Wall clock time and date at job start Mon Mar 30 2020 01:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 110.99820 * 2 1 4 4 C 1.50699 * 109.46724 * 293.95166 * 3 2 1 5 5 H 1.07999 * 120.00803 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 C 1.46896 * 111.00119 * 123.95060 * 2 1 3 13 13 C 1.52999 * 109.47249 * 66.04567 * 12 2 1 14 14 H 1.08999 * 109.49149 * 305.04178 * 13 12 2 15 15 C 1.53088 * 109.49171 * 184.99539 * 13 12 2 16 16 C 1.53186 * 109.24506 * 181.90538 * 15 13 12 17 17 C 1.53272 * 108.96460 * 57.50162 * 16 15 13 18 18 C 1.52495 * 109.23710 * 303.99899 * 17 16 15 19 19 C 1.54324 * 109.99566 * 293.87372 * 18 17 16 20 20 C 1.55096 * 101.97871 * 220.77306 * 19 18 17 21 21 O 1.44431 * 103.55003 * 36.64235 * 20 19 18 22 22 C 1.43890 * 106.99678 * 320.25208 * 21 20 19 23 23 O 1.42231 * 110.94859 * 55.98073 * 18 17 16 24 24 H 1.08994 * 109.47361 * 60.00456 * 1 2 3 25 25 H 1.09004 * 109.47370 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47658 * 300.00007 * 1 2 3 27 27 H 1.09004 * 109.47135 * 173.95531 * 3 2 1 28 28 H 1.08997 * 109.47656 * 53.95145 * 3 2 1 29 29 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47240 * 186.04841 * 12 2 1 31 31 H 1.09000 * 109.47781 * 306.04691 * 12 2 1 32 32 H 1.09000 * 109.51207 * 301.84112 * 15 13 12 33 33 H 1.09008 * 109.50405 * 61.97851 * 15 13 12 34 34 H 1.09001 * 109.55808 * 177.34489 * 16 15 13 35 35 H 1.08999 * 109.55616 * 297.55107 * 16 15 13 36 36 H 1.08992 * 109.51453 * 63.93053 * 17 16 15 37 37 H 1.09001 * 109.51066 * 184.07900 * 17 16 15 38 38 H 1.09001 * 110.92786 * 338.94242 * 19 18 17 39 39 H 1.09003 * 110.93174 * 102.60099 * 19 18 17 40 40 H 1.09002 * 110.61128 * 278.12294 * 20 19 18 41 41 H 1.09000 * 110.61099 * 155.15364 * 20 19 18 42 42 H 1.08991 * 109.90441 * 266.98987 * 22 21 20 43 43 H 1.08997 * 109.90446 * 145.73077 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6368 2.0470 -1.2985 5 1 1.0738 1.5114 -2.0485 6 6 2.0275 3.3491 -1.5290 7 7 1.7142 3.9389 -2.6620 8 14 3.0018 4.2754 -0.2321 9 1 4.4541 4.0618 -0.4575 10 1 2.6315 3.7754 1.1163 11 1 2.6947 5.7254 -0.3239 12 6 1.9954 -0.7659 1.1376 13 6 1.6314 -2.2425 0.9705 14 1 0.5533 -2.3392 0.8427 15 6 2.0701 -3.0206 2.2137 16 6 1.7463 -4.5053 2.0205 17 6 2.4493 -5.0079 0.7547 18 6 2.0286 -4.1448 -0.4300 19 6 0.5270 -4.3470 -0.7233 20 6 0.5040 -4.3842 -2.2737 21 8 1.7243 -5.0779 -2.6137 22 6 2.7407 -4.6088 -1.7097 23 8 2.2978 -2.7709 -0.1793 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.0797 1.3444 0.1082 28 1 1.5610 1.9274 0.8308 29 1 1.9894 4.8547 -2.8243 30 1 3.0797 -0.6610 1.1756 31 1 1.5611 -0.3872 2.0628 32 1 3.1433 -2.8982 2.3600 33 1 1.5376 -2.6425 3.0865 34 1 2.0992 -5.0710 2.8828 35 1 0.6688 -4.6332 1.9165 36 1 3.5291 -4.9423 0.8875 37 1 2.1670 -6.0441 0.5685 38 1 0.1722 -5.2894 -0.3060 39 1 -0.0598 -3.5099 -0.3451 40 1 0.5107 -3.3735 -2.6818 41 1 -0.3642 -4.9376 -2.6314 42 1 3.2795 -3.7742 -2.1580 43 1 3.4325 -5.4182 -1.4767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615773549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:00 Heat of formation + Delta-G solvation = -86.101256 kcal Electronic energy + Delta-G solvation = -22148.743107 eV Core-core repulsion = 19000.994318 eV Total energy + Delta-G solvation = -3147.748789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66205 -38.03792 -36.37034 -33.69550 -32.80587 -31.98695 -30.13557 -28.50653 -27.43887 -26.15254 -24.41829 -22.89863 -22.21949 -21.32553 -20.01963 -19.23894 -17.06416 -16.76721 -16.23800 -15.99772 -15.03720 -14.94916 -14.75764 -14.48419 -14.16980 -14.00638 -13.62049 -13.30162 -12.74964 -12.65815 -12.50709 -12.28686 -12.07835 -11.75335 -11.69820 -11.52918 -11.28100 -11.06416 -10.99252 -10.93394 -10.73962 -10.49039 -10.41490 -10.03518 -9.73526 -9.61246 -9.25498 -9.18671 -8.53905 -7.31056 -6.02082 -3.98909 3.30128 3.37171 3.38659 3.66407 3.93855 4.39166 4.44229 4.53079 4.62899 4.72259 4.85918 5.01017 5.05156 5.18144 5.24476 5.27256 5.31339 5.39692 5.48329 5.63896 5.66987 5.71627 5.73942 5.79933 5.86685 5.88900 5.90390 5.94405 6.04315 6.06712 6.13040 6.23417 6.33235 6.68135 6.76814 6.86727 7.00910 7.50640 7.63384 7.92312 8.08502 8.69425 9.07142 9.59690 11.11158 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.005067 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.953667 B = 5524.130832 C = 6132.596371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.522 5.522 3 C 0.162 3.838 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.269 1.269 11 H -0.286 1.286 12 C 0.059 3.941 13 C 0.096 3.904 14 H 0.061 0.939 15 C -0.153 4.153 16 C -0.119 4.119 17 C -0.137 4.137 18 C 0.085 3.915 19 C -0.181 4.181 20 C 0.050 3.950 21 O -0.379 6.379 22 C 0.061 3.939 23 O -0.338 6.338 24 H 0.079 0.921 25 H 0.044 0.956 26 H 0.010 0.990 27 H 0.024 0.976 28 H -0.013 1.013 29 H 0.263 0.737 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 -18.634 9.498 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.245 5.245 3 C 0.036 3.964 4 C -0.544 4.544 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.194 1.194 11 H -0.212 1.212 12 C -0.070 4.070 13 C 0.038 3.962 14 H 0.079 0.921 15 C -0.191 4.191 16 C -0.157 4.157 17 C -0.175 4.175 18 C 0.045 3.955 19 C -0.218 4.218 20 C -0.027 4.027 21 O -0.298 6.298 22 C -0.015 4.015 23 O -0.256 6.256 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.029 0.971 27 H 0.042 0.958 28 H 0.004 0.996 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.801 -18.713 8.677 20.642 hybrid contribution 0.065 1.075 1.789 2.088 sum -0.736 -17.638 10.466 20.522 Atomic orbital electron populations 1.22283 0.88639 0.99150 1.01162 1.61877 1.06939 1.16207 1.39480 1.20193 0.94930 0.84036 0.97239 1.21031 1.35443 0.97106 1.00841 0.90120 1.24899 0.95840 0.97367 0.95272 1.69897 1.47011 1.13271 1.23861 0.86874 0.80983 0.79239 0.82706 1.20134 1.19385 1.21244 1.22103 1.01076 0.90942 0.92842 1.22246 0.96239 0.93284 0.84467 0.92123 1.22222 1.02667 0.95433 0.98755 1.21589 1.00545 0.95979 0.97560 1.22079 1.01370 0.99232 0.94803 1.22320 0.93834 0.84225 0.95162 1.23707 0.97401 1.03103 0.97627 1.23553 0.87578 0.97971 0.93562 1.88875 1.19792 1.64796 1.56333 1.23055 0.91009 0.99644 0.87823 1.88060 1.69830 1.21620 1.46113 0.90207 0.93684 0.97132 0.95823 0.99567 0.92716 0.90576 0.94497 0.90925 0.91040 0.91571 0.91830 0.90885 0.90840 0.90240 0.89375 0.91061 0.89210 0.90465 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.17 60.06 0.55 1.24 16 2 N -0.52 -11.09 4.70 -244.38 -1.15 -12.24 16 3 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 4 C -0.51 -14.60 9.07 -34.44 -0.31 -14.91 16 5 H 0.08 2.54 7.35 -52.49 -0.39 2.15 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 8 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 C 0.06 1.01 4.63 -3.83 -0.02 0.99 16 13 C 0.10 1.36 2.34 -26.69 -0.06 1.30 16 14 H 0.06 0.85 4.35 -51.93 -0.23 0.62 16 15 C -0.15 -1.69 5.40 -26.59 -0.14 -1.83 16 16 C -0.12 -1.12 5.82 -26.49 -0.15 -1.27 16 17 C -0.14 -1.37 4.56 -26.85 -0.12 -1.50 16 18 C 0.09 1.07 0.98 -89.87 -0.09 0.98 16 19 C -0.18 -2.08 5.33 -24.93 -0.13 -2.22 16 20 C 0.05 0.62 7.73 38.27 0.30 0.92 16 21 O -0.38 -5.35 11.53 -35.23 -0.41 -5.75 16 22 C 0.06 0.80 7.19 37.48 0.27 1.07 16 23 O -0.34 -5.35 9.76 -35.23 -0.34 -5.70 16 24 H 0.08 1.71 6.86 -51.93 -0.36 1.35 16 25 H 0.04 0.73 6.21 -51.93 -0.32 0.41 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.02 0.59 7.36 -51.93 -0.38 0.21 16 28 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 31 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.57 7.53 -51.93 -0.39 0.18 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 38 H 0.08 0.78 7.75 -51.93 -0.40 0.37 16 39 H 0.09 1.06 6.06 -51.93 -0.31 0.75 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.12 7.96 -51.93 -0.41 0.71 16 43 H 0.09 0.96 7.68 -51.93 -0.40 0.56 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -31.86 325.34 -8.27 -40.13 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.34 Total: -1.90 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.03 Total: -9.36 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.38 Total: -39.37 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.75 Total: -11.45 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.86 -8.27 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615773549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.976 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds