Wall clock time and date at job start Mon Mar 30 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46769 * 2 1 4 4 C 1.50699 * 109.47164 * 239.99571 * 2 1 3 5 5 H 1.08005 * 119.99802 * 240.00154 * 4 2 1 6 6 C 1.37871 * 120.00227 * 60.00175 * 4 2 1 7 7 N 1.31509 * 119.99833 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00342 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46833 * 89.99592 * 8 6 4 10 10 H 1.48495 * 109.47267 * 210.00075 * 8 6 4 11 11 H 1.48504 * 109.46849 * 330.00305 * 8 6 4 12 12 N 1.46900 * 109.46927 * 119.99443 * 2 1 3 13 13 C 1.46895 * 111.00308 * 206.03974 * 12 2 1 14 14 H 1.09009 * 109.54004 * 328.43948 * 13 12 2 15 15 C 1.53178 * 109.54133 * 88.61199 * 13 12 2 16 16 C 1.53286 * 109.05590 * 176.91807 * 15 13 12 17 17 O 1.42909 * 109.44949 * 302.37529 * 16 15 13 18 18 C 1.42825 * 114.14597 * 61.03908 * 17 16 15 19 19 C 1.53098 * 109.56260 * 59.26599 * 18 17 16 20 20 C 1.53114 * 109.16360 * 63.04505 * 19 18 17 21 21 O 1.42895 * 109.41474 * 57.50089 * 20 19 18 22 22 C 1.42901 * 114.12598 * 298.83223 * 21 20 19 23 23 C 1.53106 * 109.39145 * 61.18824 * 22 21 20 24 24 C 1.53002 * 109.58044 * 299.08643 * 18 17 16 25 25 H 1.09004 * 109.47040 * 178.94134 * 1 2 3 26 26 H 1.08996 * 109.47624 * 298.94084 * 1 2 3 27 27 H 1.09002 * 109.47068 * 58.94132 * 1 2 3 28 28 H 0.97002 * 119.99954 * 180.02562 * 7 6 4 29 29 H 1.00906 * 111.00250 * 329.99721 * 12 2 1 30 30 H 1.08996 * 109.52648 * 296.89911 * 15 13 12 31 31 H 1.08993 * 109.52438 * 57.10459 * 15 13 12 32 32 H 1.08998 * 109.46235 * 182.38465 * 16 15 13 33 33 H 1.09002 * 109.45897 * 62.36919 * 16 15 13 34 34 H 1.08996 * 109.52845 * 182.95219 * 19 18 17 35 35 H 1.09002 * 109.52193 * 303.14470 * 19 18 17 36 36 H 1.09004 * 109.47813 * 297.51602 * 20 19 18 37 37 H 1.09005 * 109.48764 * 177.49066 * 20 19 18 38 38 H 1.09002 * 109.48380 * 301.21787 * 22 21 20 39 39 H 1.08995 * 109.50113 * 181.17334 * 22 21 20 40 40 H 1.09001 * 109.52406 * 182.54992 * 23 22 21 41 41 H 1.09003 * 109.57681 * 62.38705 * 23 22 21 42 42 H 1.09002 * 109.51556 * 297.44106 * 24 18 17 43 43 H 1.09003 * 109.56175 * 177.30717 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9429 0.8294 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4121 10 1 2.4874 -0.1406 -5.1119 11 1 3.6309 -1.7569 -3.7117 12 7 2.0196 -0.6924 1.1995 13 6 3.3568 -0.2138 1.5747 14 1 3.9046 0.0773 0.6784 15 6 3.2256 0.9925 2.5095 16 6 4.6240 1.4346 2.9552 17 8 5.2871 0.3423 3.5950 18 6 5.4759 -0.7985 2.7566 19 6 6.3082 -0.4037 1.5337 20 6 7.6960 0.0495 1.9953 21 8 8.3159 -1.0014 2.7391 22 6 7.6058 -1.3783 3.9205 23 6 6.2148 -1.8897 3.5362 24 6 4.1159 -1.3296 2.2994 25 1 -0.3633 -1.0275 -0.0190 26 1 -0.3634 0.4973 0.8993 27 1 -0.3633 0.5302 -0.8804 28 1 0.7082 1.1605 -3.4845 29 1 1.3710 -0.5908 1.9658 30 1 2.7337 1.8100 1.9825 31 1 2.6364 0.7140 3.3831 32 1 4.5363 2.2663 3.6543 33 1 5.1997 1.7500 2.0850 34 1 6.4078 -1.2614 0.8685 35 1 5.8154 0.4127 1.0058 36 1 7.5986 0.9330 2.6263 37 1 8.3080 0.2895 1.1258 38 1 7.5067 -0.5135 4.5766 39 1 8.1528 -2.1665 4.4379 40 1 5.6548 -2.1352 4.4385 41 1 6.3118 -2.7795 2.9141 42 1 3.5423 -1.6564 3.1668 43 1 4.2616 -2.1706 1.6214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658517498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:56 Heat of formation + Delta-G solvation = -120.978651 kcal Electronic energy + Delta-G solvation = -22376.203238 eV Core-core repulsion = 19226.942051 eV Total energy + Delta-G solvation = -3149.261186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68208 -39.04888 -37.57141 -35.02401 -34.22485 -32.80388 -32.05802 -29.99397 -28.84926 -27.27010 -24.85192 -24.62017 -24.17658 -22.22168 -21.57873 -20.23878 -18.27182 -17.65365 -17.11065 -16.96164 -16.84672 -16.41463 -15.97096 -15.67135 -15.56233 -15.23654 -14.89974 -14.52041 -14.43241 -13.60609 -13.57778 -13.32379 -13.29226 -12.91492 -12.87587 -12.64033 -12.44258 -12.37065 -12.26044 -12.11182 -12.02856 -12.00962 -11.75344 -11.40512 -11.11029 -10.96377 -10.63559 -10.52028 -10.19798 -8.98619 -8.10373 -6.21529 1.39158 1.40380 1.50218 2.41448 2.73501 2.97637 3.16157 3.40961 3.69752 3.79628 3.84830 3.95259 4.02942 4.17694 4.22643 4.31210 4.40613 4.47481 4.50611 4.65246 4.75428 4.77471 4.78447 4.82298 4.85050 4.92378 4.93326 4.94528 5.05767 5.07061 5.11034 5.23949 5.28721 5.32273 5.48436 5.69912 5.84138 6.25403 6.27509 6.31018 6.48306 6.91625 6.96924 7.48016 8.94002 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.005535 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.221070 B = 5057.598027 C = 5724.344497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.219 3.781 3 H -0.028 1.028 4 C -0.508 4.508 5 H 0.048 0.952 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.683 5.683 13 C 0.095 3.905 14 H 0.052 0.948 15 C -0.175 4.175 16 C 0.066 3.934 17 O -0.374 6.374 18 C 0.121 3.879 19 C -0.182 4.182 20 C 0.070 3.930 21 O -0.400 6.400 22 C 0.063 3.937 23 C -0.136 4.136 24 C -0.115 4.115 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.260 0.740 29 H 0.327 0.673 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.682 -0.994 13.198 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.111 3.889 3 H -0.010 1.010 4 C -0.547 4.547 5 H 0.066 0.934 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.312 5.312 13 C -0.016 4.016 14 H 0.070 0.930 15 C -0.214 4.214 16 C -0.011 4.011 17 O -0.293 6.293 18 C 0.081 3.919 19 C -0.220 4.220 20 C -0.007 4.007 21 O -0.319 6.319 22 C -0.013 4.013 23 C -0.173 4.173 24 C -0.154 4.154 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.144 0.856 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.060 -1.518 12.825 17.003 hybrid contribution -0.865 0.807 -1.161 1.657 sum 10.195 -0.710 11.664 15.508 Atomic orbital electron populations 1.21783 0.97862 0.99516 1.00019 1.18920 0.91752 0.90417 0.87819 1.01018 1.21406 1.30411 1.11763 0.91104 0.93374 1.25662 0.95625 0.95823 1.01691 1.69996 1.38077 1.24216 1.23892 0.85628 0.78794 0.78365 0.79285 1.20204 1.20844 1.19664 1.60629 1.03090 1.60618 1.06882 1.21484 0.91193 0.92926 0.95978 0.92995 1.22876 0.99258 0.99214 1.00072 1.22594 0.90751 0.89393 0.98373 1.87863 1.78214 1.24318 1.38937 1.21429 0.93424 0.86839 0.90159 1.22779 0.97612 1.02946 0.98686 1.22510 0.92483 0.89632 0.96067 1.87868 1.49793 1.55414 1.38819 1.22662 0.91620 1.00436 0.86631 1.22185 0.96810 0.96733 1.01617 1.22036 0.95175 0.98090 1.00090 0.94889 0.95040 0.91950 0.93035 0.85578 0.92435 0.90601 0.86912 0.93161 0.90861 0.91100 0.92470 0.88086 0.92440 0.86901 0.88937 0.89595 0.90998 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.94 71.98 0.64 -5.79 16 2 C 0.22 11.00 2.42 44.17 0.11 11.10 16 3 H -0.03 -1.53 7.42 -2.39 -0.02 -1.55 16 4 C -0.51 -28.30 8.57 25.60 0.22 -28.08 16 5 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -53.04 11.33 21.44 0.24 -52.79 16 8 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 N -0.68 -28.42 6.07 -472.70 -2.87 -31.29 16 13 C 0.09 3.42 2.03 45.04 0.09 3.51 16 14 H 0.05 2.20 6.23 -2.38 -0.01 2.19 16 15 C -0.17 -5.30 5.42 30.75 0.17 -5.14 16 16 C 0.07 1.68 6.52 72.08 0.47 2.15 16 17 O -0.37 -9.78 9.20 -148.98 -1.37 -11.15 16 18 C 0.12 3.19 0.68 -10.72 -0.01 3.18 16 19 C -0.18 -4.95 4.26 30.67 0.13 -4.82 16 20 C 0.07 1.65 6.70 72.02 0.48 2.13 16 21 O -0.40 -9.94 10.76 -148.98 -1.60 -11.54 16 22 C 0.06 1.27 6.70 72.02 0.48 1.76 16 23 C -0.14 -2.95 5.14 30.67 0.16 -2.79 16 24 C -0.12 -3.55 4.53 30.65 0.14 -3.41 16 25 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.03 1.30 8.10 -2.39 -0.02 1.28 16 27 H 0.06 3.34 6.10 -2.39 -0.01 3.33 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.33 12.29 7.97 -89.69 -0.72 11.58 16 30 H 0.06 1.91 7.76 -2.39 -0.02 1.89 16 31 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 32 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.31 6.30 -2.39 -0.02 1.29 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.10 5.03 -2.39 -0.01 2.08 16 36 H 0.06 1.30 7.82 -2.39 -0.02 1.28 16 37 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.06 1.17 7.82 -2.39 -0.02 1.15 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -61.11 323.46 0.23 -60.88 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.27 Total: 24.80 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.53 Total: -25.18 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -2.63 Total: -84.08 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -2.97 Total: -22.69 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -61.11 0.23 -60.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.100 kcal (2) G-P(sol) polarization free energy of solvation -61.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds