Wall clock time and date at job start Mon Mar 30 2020 01:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 110.99820 * 2 1 4 4 C 1.50699 * 109.46724 * 293.95166 * 3 2 1 5 5 H 1.07999 * 120.00803 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 C 1.46896 * 111.00119 * 123.95060 * 2 1 3 13 13 C 1.52999 * 109.47249 * 66.04567 * 12 2 1 14 14 H 1.08999 * 109.49149 * 305.04178 * 13 12 2 15 15 C 1.53088 * 109.49171 * 184.99539 * 13 12 2 16 16 C 1.53186 * 109.24506 * 181.90538 * 15 13 12 17 17 C 1.53272 * 108.96460 * 57.50162 * 16 15 13 18 18 C 1.52495 * 109.23710 * 303.99899 * 17 16 15 19 19 C 1.54324 * 109.99566 * 293.87372 * 18 17 16 20 20 C 1.55096 * 101.97871 * 220.77306 * 19 18 17 21 21 O 1.44431 * 103.55003 * 36.64235 * 20 19 18 22 22 C 1.43890 * 106.99678 * 320.25208 * 21 20 19 23 23 O 1.42231 * 110.94859 * 55.98073 * 18 17 16 24 24 H 1.08994 * 109.47361 * 60.00456 * 1 2 3 25 25 H 1.09004 * 109.47370 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47658 * 300.00007 * 1 2 3 27 27 H 1.09004 * 109.47135 * 173.95531 * 3 2 1 28 28 H 1.08997 * 109.47656 * 53.95145 * 3 2 1 29 29 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47240 * 186.04841 * 12 2 1 31 31 H 1.09000 * 109.47781 * 306.04691 * 12 2 1 32 32 H 1.09000 * 109.51207 * 301.84112 * 15 13 12 33 33 H 1.09008 * 109.50405 * 61.97851 * 15 13 12 34 34 H 1.09001 * 109.55808 * 177.34489 * 16 15 13 35 35 H 1.08999 * 109.55616 * 297.55107 * 16 15 13 36 36 H 1.08992 * 109.51453 * 63.93053 * 17 16 15 37 37 H 1.09001 * 109.51066 * 184.07900 * 17 16 15 38 38 H 1.09001 * 110.92786 * 338.94242 * 19 18 17 39 39 H 1.09003 * 110.93174 * 102.60099 * 19 18 17 40 40 H 1.09002 * 110.61128 * 278.12294 * 20 19 18 41 41 H 1.09000 * 110.61099 * 155.15364 * 20 19 18 42 42 H 1.08991 * 109.90441 * 266.98987 * 22 21 20 43 43 H 1.08997 * 109.90446 * 145.73077 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6368 2.0470 -1.2985 5 1 1.0738 1.5114 -2.0485 6 6 2.0275 3.3491 -1.5290 7 7 1.7142 3.9389 -2.6620 8 14 3.0018 4.2754 -0.2321 9 1 4.4541 4.0618 -0.4575 10 1 2.6315 3.7754 1.1163 11 1 2.6947 5.7254 -0.3239 12 6 1.9954 -0.7659 1.1376 13 6 1.6314 -2.2425 0.9705 14 1 0.5533 -2.3392 0.8427 15 6 2.0701 -3.0206 2.2137 16 6 1.7463 -4.5053 2.0205 17 6 2.4493 -5.0079 0.7547 18 6 2.0286 -4.1448 -0.4300 19 6 0.5270 -4.3470 -0.7233 20 6 0.5040 -4.3842 -2.2737 21 8 1.7243 -5.0779 -2.6137 22 6 2.7407 -4.6088 -1.7097 23 8 2.2978 -2.7709 -0.1793 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.0797 1.3444 0.1082 28 1 1.5610 1.9274 0.8308 29 1 1.9894 4.8547 -2.8243 30 1 3.0797 -0.6610 1.1756 31 1 1.5611 -0.3872 2.0628 32 1 3.1433 -2.8982 2.3600 33 1 1.5376 -2.6425 3.0865 34 1 2.0992 -5.0710 2.8828 35 1 0.6688 -4.6332 1.9165 36 1 3.5291 -4.9423 0.8875 37 1 2.1670 -6.0441 0.5685 38 1 0.1722 -5.2894 -0.3060 39 1 -0.0598 -3.5099 -0.3451 40 1 0.5107 -3.3735 -2.6818 41 1 -0.3642 -4.9376 -2.6314 42 1 3.2795 -3.7742 -2.1580 43 1 3.4325 -5.4182 -1.4767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615773549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:00 Heat of formation + Delta-G solvation = -109.305116 kcal Electronic energy + Delta-G solvation = -22149.749302 eV Core-core repulsion = 19000.994318 eV Total energy + Delta-G solvation = -3148.754984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.65384 -39.21622 -37.86074 -34.76235 -34.59561 -33.33987 -31.18439 -30.12794 -28.91244 -27.37845 -25.83751 -23.98048 -23.36278 -22.56249 -21.65027 -20.19251 -18.99948 -18.03869 -17.19119 -17.10934 -16.48689 -16.32803 -16.06956 -15.71351 -15.63030 -15.20216 -15.09392 -14.47744 -14.19297 -13.90689 -13.70554 -13.57631 -13.44905 -13.08810 -12.82961 -12.75739 -12.61737 -12.46459 -12.35954 -12.25620 -11.93559 -11.81430 -11.79398 -11.55698 -11.40072 -10.99142 -10.78825 -10.67964 -10.18591 -8.96562 -8.28633 -6.32052 1.33610 1.35272 1.45781 2.33792 2.64249 2.95587 3.04211 3.19239 3.49641 3.76377 3.77720 3.93742 4.04050 4.09301 4.21908 4.26310 4.30962 4.38764 4.40301 4.56588 4.60348 4.66847 4.70545 4.73023 4.79392 4.86146 4.88274 4.93600 4.96908 5.01190 5.04355 5.11532 5.12812 5.19057 5.22894 5.42286 5.52636 5.74263 5.97884 6.35767 6.51897 6.67932 6.74263 7.31388 8.88231 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.005067 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.953667 B = 5524.130832 C = 6132.596371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.544 5.544 3 C 0.173 3.827 4 C -0.516 4.516 5 H 0.034 0.966 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.250 1.250 11 H -0.280 1.280 12 C 0.057 3.943 13 C 0.098 3.902 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.115 4.115 17 C -0.132 4.132 18 C 0.079 3.921 19 C -0.173 4.173 20 C 0.043 3.957 21 O -0.393 6.393 22 C 0.057 3.943 23 O -0.373 6.373 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.022 0.978 27 H 0.024 0.976 28 H -0.010 1.010 29 H 0.267 0.733 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.114 0.886 42 H 0.049 0.951 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 -20.382 12.602 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.268 5.268 3 C 0.046 3.954 4 C -0.554 4.554 5 H 0.053 0.947 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.772 3.228 9 H -0.192 1.192 10 H -0.173 1.173 11 H -0.206 1.206 12 C -0.071 4.071 13 C 0.041 3.959 14 H 0.081 0.919 15 C -0.185 4.185 16 C -0.152 4.152 17 C -0.170 4.170 18 C 0.039 3.961 19 C -0.210 4.210 20 C -0.033 4.033 21 O -0.312 6.312 22 C -0.020 4.020 23 O -0.293 6.293 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.008 0.992 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.132 0.868 42 H 0.067 0.933 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.561 -20.491 11.794 23.649 hybrid contribution -0.051 1.562 0.695 1.710 sum -0.613 -18.930 12.489 22.686 Atomic orbital electron populations 1.22193 0.87672 1.00741 0.99906 1.61745 1.08039 1.14508 1.42483 1.19935 0.94902 0.85889 0.94719 1.21261 1.34844 0.97484 1.01807 0.94726 1.25876 0.97023 0.98413 0.97767 1.70058 1.48657 1.13927 1.26357 0.85687 0.79311 0.77642 0.80111 1.19164 1.17341 1.20550 1.22221 1.00530 0.92398 0.91902 1.22219 0.96241 0.91742 0.85707 0.91882 1.22180 1.02619 0.96345 0.97363 1.21600 1.01065 0.94674 0.97890 1.22061 1.01533 0.99572 0.93819 1.22508 0.94385 0.83230 0.95936 1.23695 0.96740 1.04178 0.96426 1.23647 0.87966 0.96848 0.94802 1.88857 1.20468 1.64787 1.57137 1.23168 0.91209 0.99640 0.87991 1.88009 1.70463 1.23723 1.47119 0.93722 0.90666 0.96000 0.95814 0.99212 0.92434 0.91363 0.92634 0.91253 0.89418 0.89343 0.90990 0.90880 0.88875 0.87568 0.89925 0.93913 0.86819 0.93284 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.17 127.69 1.17 2.83 16 2 N -0.54 -23.22 4.70 -927.08 -4.36 -27.58 16 3 C 0.17 8.55 3.79 85.56 0.32 8.88 16 4 C -0.52 -30.86 9.07 25.60 0.23 -30.63 16 5 H 0.03 2.32 7.35 -2.91 -0.02 2.30 16 6 C 0.01 0.37 5.47 84.65 0.46 0.83 16 7 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 8 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 C 0.06 1.88 4.63 86.30 0.40 2.28 16 13 C 0.10 2.62 2.34 30.62 0.07 2.69 16 14 H 0.06 1.62 4.35 -2.39 -0.01 1.61 16 15 C -0.15 -2.77 5.40 30.69 0.17 -2.60 16 16 C -0.11 -1.67 5.82 30.75 0.18 -1.50 16 17 C -0.13 -2.21 4.56 30.52 0.14 -2.07 16 18 C 0.08 1.87 0.98 -10.30 -0.01 1.86 16 19 C -0.17 -3.65 5.33 31.76 0.17 -3.48 16 20 C 0.04 1.07 7.73 72.70 0.56 1.63 16 21 O -0.39 -10.95 11.53 -148.98 -1.72 -12.67 16 22 C 0.06 1.44 7.19 72.19 0.52 1.96 16 23 O -0.37 -11.63 9.76 -148.98 -1.45 -13.09 16 24 H 0.04 2.00 6.86 -2.39 -0.02 1.99 16 25 H 0.07 2.39 6.21 -2.38 -0.01 2.38 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 1.17 7.36 -2.39 -0.02 1.15 16 28 H -0.01 -0.47 7.18 -2.39 -0.02 -0.49 16 29 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.07 2.32 7.93 -2.38 -0.02 2.30 16 31 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.96 7.53 -2.39 -0.02 0.94 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.22 8.06 -2.39 -0.02 1.20 16 38 H 0.11 1.68 7.75 -2.39 -0.02 1.66 16 39 H 0.08 1.84 6.06 -2.39 -0.01 1.83 16 40 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 1.50 7.96 -2.39 -0.02 1.48 16 43 H 0.12 2.29 7.68 -2.39 -0.02 2.27 16 Total: -1.00 -71.79 325.34 -0.05 -71.84 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.91 Total: 12.43 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.38 Total: -17.31 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -4.06 Total: -87.99 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -3.17 Total: -25.75 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -71.79 -0.05 -71.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615773549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.463 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds