Wall clock time and date at job start Mon Mar 30 2020 00:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47269 * 2 1 4 4 C 1.50710 * 109.47114 * 119.99226 * 2 1 3 5 5 H 1.07999 * 119.99591 * 119.99797 * 4 2 1 6 6 C 1.37870 * 120.00287 * 300.00165 * 4 2 1 7 7 N 1.31522 * 119.99866 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00188 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46908 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46957 * 119.99878 * 8 6 4 11 11 H 1.48505 * 109.46798 * 239.99967 * 8 6 4 12 12 N 1.46901 * 109.47314 * 239.99198 * 2 1 3 13 13 C 1.46900 * 110.99788 * 86.45970 * 12 2 1 14 14 H 1.08998 * 109.54206 * 325.78553 * 13 12 2 15 15 C 1.53174 * 109.54234 * 205.60665 * 13 12 2 16 16 C 1.53100 * 109.15207 * 183.08966 * 15 13 12 17 17 O 1.42908 * 109.40193 * 57.68322 * 16 15 13 18 18 C 1.42813 * 114.14096 * 298.94907 * 17 16 15 19 19 C 1.53097 * 109.56325 * 300.76029 * 18 17 16 20 20 C 1.53103 * 109.16698 * 296.91997 * 19 18 17 21 21 O 1.42902 * 109.41682 * 302.48933 * 20 19 18 22 22 C 1.42913 * 114.10775 * 61.18316 * 21 20 19 23 23 C 1.53100 * 109.39739 * 298.80380 * 22 21 20 24 24 C 1.53022 * 109.64876 * 60.88422 * 18 17 16 25 25 H 1.08992 * 109.47219 * 65.81084 * 1 2 3 26 26 H 1.09002 * 109.47112 * 185.81315 * 1 2 3 27 27 H 1.09002 * 109.47095 * 305.81133 * 1 2 3 28 28 H 0.96992 * 119.99861 * 180.02562 * 7 6 4 29 29 H 1.00897 * 110.99994 * 322.50486 * 12 2 1 30 30 H 1.08998 * 109.52714 * 302.98999 * 15 13 12 31 31 H 1.09002 * 109.52583 * 63.12380 * 15 13 12 32 32 H 1.09003 * 109.47685 * 177.66331 * 16 15 13 33 33 H 1.08994 * 109.48340 * 297.68756 * 16 15 13 34 34 H 1.09003 * 109.51946 * 56.82276 * 19 18 17 35 35 H 1.08996 * 109.52168 * 177.01309 * 19 18 17 36 36 H 1.09006 * 109.48148 * 182.50958 * 20 19 18 37 37 H 1.09000 * 109.48145 * 62.47669 * 20 19 18 38 38 H 1.08998 * 109.47902 * 178.82627 * 22 21 20 39 39 H 1.09001 * 109.48483 * 58.78468 * 22 21 20 40 40 H 1.09002 * 109.52399 * 297.63549 * 23 22 21 41 41 H 1.09003 * 109.57555 * 177.47528 * 23 22 21 42 42 H 1.09005 * 109.59536 * 182.79770 * 24 18 17 43 43 H 1.09005 * 109.45146 * 62.62758 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6993 -0.2392 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.1454 -2.2874 3.6041 10 1 3.1466 -0.1869 4.8165 11 1 1.1660 -1.5862 4.8163 12 7 2.0197 -0.6927 -1.1993 13 6 2.1153 0.2304 -2.3381 14 1 1.3135 0.9663 -2.2793 15 6 1.9939 -0.5562 -3.6468 16 6 2.1718 0.4023 -4.8273 17 8 3.4391 1.0545 -4.7225 18 6 3.5953 1.8407 -3.5405 19 6 2.5124 2.9220 -3.4973 20 6 2.6949 3.8642 -4.6902 21 8 4.0069 4.4293 -4.6529 22 6 5.0597 3.4668 -4.7400 23 6 4.9728 2.5091 -3.5487 24 6 3.4699 0.9449 -2.3063 25 1 -0.3633 0.4211 -0.9374 26 1 -0.3633 -1.0224 0.1041 27 1 -0.3633 0.6013 0.8334 28 1 0.7087 1.1615 3.4843 29 1 1.4356 -1.4843 -1.4235 30 1 2.7655 -1.3253 -3.6826 31 1 1.0108 -1.0238 -3.7010 32 1 2.1278 -0.1588 -5.7609 33 1 1.3768 1.1477 -4.8134 34 1 1.5289 2.4549 -3.5493 35 1 2.5994 3.4878 -2.5697 36 1 1.9539 4.6621 -4.6400 37 1 2.5658 3.3059 -5.6175 38 1 6.0220 3.9785 -4.7257 39 1 4.9612 2.9031 -5.6677 40 1 5.1129 3.0662 -2.6223 41 1 5.7470 1.7467 -3.6358 42 1 3.5397 1.5531 -1.4045 43 1 4.2714 0.2061 -2.3111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658517499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:59 Heat of formation + Delta-G solvation = -101.717458 kcal Electronic energy + Delta-G solvation = -22336.282968 eV Core-core repulsion = 19187.857010 eV Total energy + Delta-G solvation = -3148.425958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57430 -37.90560 -36.04868 -33.25920 -33.10948 -31.27903 -30.90320 -28.61956 -27.28151 -25.15858 -23.86573 -23.50736 -23.09774 -20.58460 -19.88879 -19.09027 -16.68632 -16.33959 -16.01481 -15.77723 -15.41282 -14.88219 -14.70945 -14.57401 -14.45165 -13.73873 -13.26554 -12.84517 -12.73994 -12.47342 -12.29133 -12.07972 -11.79644 -11.64248 -11.38551 -11.27539 -11.09527 -10.97971 -10.77603 -10.55504 -10.41722 -10.28230 -10.14275 -10.08962 -9.68653 -9.59293 -9.14912 -8.92408 -8.38074 -7.26360 -5.99748 -4.02299 3.30713 3.38580 3.43957 3.79583 3.90780 4.42667 4.65526 4.82488 4.89303 4.97490 5.01660 5.14106 5.24029 5.32402 5.34484 5.40829 5.47601 5.56505 5.62069 5.65628 5.72776 5.83286 5.89395 6.02325 6.03416 6.11892 6.14204 6.22187 6.37271 6.52959 6.65218 6.72213 6.80108 7.07721 7.20125 7.35870 7.37196 7.70093 7.88730 8.26032 8.52582 8.60739 9.05415 9.63233 11.07817 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025695 B = 0.004907 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.440548 B = 5704.917682 C = 6041.748466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.680 5.680 13 C 0.089 3.911 14 H 0.037 0.963 15 C -0.157 4.157 16 C 0.063 3.937 17 O -0.374 6.374 18 C 0.120 3.880 19 C -0.183 4.183 20 C 0.067 3.933 21 O -0.386 6.386 22 C 0.064 3.936 23 C -0.139 4.139 24 C -0.123 4.123 25 H 0.002 0.998 26 H 0.030 0.970 27 H 0.085 0.915 28 H 0.259 0.741 29 H 0.326 0.674 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 3.280 -15.322 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.309 5.309 13 C -0.022 4.022 14 H 0.055 0.945 15 C -0.195 4.195 16 C -0.014 4.014 17 O -0.294 6.294 18 C 0.080 3.920 19 C -0.221 4.221 20 C -0.010 4.010 21 O -0.305 6.305 22 C -0.012 4.012 23 C -0.177 4.177 24 C -0.162 4.162 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.947 3.634 -15.110 16.035 hybrid contribution -1.129 -0.679 1.025 1.669 sum 2.818 2.956 -14.086 14.666 Atomic orbital electron populations 1.22419 1.00782 1.00155 0.99167 1.19204 0.89432 0.94342 0.86620 0.94940 1.21194 1.30104 1.12363 0.89575 0.91939 1.24954 0.95346 0.95207 0.99048 1.69906 1.37429 1.23265 1.23217 0.86469 0.78506 0.79686 0.82910 1.19749 1.21143 1.21232 1.60808 1.57180 1.09496 1.03448 1.21431 0.95890 0.94522 0.90354 0.94541 1.22404 1.02418 0.99356 0.95343 1.22522 0.86082 0.94492 0.98320 1.87862 1.35185 1.64672 1.41632 1.21446 0.94703 0.89887 0.85965 1.22817 1.00450 0.98196 1.00616 1.22487 0.84615 0.96794 0.97096 1.87888 1.14460 1.33471 1.94669 1.22526 0.90582 0.90709 0.97417 1.22172 0.96079 0.99108 1.00306 1.22122 0.98713 0.98714 0.96600 0.97882 0.95117 0.89645 0.93165 0.85730 0.90471 0.91496 0.89248 0.93340 0.90223 0.89835 0.89242 0.92984 0.89171 0.92547 0.89630 0.90033 0.90675 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.85 37.16 0.33 -3.62 16 2 C 0.21 5.23 2.38 -68.86 -0.16 5.06 16 3 H 0.03 0.89 7.22 -51.93 -0.37 0.51 16 4 C -0.49 -13.58 8.84 -34.44 -0.30 -13.89 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.65 11.38 55.43 0.63 -25.02 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 N -0.68 -14.10 6.05 -100.76 -0.61 -14.71 16 13 C 0.09 1.53 2.05 -67.53 -0.14 1.39 16 14 H 0.04 0.67 5.80 -51.93 -0.30 0.37 16 15 C -0.16 -2.20 5.40 -26.59 -0.14 -2.35 16 16 C 0.06 0.78 6.52 37.21 0.24 1.02 16 17 O -0.37 -5.18 9.21 -35.23 -0.32 -5.51 16 18 C 0.12 1.68 0.68 -90.50 -0.06 1.62 16 19 C -0.18 -2.47 4.25 -26.63 -0.11 -2.58 16 20 C 0.07 0.81 6.70 37.21 0.25 1.06 16 21 O -0.39 -5.20 10.76 -35.23 -0.38 -5.58 16 22 C 0.06 0.75 6.70 37.21 0.25 1.00 16 23 C -0.14 -1.76 5.14 -26.62 -0.14 -1.89 16 24 C -0.12 -2.07 4.41 -26.63 -0.12 -2.18 16 25 H 0.00 0.05 7.50 -51.93 -0.39 -0.34 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 2.26 6.25 -51.93 -0.32 1.93 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.33 6.44 8.08 -39.29 -0.32 6.12 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.57 6.30 -51.93 -0.33 0.24 16 34 H 0.08 1.07 5.03 -51.93 -0.26 0.81 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.61 7.83 -51.93 -0.41 0.20 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.41 7.57 -51.93 -0.39 1.02 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 322.42 15.07 4.86 4.86 Total: -1.00 -29.02 322.42 -8.32 -37.34 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.27 Total: 6.05 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -0.20 Total: -13.93 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.02 Total: -39.73 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.70 Total: -11.08 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.02 -8.32 -37.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.378 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds