23 -29.88 16 3 C 0.21 12.17 4.55 85.56 0.39 12.56 16 4 C -0.52 -31.54 8.39 25.60 0.21 -31.33 16 5 H 0.06 3.47 7.17 -2.91 -0.02 3.44 16 6 C 0.00 0.08 5.46 84.65 0.46 0.54 16 7 N -0.93 -58.65 13.29 21.45 0.28 -58.37 16 8 Si 0.97 47.06 29.54 68.60 2.03 49.09 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 12 C 0.06 2.36 4.69 86.31 0.40 2.77 16 13 C 0.10 3.45 2.46 30.63 0.08 3.52 16 14 H 0.03 1.15 4.87 -2.39 -0.01 1.14 16 15 C -0.14 -3.53 5.40 30.69 0.17 -3.37 16 16 C -0.12 -2.44 5.84 30.78 0.18 -2.26 16 17 C -0.13 -2.48 4.58 30.55 0.14 -2.34 16 18 C 0.08 2.22 1.04 -10.29 -0.01 2.21 16 19 C -0.14 -3.24 6.53 31.48 0.21 -3.04 16 20 C 0.04 0.97 7.64 72.53 0.55 1.52 16 21 O -0.41 -15.44 11.65 -148.98 -1.74 -17.17 16 22 C 0.02 0.70 5.91 72.31 0.43 1.13 16 23 O -0.36 -13.28 9.70 -148.98 -1.44 -14.73 16 24 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 25 H 0.05 2.47 6.67 -2.39 -0.02 2.46 16 26 H 0.01 0.59 8.13 -2.39 -0.02 0.57 16 27 H 0.00 -0.05 6.63 -2.39 -0.02 -0.07 16 28 H -0.04 -2.42 8.12 -2.38 -0.02 -2.44 16 29 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.04 1.45 8.00 -2.39 -0.02 1.43 16 31 H 0.09 2.90 7.94 -2.39 -0.02 2.88 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.22 7.59 -2.39 -0.02 1.20 16 36 H 0.10 1.40 8.03 -2.38 -0.02 1.38 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 2.01 7.99 -2.39 -0.02 1.99 16 39 H 0.12 1.88 7.71 -2.38 -0.02 1.86 16 40 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.09 2.28 7.76 -2.39 -0.02 2.26 16 43 H 0.06 2.46 6.01 -2.39 -0.01 2.44 16 Total: -1.00 -74.79 329.81 0.27 -74.51 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.97 Total: 11.72 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.40 Total: -15.18 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -3.94 Total: -88.25 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -3.18 Total: -31.90 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -74.79 0.27 -74.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615773548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.607 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds