Wall clock time and date at job start Mon Mar 30 2020 00:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46769 * 2 1 4 4 C 1.50699 * 109.47164 * 239.99571 * 2 1 3 5 5 H 1.08005 * 119.99802 * 240.00154 * 4 2 1 6 6 C 1.37871 * 120.00227 * 60.00175 * 4 2 1 7 7 N 1.31509 * 119.99833 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00342 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46833 * 89.99592 * 8 6 4 10 10 H 1.48495 * 109.47267 * 210.00075 * 8 6 4 11 11 H 1.48504 * 109.46849 * 330.00305 * 8 6 4 12 12 N 1.46900 * 109.46927 * 119.99443 * 2 1 3 13 13 C 1.46895 * 111.00308 * 206.03974 * 12 2 1 14 14 H 1.09009 * 109.54004 * 328.43948 * 13 12 2 15 15 C 1.53178 * 109.54133 * 88.61199 * 13 12 2 16 16 C 1.53286 * 109.05590 * 176.91807 * 15 13 12 17 17 O 1.42909 * 109.44949 * 302.37529 * 16 15 13 18 18 C 1.42825 * 114.14597 * 61.03908 * 17 16 15 19 19 C 1.53098 * 109.56260 * 59.26599 * 18 17 16 20 20 C 1.53114 * 109.16360 * 63.04505 * 19 18 17 21 21 O 1.42895 * 109.41474 * 57.50089 * 20 19 18 22 22 C 1.42901 * 114.12598 * 298.83223 * 21 20 19 23 23 C 1.53106 * 109.39145 * 61.18824 * 22 21 20 24 24 C 1.53002 * 109.58044 * 299.08643 * 18 17 16 25 25 H 1.09004 * 109.47040 * 178.94134 * 1 2 3 26 26 H 1.08996 * 109.47624 * 298.94084 * 1 2 3 27 27 H 1.09002 * 109.47068 * 58.94132 * 1 2 3 28 28 H 0.97002 * 119.99954 * 180.02562 * 7 6 4 29 29 H 1.00906 * 111.00250 * 329.99721 * 12 2 1 30 30 H 1.08996 * 109.52648 * 296.89911 * 15 13 12 31 31 H 1.08993 * 109.52438 * 57.10459 * 15 13 12 32 32 H 1.08998 * 109.46235 * 182.38465 * 16 15 13 33 33 H 1.09002 * 109.45897 * 62.36919 * 16 15 13 34 34 H 1.08996 * 109.52845 * 182.95219 * 19 18 17 35 35 H 1.09002 * 109.52193 * 303.14470 * 19 18 17 36 36 H 1.09004 * 109.47813 * 297.51602 * 20 19 18 37 37 H 1.09005 * 109.48764 * 177.49066 * 20 19 18 38 38 H 1.09002 * 109.48380 * 301.21787 * 22 21 20 39 39 H 1.08995 * 109.50113 * 181.17334 * 22 21 20 40 40 H 1.09001 * 109.52406 * 182.54992 * 23 22 21 41 41 H 1.09003 * 109.57681 * 62.38705 * 23 22 21 42 42 H 1.09002 * 109.51556 * 297.44106 * 24 18 17 43 43 H 1.09003 * 109.56175 * 177.30717 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9429 0.8294 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4121 10 1 2.4874 -0.1406 -5.1119 11 1 3.6309 -1.7569 -3.7117 12 7 2.0196 -0.6924 1.1995 13 6 3.3568 -0.2138 1.5747 14 1 3.9046 0.0773 0.6784 15 6 3.2256 0.9925 2.5095 16 6 4.6240 1.4346 2.9552 17 8 5.2871 0.3423 3.5950 18 6 5.4759 -0.7985 2.7566 19 6 6.3082 -0.4037 1.5337 20 6 7.6960 0.0495 1.9953 21 8 8.3159 -1.0014 2.7391 22 6 7.6058 -1.3783 3.9205 23 6 6.2148 -1.8897 3.5362 24 6 4.1159 -1.3296 2.2994 25 1 -0.3633 -1.0275 -0.0190 26 1 -0.3634 0.4973 0.8993 27 1 -0.3633 0.5302 -0.8804 28 1 0.7082 1.1605 -3.4845 29 1 1.3710 -0.5908 1.9658 30 1 2.7337 1.8100 1.9825 31 1 2.6364 0.7140 3.3831 32 1 4.5363 2.2663 3.6543 33 1 5.1997 1.7500 2.0850 34 1 6.4078 -1.2614 0.8685 35 1 5.8154 0.4127 1.0058 36 1 7.5986 0.9330 2.6263 37 1 8.3080 0.2895 1.1258 38 1 7.5067 -0.5135 4.5766 39 1 8.1528 -2.1665 4.4379 40 1 5.6548 -2.1352 4.4385 41 1 6.3118 -2.7795 2.9141 42 1 3.5423 -1.6564 3.1668 43 1 4.2616 -2.1706 1.6214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658517498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:57 Heat of formation + Delta-G solvation = -101.932494 kcal Electronic energy + Delta-G solvation = -22375.377334 eV Core-core repulsion = 19226.942051 eV Total energy + Delta-G solvation = -3148.435283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54497 -37.89285 -35.98131 -33.30275 -33.02982 -31.26322 -30.82646 -28.71838 -27.27803 -25.16382 -23.82226 -23.37280 -23.02903 -20.40681 -20.22791 -19.03465 -16.59894 -16.16788 -16.01028 -15.82534 -15.42380 -14.91480 -14.73286 -14.50174 -14.04753 -13.75454 -13.44123 -12.97959 -12.82981 -12.51658 -12.35284 -12.21205 -11.80492 -11.39155 -11.30702 -11.10060 -10.96278 -10.84706 -10.66703 -10.55774 -10.50737 -10.35450 -10.12327 -10.00488 -9.74261 -9.50865 -9.15247 -9.01251 -8.41211 -7.24540 -5.99681 -4.03252 3.30582 3.37104 3.40828 3.82151 3.91977 4.42168 4.65317 4.83818 4.90047 5.03223 5.10591 5.18958 5.27188 5.31133 5.39434 5.45201 5.50005 5.58227 5.64535 5.68002 5.75791 5.87096 5.95113 6.01068 6.12952 6.13711 6.15839 6.22198 6.39955 6.55232 6.67023 6.74880 6.95519 7.03165 7.21256 7.39341 7.44121 7.72548 7.90493 8.27145 8.35227 8.72749 9.04529 9.62181 11.06670 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.005535 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.221070 B = 5057.598027 C = 5724.344497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.492 4.492 5 H 0.060 0.940 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.680 5.680 13 C 0.095 3.905 14 H 0.083 0.917 15 C -0.183 4.183 16 C 0.064 3.936 17 O -0.376 6.376 18 C 0.119 3.881 19 C -0.183 4.183 20 C 0.066 3.934 21 O -0.387 6.387 22 C 0.064 3.936 23 C -0.138 4.138 24 C -0.124 4.124 25 H 0.034 0.966 26 H 0.004 0.996 27 H 0.088 0.912 28 H 0.259 0.741 29 H 0.316 0.684 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 -0.540 11.959 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.531 4.531 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.308 5.308 13 C -0.016 4.016 14 H 0.101 0.899 15 C -0.222 4.222 16 C -0.014 4.014 17 O -0.295 6.295 18 C 0.080 3.920 19 C -0.221 4.221 20 C -0.011 4.011 21 O -0.305 6.305 22 C -0.013 4.013 23 C -0.176 4.176 24 C -0.162 4.162 25 H 0.054 0.946 26 H 0.023 0.977 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.087 -1.060 11.564 15.381 hybrid contribution -0.548 0.660 -0.801 1.174 sum 9.539 -0.400 10.763 14.387 Atomic orbital electron populations 1.21952 0.98382 0.99848 0.99961 1.19168 0.91432 0.92030 0.86885 0.98138 1.21181 1.30351 1.11950 0.89600 0.92127 1.24955 0.95445 0.95144 0.99017 1.69881 1.37385 1.23230 1.23289 0.86558 0.79265 0.79326 0.82614 1.20735 1.21409 1.19967 1.60732 1.01731 1.60912 1.07474 1.21507 0.92901 0.90919 0.96309 0.89904 1.22998 0.97668 1.00936 1.00639 1.22540 0.92301 0.88889 0.97621 1.87850 1.78389 1.24309 1.38993 1.21424 0.94524 0.86286 0.89800 1.22812 0.96621 1.03814 0.98835 1.22507 0.93318 0.89676 0.95550 1.87878 1.49293 1.55259 1.38117 1.22511 0.91885 0.99650 0.87209 1.22169 0.96484 0.97562 1.01375 1.22128 0.94104 0.99452 1.00557 0.94645 0.97687 0.89355 0.93104 0.86735 0.91050 0.91639 0.89494 0.93039 0.89820 0.89789 0.92952 0.89139 0.92559 0.89262 0.90245 0.89742 0.91706 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.94 37.16 0.33 -3.10 16 2 C 0.21 5.22 2.42 -68.87 -0.17 5.05 16 3 H 0.00 0.03 7.42 -51.93 -0.39 -0.36 16 4 C -0.49 -13.44 8.57 -34.44 -0.30 -13.73 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.47 11.33 55.43 0.63 -24.84 16 8 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 12 N -0.68 -14.08 6.07 -100.76 -0.61 -14.69 16 13 C 0.09 1.70 2.03 -67.53 -0.14 1.56 16 14 H 0.08 1.69 6.23 -51.92 -0.32 1.37 16 15 C -0.18 -2.84 5.42 -26.49 -0.14 -2.98 16 16 C 0.06 0.86 6.52 37.31 0.24 1.11 16 17 O -0.38 -5.31 9.20 -35.23 -0.32 -5.64 16 18 C 0.12 1.65 0.68 -90.51 -0.06 1.58 16 19 C -0.18 -2.52 4.26 -26.62 -0.11 -2.63 16 20 C 0.07 0.83 6.70 37.22 0.25 1.08 16 21 O -0.39 -5.19 10.76 -35.23 -0.38 -5.57 16 22 C 0.06 0.73 6.70 37.21 0.25 0.98 16 23 C -0.14 -1.65 5.14 -26.62 -0.14 -1.79 16 24 C -0.12 -1.94 4.53 -26.64 -0.12 -2.06 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.00 0.09 8.10 -51.93 -0.42 -0.33 16 27 H 0.09 2.33 6.10 -51.93 -0.32 2.02 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 29 H 0.32 6.06 7.97 -39.29 -0.31 5.74 16 30 H 0.07 1.18 7.76 -51.93 -0.40 0.78 16 31 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.69 6.30 -51.93 -0.33 0.36 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.22 5.03 -51.93 -0.26 0.96 16 36 H 0.05 0.64 7.82 -51.93 -0.41 0.24 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -28.70 323.46 -8.36 -37.06 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.33 Total: 5.92 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.20 Total: -13.53 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.02 Total: -39.53 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.70 Total: -11.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.70 -8.36 -37.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.875 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds